Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47158 * 270.00264 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99810 * 3 2 1 6 6 H 1.48494 * 109.47273 * 150.00228 * 3 2 1 7 7 C 1.37880 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99908 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88534 * 303.88223 * 9 7 2 11 11 C 1.55150 * 111.00396 * 180.02562 * 9 7 2 12 12 C 1.54319 * 102.94267 * 206.38501 * 11 9 7 13 13 N 1.47029 * 107.27255 * 22.19304 * 12 11 9 14 14 C 1.34770 * 125.64985 * 180.79109 * 13 12 11 15 15 O 1.21563 * 120.00192 * 174.56636 * 14 13 12 16 16 C 1.47801 * 120.00149 * 354.57288 * 14 13 12 17 17 C 1.40071 * 120.54537 * 6.85489 * 16 14 13 18 18 C 1.38278 * 118.30042 * 179.78297 * 17 16 14 19 19 C 1.38508 * 119.29507 * 0.51802 * 18 17 16 20 20 Br 1.89102 * 119.47511 * 179.69960 * 19 18 17 21 21 N 1.32024 * 121.05275 * 359.72120 * 19 18 17 22 22 C 1.31679 * 121.86522 * 0.02562 * 21 19 18 23 23 C 1.47425 * 108.69965 * 1.06115 * 13 12 11 24 24 H 0.97001 * 120.00082 * 0.02562 * 1 2 3 25 25 H 0.96699 * 113.99891 * 56.12284 * 10 9 7 26 26 H 1.09005 * 110.72070 * 88.02166 * 11 9 7 27 27 H 1.09006 * 110.71806 * 324.74935 * 11 9 7 28 28 H 1.08997 * 109.88713 * 262.77429 * 12 11 9 29 29 H 1.09009 * 110.01229 * 141.67932 * 12 11 9 30 30 H 1.08003 * 120.85435 * 0.02562 * 17 16 14 31 31 H 1.07995 * 120.35449 * 180.21514 * 18 17 16 32 32 H 1.08000 * 119.71164 * 180.02562 * 22 21 19 33 33 H 1.08997 * 110.36959 * 94.70716 * 23 13 12 34 34 H 1.09004 * 110.36528 * 217.03306 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.3522 -2.5685 1.1082 11 6 2.2274 -3.7050 -0.0005 12 6 1.3978 -4.8214 -0.6689 13 7 0.3463 -4.1684 -1.4625 14 6 -0.5977 -4.8007 -2.1873 15 8 -1.4796 -4.1613 -2.7267 16 6 -0.5607 -6.2717 -2.3264 17 6 0.3615 -7.0328 -1.5967 18 6 0.3524 -8.4060 -1.7590 19 6 -0.5523 -8.9786 -2.6377 20 35 -0.5634 -10.8553 -2.8700 21 7 -1.4067 -8.2350 -3.3160 22 6 -1.4394 -6.9246 -3.1914 23 6 0.4996 -2.7074 -1.3391 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2773 -1.8357 1.1505 26 1 2.4974 -3.9826 1.0184 27 1 3.1172 -3.4807 -0.5890 28 1 0.9464 -5.4554 0.0942 29 1 2.0347 -5.4209 -1.3194 30 1 1.0591 -6.5596 -0.9215 31 1 1.0466 -9.0250 -1.2102 32 1 -2.1533 -6.3501 -3.7630 33 1 1.0878 -2.3162 -2.1692 34 1 -0.4773 -2.2250 -1.3047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -40.776105 kcal Electronic energy + Delta-G solvation = -21361.537999 eV Core-core repulsion = 17919.756656 eV Total energy + Delta-G solvation = -3441.781343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.98615 -40.47898 -38.90403 -36.36815 -34.17548 -34.12076 -33.52248 -31.92816 -30.95954 -29.74430 -27.32072 -25.70204 -24.76718 -23.62946 -21.55803 -21.11546 -19.19116 -18.50396 -17.87554 -17.77060 -17.05499 -16.83478 -16.43012 -16.16890 -15.53462 -15.38601 -14.93310 -14.84484 -14.72127 -14.37436 -13.90958 -13.47917 -13.29489 -13.15033 -12.83442 -12.35892 -12.32697 -12.20630 -12.14663 -12.06826 -11.61331 -11.41709 -11.18933 -11.16028 -10.74617 -10.59949 -10.33839 -10.19294 -9.55244 -8.26203 -6.42839 -0.74551 -0.03893 0.13818 1.42591 1.45699 1.54654 1.59363 1.89955 2.38516 2.52378 3.00300 3.15525 3.35676 3.62313 3.69321 3.76418 3.79109 4.11147 4.19976 4.30432 4.42281 4.50760 4.64210 4.71125 4.79716 5.00071 5.06191 5.15437 5.28084 5.39589 5.46016 5.76849 6.03376 6.36690 6.51159 6.66371 6.97572 7.30138 7.38723 8.79135 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.038746 B = 0.002551 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.477027 B =10974.875740 C =11391.494224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.231 3.769 10 O -0.590 6.590 11 C -0.114 4.114 12 C 0.087 3.913 13 N -0.601 5.601 14 C 0.561 3.439 15 O -0.587 6.587 16 C -0.171 4.171 17 C -0.060 4.060 18 C -0.129 4.129 19 C 0.123 3.877 20 Br 0.012 6.988 21 N -0.482 5.482 22 C 0.158 3.842 23 C 0.103 3.897 24 H 0.270 0.730 25 H 0.377 0.623 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.202 0.798 31 H 0.191 0.809 32 H 0.171 0.829 33 H 0.052 0.948 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 -21.275 -2.660 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.091 0.909 9 C 0.190 3.810 10 O -0.399 6.399 11 C -0.152 4.152 12 C -0.034 4.034 13 N -0.332 5.332 14 C 0.350 3.650 15 O -0.469 6.469 16 C -0.177 4.177 17 C -0.086 4.086 18 C -0.150 4.150 19 C -0.093 4.093 20 Br 0.097 6.903 21 N -0.192 5.192 22 C -0.002 4.002 23 C -0.019 4.019 24 H 0.079 0.921 25 H 0.228 0.772 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.218 0.782 31 H 0.209 0.791 32 H 0.188 0.812 33 H 0.071 0.929 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.542 -22.539 -3.505 23.083 hybrid contribution -0.077 2.786 0.171 2.793 sum 3.465 -19.752 -3.334 20.329 Atomic orbital electron populations 1.69678 1.07235 1.28502 1.50450 1.25832 0.95698 1.02903 0.93143 0.85461 0.78795 0.78705 0.78108 1.20366 1.21230 1.18776 1.21855 0.94166 0.91120 1.52054 0.90874 1.19870 0.86265 0.93518 0.81299 1.86047 1.51192 1.52560 1.50134 1.22718 0.97480 0.92972 1.01995 1.22837 0.89243 0.96395 0.94900 1.48646 1.29642 1.08744 1.46159 1.18162 0.80767 0.87362 0.78666 1.90747 1.36934 1.68621 1.50596 1.20936 1.01232 0.93035 1.02500 1.23561 0.95638 0.93787 0.95615 1.22406 0.99253 0.95315 0.98071 1.23552 0.95315 0.94146 0.96284 1.96819 1.98137 0.98305 1.97053 1.67584 1.22044 1.06386 1.23200 1.22945 0.94974 0.88890 0.93390 1.22969 1.00264 0.78036 1.00677 0.92053 0.77201 0.88933 0.88695 0.88834 0.87122 0.78181 0.79149 0.81226 0.92931 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.77 10.72 21.45 0.23 -48.54 16 2 C 0.02 1.25 5.30 84.66 0.45 1.69 16 3 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -27.18 8.25 25.60 0.21 -26.97 16 8 H 0.07 3.43 7.76 -2.91 -0.02 3.41 16 9 C 0.23 10.40 0.89 -10.15 -0.01 10.40 16 10 O -0.59 -29.00 13.18 -148.98 -1.96 -30.97 16 11 C -0.11 -3.72 6.13 31.78 0.19 -3.53 16 12 C 0.09 2.35 4.87 86.73 0.42 2.77 16 13 N -0.60 -22.46 3.33 -818.12 -2.72 -25.18 16 14 C 0.56 21.33 7.81 86.77 0.68 22.01 16 15 O -0.59 -27.32 16.63 -3.91 -0.07 -27.38 16 16 C -0.17 -4.92 5.89 -19.99 -0.12 -5.04 16 17 C -0.06 -1.22 8.69 22.72 0.20 -1.03 16 18 C -0.13 -2.17 9.81 22.34 0.22 -1.95 16 19 C 0.12 2.65 7.17 84.73 0.61 3.26 16 20 Br 0.01 0.22 33.86 -20.37 -0.69 -0.47 16 21 N -0.48 -12.80 10.31 -189.64 -1.95 -14.75 16 22 C 0.16 4.50 10.76 85.03 0.92 5.41 16 23 C 0.10 4.76 5.65 86.86 0.49 5.25 16 24 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.38 19.98 6.93 -74.06 -0.51 19.46 16 26 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 27 H 0.09 2.81 8.01 -2.38 -0.02 2.80 16 28 H 0.09 2.16 6.75 -2.39 -0.02 2.14 16 29 H 0.11 2.07 6.72 -2.38 -0.02 2.05 16 30 H 0.20 3.22 2.91 -4.03 -0.01 3.20 16 31 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.17 4.91 7.68 -2.91 -0.02 4.88 16 33 H 0.05 2.49 8.03 -2.39 -0.02 2.47 16 34 H 0.04 2.31 7.60 -2.38 -0.02 2.29 16 Total: -1.00 -64.27 307.00 -0.23 -64.50 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.65 Total: 28.13 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 4.26 Total: 12.28 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -4.45 Total: -88.47 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -2.03 Total: -58.35 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.69 Total: -0.47 kcal Total: -64.27 -0.23 -64.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.721 kcal (2) G-P(sol) polarization free energy of solvation -64.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds