Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00235 * 2 1 4 4 H 1.48505 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47526 * 299.99734 * 3 2 1 6 6 H 1.48500 * 109.47336 * 60.00090 * 3 2 1 7 7 C 1.37880 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.63842 * 56.85909 * 9 7 2 11 11 C 1.55159 * 110.71988 * 180.02562 * 9 7 2 12 12 C 1.54910 * 101.58026 * 154.04207 * 11 9 7 13 13 N 1.47419 * 104.83333 * 322.98995 * 12 11 9 14 14 C 1.34776 * 125.64978 * 204.08990 * 13 12 11 15 15 O 1.21557 * 119.99914 * 5.64504 * 14 13 12 16 16 C 1.47784 * 120.00021 * 185.64825 * 14 13 12 17 17 C 1.40018 * 120.56367 * 353.18243 * 16 14 13 18 18 C 1.38361 * 118.29473 * 180.23883 * 17 16 14 19 19 C 1.38357 * 119.33242 * 359.46567 * 18 17 16 20 20 N 1.31924 * 121.09813 * 0.27511 * 19 18 17 21 21 C 1.31792 * 121.86521 * 0.02562 * 20 19 18 22 22 Br 1.89103 * 119.73154 * 179.97438 * 21 20 19 23 23 C 1.47028 * 108.70354 * 24.36005 * 13 12 11 24 24 H 0.96999 * 119.99889 * 0.02562 * 1 2 3 25 25 H 0.96695 * 114.00751 * 303.13771 * 10 9 7 26 26 H 1.09002 * 111.00216 * 35.96851 * 11 9 7 27 27 H 1.08998 * 111.00509 * 272.11901 * 11 9 7 28 28 H 1.09002 * 110.36237 * 204.15114 * 12 11 9 29 29 H 1.09001 * 110.45773 * 81.87807 * 12 11 9 30 30 H 1.07991 * 120.85670 * 359.97438 * 17 16 14 31 31 H 1.07995 * 120.33568 * 179.73737 * 18 17 16 32 32 H 1.08000 * 119.44752 * 180.25634 * 19 18 17 33 33 H 1.08992 * 109.88599 * 118.12658 * 23 13 12 34 34 H 1.09003 * 109.87714 * 239.29415 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 0.3654 -2.5705 -1.1176 11 6 2.2331 -3.7003 0.0028 12 6 1.3737 -4.8042 0.6680 13 7 0.5903 -4.1017 1.7005 14 6 0.0652 -4.6648 2.8067 15 8 0.3079 -5.8261 3.0713 16 6 -0.8057 -3.8703 3.6980 17 6 -0.9795 -2.4974 3.4849 18 6 -1.8014 -1.7981 4.3508 19 6 -2.4286 -2.4728 5.3832 20 7 -2.2512 -3.7683 5.5576 21 6 -1.4739 -4.4772 4.7637 22 35 -1.2622 -6.3313 5.0696 23 6 0.4711 -2.6865 1.3203 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2691 -1.8425 -1.1643 26 1 3.1180 -3.4808 0.6003 27 1 2.5096 -3.9798 -1.0138 28 1 2.0135 -5.5590 1.1253 29 1 0.7102 -5.2637 -0.0646 30 1 -0.4814 -1.9962 2.6682 31 1 -1.9554 -0.7373 4.2196 32 1 -3.0738 -1.9296 6.0578 33 1 -0.5777 -2.4293 1.1727 34 1 0.9037 -2.0563 2.0974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -8.557295 kcal Electronic energy + Delta-G solvation = -21971.361873 eV Core-core repulsion = 18530.977643 eV Total energy + Delta-G solvation = -3440.384230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60451 -39.02205 -37.33874 -34.45875 -33.01260 -32.34130 -32.25298 -30.30132 -29.42126 -28.12794 -25.70190 -24.46107 -23.12861 -22.32063 -20.00364 -19.48725 -17.49097 -16.94497 -16.69082 -16.26679 -15.69459 -15.15164 -15.10685 -14.50009 -14.10818 -14.03388 -13.47288 -13.16028 -13.08365 -12.69520 -12.29983 -11.99724 -11.77195 -11.72013 -11.18014 -10.86187 -10.79926 -10.72770 -10.63222 -10.53664 -10.34180 -9.82738 -9.80221 -9.43280 -8.95718 -8.87890 -8.79808 -8.36248 -8.03466 -6.49975 -4.58146 0.59294 1.10344 1.52698 3.06272 3.07786 3.17146 3.20871 3.37946 3.82907 4.10696 4.39474 4.74154 4.80703 4.85269 4.96515 5.17212 5.31257 5.53612 5.62416 5.74621 5.83677 5.95584 6.09791 6.11280 6.28314 6.40672 6.43439 6.64597 6.77420 6.89154 7.14569 7.54680 7.60575 7.78430 8.02251 8.45156 8.53230 9.12300 9.27125 10.57603 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.004347 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.860480 B = 6439.834270 C = 7572.811575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.119 4.119 12 C 0.111 3.889 13 N -0.602 5.602 14 C 0.560 3.440 15 O -0.526 6.526 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.165 4.165 19 C 0.118 3.882 20 N -0.472 5.472 21 C 0.165 3.835 22 Br 0.023 6.977 23 C 0.076 3.924 24 H 0.272 0.728 25 H 0.386 0.614 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.194 0.806 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.075 0.925 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 -4.066 8.127 9.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.157 4.157 12 C -0.011 4.011 13 N -0.335 5.335 14 C 0.348 3.652 15 O -0.404 6.404 16 C -0.158 4.158 17 C -0.094 4.094 18 C -0.185 4.185 19 C -0.040 4.040 20 N -0.183 5.183 21 C -0.054 4.054 22 Br 0.108 6.892 23 C -0.046 4.046 24 H 0.082 0.918 25 H 0.238 0.762 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.211 0.789 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.093 0.907 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.928 -6.264 9.011 11.656 hybrid contribution 0.235 2.563 -0.498 2.622 sum -3.693 -3.701 8.513 9.991 Atomic orbital electron populations 1.69563 1.05980 1.28082 1.50536 1.25062 0.95098 0.99803 0.93243 0.86335 0.80221 0.82466 0.77895 1.19513 1.20628 1.20699 1.21636 0.94017 0.89953 1.51642 0.91213 1.19513 0.85872 0.92447 0.81388 1.86124 1.51329 1.53280 1.48565 1.22794 0.97627 0.94725 1.00560 1.22237 0.93916 0.95572 0.89342 1.48624 1.51842 1.11929 1.21076 1.17563 0.80684 0.86452 0.80534 1.90888 1.60638 1.16314 1.72608 1.20696 1.01584 0.95319 0.98153 1.23775 0.93864 0.92756 0.98982 1.22340 0.98029 1.02292 0.95887 1.23011 0.96032 0.89305 0.95685 1.67543 1.15691 1.08168 1.26853 1.22967 0.95267 0.94409 0.92736 1.96796 1.96146 1.00730 1.95517 1.23593 1.01563 0.78718 1.00721 0.91816 0.76227 0.90415 0.90233 0.91201 0.91581 0.78947 0.83445 0.81737 0.90670 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.70 10.97 55.43 0.61 -20.09 16 2 C 0.07 1.62 5.28 -17.82 -0.09 1.53 16 3 Si 0.90 18.47 29.54 -169.99 -5.02 13.45 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.53 -12.54 8.12 -34.44 -0.28 -12.81 16 8 H 0.07 1.64 7.76 -52.49 -0.41 1.24 16 9 C 0.25 5.41 0.86 -89.93 -0.08 5.33 16 10 O -0.58 -13.54 13.07 -35.23 -0.46 -14.00 16 11 C -0.12 -2.26 6.23 -24.58 -0.15 -2.42 16 12 C 0.11 2.04 6.92 -2.53 -0.02 2.03 16 13 N -0.60 -11.69 3.33 -172.55 -0.57 -12.26 16 14 C 0.56 10.96 7.79 -12.36 -0.10 10.87 16 15 O -0.53 -10.89 13.79 5.32 0.07 -10.82 16 16 C -0.15 -2.68 5.89 -104.79 -0.62 -3.29 16 17 C -0.07 -1.10 8.70 -38.87 -0.34 -1.44 16 18 C -0.17 -2.16 10.10 -39.49 -0.40 -2.56 16 19 C 0.12 1.50 11.17 -17.47 -0.20 1.30 16 20 N -0.47 -7.41 10.31 -11.29 -0.12 -7.53 16 21 C 0.16 2.84 7.21 -17.04 -0.12 2.72 16 22 Br 0.02 0.38 30.61 -68.01 -2.08 -1.70 16 23 C 0.08 1.52 3.54 -3.06 -0.01 1.51 16 24 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 25 H 0.39 9.08 6.98 45.56 0.32 9.40 16 26 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.19 3.32 2.91 -53.67 -0.16 3.17 16 31 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.08 1.55 6.68 -51.93 -0.35 1.21 16 34 H 0.08 1.55 6.40 -51.93 -0.33 1.22 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -25.94 302.20 -8.00 -33.95 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -2.58 Total: 11.68 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.40 Total: 2.76 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.08 Total: -39.88 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.39 Total: -24.82 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Atomic # 35 Polarization: 0.38 SS G_CDS: -2.08 Total: -1.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.94 -8.00 -33.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.388 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds