Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00235 * 2 1 4 4 H 1.48505 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47526 * 299.99734 * 3 2 1 6 6 H 1.48500 * 109.47336 * 60.00090 * 3 2 1 7 7 C 1.37880 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.63842 * 56.85909 * 9 7 2 11 11 C 1.55159 * 110.71988 * 180.02562 * 9 7 2 12 12 C 1.54910 * 101.58026 * 154.04207 * 11 9 7 13 13 N 1.47419 * 104.83333 * 322.98995 * 12 11 9 14 14 C 1.34776 * 125.64978 * 204.08990 * 13 12 11 15 15 O 1.21557 * 119.99914 * 5.64504 * 14 13 12 16 16 C 1.47784 * 120.00021 * 185.64825 * 14 13 12 17 17 C 1.40018 * 120.56367 * 353.18243 * 16 14 13 18 18 C 1.38361 * 118.29473 * 180.23883 * 17 16 14 19 19 C 1.38357 * 119.33242 * 359.46567 * 18 17 16 20 20 N 1.31924 * 121.09813 * 0.27511 * 19 18 17 21 21 C 1.31792 * 121.86521 * 0.02562 * 20 19 18 22 22 Br 1.89103 * 119.73154 * 179.97438 * 21 20 19 23 23 C 1.47028 * 108.70354 * 24.36005 * 13 12 11 24 24 H 0.96999 * 119.99889 * 0.02562 * 1 2 3 25 25 H 0.96695 * 114.00751 * 303.13771 * 10 9 7 26 26 H 1.09002 * 111.00216 * 35.96851 * 11 9 7 27 27 H 1.08998 * 111.00509 * 272.11901 * 11 9 7 28 28 H 1.09002 * 110.36237 * 204.15114 * 12 11 9 29 29 H 1.09001 * 110.45773 * 81.87807 * 12 11 9 30 30 H 1.07991 * 120.85670 * 359.97438 * 17 16 14 31 31 H 1.07995 * 120.33568 * 179.73737 * 18 17 16 32 32 H 1.08000 * 119.44752 * 180.25634 * 19 18 17 33 33 H 1.08992 * 109.88599 * 118.12658 * 23 13 12 34 34 H 1.09003 * 109.87714 * 239.29415 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 0.3654 -2.5705 -1.1176 11 6 2.2331 -3.7003 0.0028 12 6 1.3737 -4.8042 0.6680 13 7 0.5903 -4.1017 1.7005 14 6 0.0652 -4.6648 2.8067 15 8 0.3079 -5.8261 3.0713 16 6 -0.8057 -3.8703 3.6980 17 6 -0.9795 -2.4974 3.4849 18 6 -1.8014 -1.7981 4.3508 19 6 -2.4286 -2.4728 5.3832 20 7 -2.2512 -3.7683 5.5576 21 6 -1.4739 -4.4772 4.7637 22 35 -1.2622 -6.3313 5.0696 23 6 0.4711 -2.6865 1.3203 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2691 -1.8425 -1.1643 26 1 3.1180 -3.4808 0.6003 27 1 2.5096 -3.9798 -1.0138 28 1 2.0135 -5.5590 1.1253 29 1 0.7102 -5.2637 -0.0646 30 1 -0.4814 -1.9962 2.6682 31 1 -1.9554 -0.7373 4.2196 32 1 -3.0738 -1.9296 6.0578 33 1 -0.5777 -2.4293 1.1727 34 1 0.9037 -2.0563 2.0974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -25.551457 kcal Electronic energy + Delta-G solvation = -21972.098795 eV Core-core repulsion = 18530.977643 eV Total energy + Delta-G solvation = -3441.121152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92742 -40.42278 -38.92947 -36.11785 -34.34493 -34.06306 -33.48513 -31.77073 -30.71678 -29.72844 -27.31506 -25.85774 -24.37851 -23.74461 -21.57904 -20.97244 -19.18244 -18.35703 -18.01596 -17.56983 -17.14321 -16.80884 -16.57635 -16.02855 -15.45809 -15.22484 -14.95648 -14.80771 -14.62162 -14.14126 -13.69059 -13.45903 -13.40219 -13.24716 -12.79449 -12.39509 -12.30063 -12.23457 -12.09021 -12.03291 -11.95047 -11.20345 -11.07237 -10.91465 -10.60085 -10.38258 -10.16774 -9.93836 -9.56879 -8.24747 -6.38769 -0.62303 -0.08728 0.28571 1.44312 1.51511 1.59172 1.71033 1.91730 2.41716 2.57522 3.00391 3.20022 3.48708 3.65037 3.80917 3.88368 4.02009 4.05699 4.17070 4.31694 4.33362 4.56523 4.71789 4.77877 4.84389 4.97031 5.09721 5.22085 5.28266 5.37021 5.47926 5.78076 6.04939 6.43703 6.50807 6.66752 7.00926 7.33147 7.45034 8.81905 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.004347 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.860480 B = 6439.834270 C = 7572.811575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.040 3.960 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.233 3.767 10 O -0.592 6.592 11 C -0.113 4.113 12 C 0.113 3.887 13 N -0.606 5.606 14 C 0.556 3.444 15 O -0.543 6.543 16 C -0.172 4.172 17 C -0.079 4.079 18 C -0.152 4.152 19 C 0.131 3.869 20 N -0.483 5.483 21 C 0.151 3.849 22 Br 0.017 6.983 23 C 0.097 3.903 24 H 0.275 0.725 25 H 0.381 0.619 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.213 0.787 33 H 0.067 0.933 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -2.713 9.194 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.161 4.161 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.594 4.594 8 H 0.080 0.920 9 C 0.193 3.807 10 O -0.402 6.402 11 C -0.151 4.151 12 C -0.008 4.008 13 N -0.339 5.339 14 C 0.344 3.656 15 O -0.423 6.423 16 C -0.180 4.180 17 C -0.104 4.104 18 C -0.172 4.172 19 C -0.027 4.027 20 N -0.194 5.194 21 C -0.067 4.067 22 Br 0.102 6.898 23 C -0.025 4.025 24 H 0.085 0.915 25 H 0.232 0.768 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.197 0.803 31 H 0.199 0.801 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.562 -4.922 10.077 12.108 hybrid contribution 0.379 2.207 -0.807 2.380 sum -4.184 -2.715 9.270 10.527 Atomic orbital electron populations 1.69608 1.06463 1.28730 1.50082 1.25574 0.95806 1.01821 0.92935 0.85541 0.78911 0.79626 0.77743 1.20008 1.20943 1.20036 1.21794 0.93878 0.91107 1.52654 0.91967 1.19730 0.86327 0.93019 0.81647 1.86118 1.51469 1.53060 1.49504 1.22770 0.97355 0.93834 1.01172 1.22244 0.93875 0.95519 0.89211 1.48673 1.52133 1.11716 1.21363 1.17918 0.80598 0.86495 0.80543 1.90864 1.61356 1.17051 1.73028 1.20614 1.02602 0.96039 0.98728 1.23666 0.94937 0.92234 0.99584 1.22711 0.96134 1.03700 0.94608 1.23814 0.95076 0.88274 0.95536 1.67621 1.15561 1.09548 1.26663 1.22992 0.95995 0.94576 0.93094 1.96765 1.96238 1.01298 1.95467 1.23258 1.00609 0.79019 0.99630 0.91482 0.76766 0.89804 0.89626 0.90094 0.91749 0.80345 0.80146 0.77015 0.91517 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -41.13 10.97 21.45 0.24 -40.89 16 2 C 0.04 1.83 5.28 84.66 0.45 2.27 16 3 Si 0.96 37.17 29.54 68.60 2.03 39.20 16 4 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.56 -26.03 8.12 25.60 0.21 -25.82 16 8 H 0.06 2.93 7.76 -2.91 -0.02 2.91 16 9 C 0.23 10.16 0.86 -10.35 -0.01 10.15 16 10 O -0.59 -27.65 13.07 -148.98 -1.95 -29.60 16 11 C -0.11 -4.29 6.23 31.99 0.20 -4.09 16 12 C 0.11 4.14 6.92 86.86 0.60 4.74 16 13 N -0.61 -23.59 3.33 -818.10 -2.72 -26.31 16 14 C 0.56 21.82 7.79 86.77 0.68 22.49 16 15 O -0.54 -22.61 13.79 -3.89 -0.05 -22.66 16 16 C -0.17 -6.06 5.89 -19.98 -0.12 -6.18 16 17 C -0.08 -2.44 8.70 22.73 0.20 -2.24 16 18 C -0.15 -3.49 10.10 22.33 0.23 -3.27 16 19 C 0.13 2.84 11.17 84.71 0.95 3.79 16 20 N -0.48 -14.09 10.31 -189.64 -1.96 -16.05 16 21 C 0.15 5.09 7.21 85.04 0.61 5.70 16 22 Br 0.02 0.57 30.61 -20.37 -0.62 -0.05 16 23 C 0.10 3.90 3.54 86.73 0.31 4.21 16 24 H 0.28 11.81 8.31 -92.71 -0.77 11.04 16 25 H 0.38 18.12 6.98 -74.06 -0.52 17.60 16 26 H 0.08 3.03 8.03 -2.39 -0.02 3.01 16 27 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.08 2.76 7.99 -2.39 -0.02 2.75 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.18 6.08 2.91 -4.02 -0.01 6.07 16 31 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.07 2.78 6.68 -2.39 -0.02 2.77 16 34 H 0.07 2.93 6.40 -2.39 -0.02 2.91 16 Total: -1.00 -54.84 302.20 -0.10 -54.94 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.64 Total: 29.66 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 4.29 Total: 11.75 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -4.44 Total: -83.25 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -2.00 Total: -52.26 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 35 Polarization: 0.57 SS G_CDS: -0.62 Total: -0.05 kcal Total: -54.84 -0.10 -54.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.392 kcal (2) G-P(sol) polarization free energy of solvation -54.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds