Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48507 * 109.47213 * 269.99757 * 3 2 1 5 5 H 1.48501 * 109.47588 * 29.99730 * 3 2 1 6 6 H 1.48505 * 109.47446 * 149.99841 * 3 2 1 7 7 C 1.37876 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00783 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99472 * 0.02562 * 7 2 1 10 10 O 1.42893 * 110.78307 * 303.23545 * 9 7 2 11 11 C 1.55159 * 110.71918 * 179.97438 * 9 7 2 12 12 C 1.54907 * 101.61920 * 206.15543 * 11 9 7 13 13 N 1.47425 * 104.83076 * 36.99327 * 12 11 9 14 14 C 1.34780 * 125.64665 * 155.90795 * 13 12 11 15 15 O 1.21555 * 119.99743 * 176.05550 * 14 13 12 16 16 C 1.47777 * 119.99780 * 356.04978 * 14 13 12 17 17 C 1.40016 * 120.56681 * 36.38114 * 16 14 13 18 18 C 1.38354 * 118.29686 * 179.73408 * 17 16 14 19 19 C 1.38350 * 119.33253 * 0.53414 * 18 17 16 20 20 N 1.31918 * 121.10274 * 359.72220 * 19 18 17 21 21 C 1.31801 * 121.86337 * 0.02562 * 20 19 18 22 22 Br 1.89099 * 119.73333 * 179.97438 * 21 20 19 23 23 C 1.47022 * 108.70460 * 335.87025 * 13 12 11 24 24 H 0.96999 * 120.00560 * 0.02562 * 1 2 3 25 25 H 0.96707 * 113.99780 * 56.76203 * 10 9 7 26 26 H 1.09001 * 110.99839 * 88.06124 * 11 9 7 27 27 H 1.09002 * 111.00447 * 324.25631 * 11 9 7 28 28 H 1.08996 * 110.36535 * 155.83315 * 12 11 9 29 29 H 1.09003 * 110.36731 * 278.15397 * 12 11 9 30 30 H 1.08002 * 120.85104 * 359.96676 * 17 16 14 31 31 H 1.08005 * 120.33221 * 180.26163 * 18 17 16 32 32 H 1.08007 * 119.45003 * 179.75190 * 19 18 17 33 33 H 1.09005 * 109.88185 * 120.47288 * 23 13 12 34 34 H 1.08997 * 109.88361 * 241.48776 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3630 -2.5719 1.1176 11 6 2.2333 -3.7001 0.0005 12 6 1.3766 -4.8039 -0.6683 13 7 0.5954 -4.1007 -1.7020 14 6 0.0737 -4.6629 -2.8104 15 8 -0.6159 -4.0004 -3.5608 16 6 0.3403 -6.0845 -3.1133 17 6 0.4209 -7.0291 -2.0829 18 6 0.6669 -8.3481 -2.4201 19 6 0.8350 -8.6874 -3.7508 20 7 0.7592 -7.7758 -4.7014 21 6 0.5220 -6.5077 -4.4318 22 35 0.4265 -5.2512 -5.8418 23 6 0.4788 -2.6850 -1.3232 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2718 -1.8437 1.1635 26 1 2.5073 -3.9807 1.0176 27 1 3.1200 -3.4797 -0.5939 28 1 2.0182 -5.5576 -1.1248 29 1 0.7115 -5.2632 0.0630 30 1 0.2907 -6.7361 -1.0516 31 1 0.7314 -9.1046 -1.6520 32 1 1.0311 -9.7159 -4.0159 33 1 0.9169 -2.0564 -2.0986 34 1 -0.5702 -2.4238 -1.1833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -29.340295 kcal Electronic energy + Delta-G solvation = -21652.058534 eV Core-core repulsion = 18210.773085 eV Total energy + Delta-G solvation = -3441.285449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.69996 -39.06240 -37.24389 -34.54173 -32.98326 -32.42598 -32.22423 -30.27682 -29.67401 -27.96170 -25.66414 -24.44780 -23.22210 -22.51422 -19.90060 -19.41753 -17.35682 -17.10407 -16.96277 -16.59154 -15.69337 -15.06041 -14.96476 -14.42628 -14.25102 -14.14353 -13.56466 -13.20730 -13.01149 -12.87702 -12.57880 -12.02574 -11.71177 -11.55273 -11.14709 -11.03779 -10.83683 -10.76426 -10.56200 -10.42648 -10.28482 -10.04939 -9.98377 -9.40985 -9.22828 -9.04812 -8.72365 -8.38719 -7.99347 -6.34746 -4.43530 0.45020 0.83838 1.36928 2.94661 3.17962 3.26135 3.27901 3.33209 3.58809 4.19963 4.23384 4.51631 4.57533 4.71270 4.88484 4.93464 5.14430 5.25972 5.56947 5.60852 5.70211 5.74076 5.88096 6.03702 6.17385 6.39208 6.65956 6.75235 6.84441 7.18720 7.28451 7.41510 7.68066 7.91545 8.03451 8.51144 8.60562 9.25281 9.36473 10.73101 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.004072 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.201543 B = 6874.400477 C = 7938.975624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.118 4.118 12 C 0.095 3.905 13 N -0.600 5.600 14 C 0.556 3.444 15 O -0.515 6.515 16 C -0.138 4.138 17 C -0.045 4.045 18 C -0.166 4.166 19 C 0.118 3.882 20 N -0.465 5.465 21 C 0.163 3.837 22 Br 0.021 6.979 23 C 0.102 3.898 24 H 0.272 0.728 25 H 0.387 0.613 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -15.867 -5.351 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.028 4.028 13 N -0.332 5.332 14 C 0.342 3.658 15 O -0.392 6.392 16 C -0.146 4.146 17 C -0.072 4.072 18 C -0.186 4.186 19 C -0.041 4.041 20 N -0.175 5.175 21 C -0.055 4.055 22 Br 0.106 6.894 23 C -0.019 4.019 24 H 0.082 0.918 25 H 0.239 0.761 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.087 0.913 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.722 -15.700 -7.100 17.316 hybrid contribution -0.009 1.244 1.028 1.614 sum 1.712 -14.456 -6.072 15.773 Atomic orbital electron populations 1.69559 1.06039 1.28109 1.49765 1.25065 0.95044 0.99825 0.93230 0.86390 0.79799 0.82307 0.78370 1.20352 1.20932 1.19648 1.21514 0.93746 0.90051 1.52394 0.91429 1.19472 0.85787 0.92135 0.81681 1.86064 1.51263 1.53439 1.48877 1.22783 0.97751 0.94757 1.00337 1.22567 0.94071 0.96087 0.90076 1.48676 1.51764 1.12524 1.20283 1.17499 0.81454 0.85407 0.81443 1.90847 1.37776 1.62858 1.47732 1.20907 1.03648 0.96571 0.93468 1.22153 0.92629 0.92366 1.00032 1.22229 1.01175 0.96916 0.98281 1.22992 0.93676 0.98833 0.88612 1.67563 1.12460 1.00140 1.37372 1.22981 0.98408 0.92564 0.91549 1.96873 1.96627 1.51942 1.43931 1.23146 1.01993 0.77032 0.99727 0.91814 0.76073 0.90300 0.90392 0.91877 0.91349 0.82796 0.83425 0.81545 0.91265 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.23 10.98 55.43 0.61 -22.63 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.63 8.11 -34.44 -0.28 -13.91 16 8 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 9 C 0.25 5.77 0.86 -89.90 -0.08 5.70 16 10 O -0.59 -14.15 13.09 -35.23 -0.46 -14.61 16 11 C -0.12 -2.21 6.22 -24.58 -0.15 -2.37 16 12 C 0.09 1.54 5.15 -2.53 -0.01 1.53 16 13 N -0.60 -11.77 3.33 -171.62 -0.57 -12.34 16 14 C 0.56 10.84 7.23 -12.36 -0.09 10.75 16 15 O -0.52 -11.56 15.11 5.32 0.08 -11.48 16 16 C -0.14 -2.19 5.52 -104.80 -0.58 -2.77 16 17 C -0.04 -0.54 8.04 -38.87 -0.31 -0.85 16 18 C -0.17 -1.49 10.10 -39.50 -0.40 -1.89 16 19 C 0.12 1.16 11.17 -17.47 -0.20 0.97 16 20 N -0.47 -6.39 10.31 -11.29 -0.12 -6.51 16 21 C 0.16 2.57 7.19 -17.03 -0.12 2.45 16 22 Br 0.02 0.35 31.29 -68.01 -2.13 -1.78 16 23 C 0.10 2.37 5.54 -3.04 -0.02 2.35 16 24 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.39 9.73 6.98 45.56 0.32 10.04 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 28 H 0.06 0.85 6.63 -51.93 -0.34 0.51 16 29 H 0.07 1.02 7.26 -51.93 -0.38 0.65 16 30 H 0.15 1.65 5.59 -52.49 -0.29 1.35 16 31 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.07 1.75 7.81 -51.93 -0.41 1.35 16 34 H 0.07 1.73 8.07 -51.93 -0.42 1.31 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -29.35 306.07 -8.07 -37.42 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.75 Total: 8.61 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.33 Total: 3.69 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.08 Total: -41.47 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.38 Total: -26.09 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -2.13 Total: -1.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.35 -8.07 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.083 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds