Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29953 * 125.30911 * 2 1 4 4 O 1.41867 * 107.41782 * 180.02562 * 3 2 1 5 5 N 1.41875 * 106.38817 * 359.78128 * 4 3 2 6 6 C 1.29954 * 107.41438 * 0.37035 * 5 4 3 7 7 C 1.50691 * 125.30294 * 179.89437 * 6 5 4 8 8 C 1.50703 * 109.47082 * 269.69002 * 7 6 5 9 9 O 1.21281 * 119.99882 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99946 * 180.02562 * 8 7 6 11 11 C 1.38894 * 119.99999 * 180.02562 * 10 8 7 12 12 N 1.29945 * 125.36578 * 179.97438 * 11 10 8 13 13 C 1.31594 * 117.13542 * 179.97438 * 12 11 10 14 14 C 1.50700 * 122.22842 * 179.97438 * 13 12 11 15 15 C 1.34655 * 115.53998 * 0.02562 * 13 12 11 16 16 S 1.76199 * 125.92642 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99817 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.38427 * 120.00042 * 179.97438 * 17 16 15 20 20 N 1.31814 * 120.00176 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99992 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47109 * 89.99870 * 21 19 17 23 23 H 1.48498 * 109.46940 * 209.99575 * 21 19 17 24 24 H 1.48492 * 109.47073 * 330.00119 * 21 19 17 25 25 S 1.76144 * 125.36176 * 359.96800 * 11 10 8 26 26 H 1.09007 * 109.46803 * 270.00086 * 1 2 3 27 27 H 1.09006 * 109.47155 * 29.99184 * 1 2 3 28 28 H 1.08997 * 109.47605 * 149.99662 * 1 2 3 29 29 H 1.09007 * 109.47380 * 149.69444 * 7 6 5 30 30 H 1.09003 * 109.47725 * 29.69353 * 7 6 5 31 31 H 0.96998 * 119.99873 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.46787 * 90.02278 * 14 13 12 33 33 H 1.08997 * 109.47275 * 210.02758 * 14 13 12 34 34 H 1.08996 * 109.47286 * 330.03501 * 14 13 12 35 35 H 0.96996 * 120.00296 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6081 0.6246 -0.0006 5 7 3.5709 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8209 -2.5713 -0.0003 8 6 1.6531 -3.0451 -1.4211 9 8 1.9137 -2.3015 -2.3431 10 7 1.2125 -4.2949 -1.6671 11 6 1.0584 -4.7318 -2.9765 12 7 0.6433 -5.9106 -3.3321 13 6 0.5572 -6.1526 -4.6228 14 6 0.0903 -7.4800 -5.1622 15 6 0.9152 -5.1354 -5.4292 16 16 0.9061 -5.1604 -7.1910 17 6 1.4815 -3.5284 -7.5232 18 1 1.7162 -2.8620 -6.7064 19 6 1.6326 -3.1006 -8.8309 20 7 2.0626 -1.8796 -9.0794 21 14 1.2259 -4.2531 -10.2437 22 1 -0.2021 -4.0925 -10.6181 23 1 2.0835 -3.9268 -11.4112 24 1 1.4729 -5.6561 -9.8247 25 16 1.3948 -3.7749 -4.4167 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 0.8610 -2.6186 0.5141 30 1 2.5400 -3.2096 0.5130 31 1 1.0037 -4.8895 -0.9297 32 1 -0.9918 -7.4591 -5.2919 33 1 0.5679 -7.6699 -6.1234 34 1 0.3569 -8.2711 -4.4614 35 1 2.1689 -1.5799 -9.9958 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845373827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = 95.394820 kcal Electronic energy + Delta-G solvation = -23556.755915 eV Core-core repulsion = 19812.396401 eV Total energy + Delta-G solvation = -3744.359514 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.045 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.83735 -40.27795 -38.73609 -35.09062 -34.84516 -33.72030 -32.80425 -31.03706 -29.73625 -29.01650 -27.22948 -25.95364 -24.31979 -22.69058 -21.53966 -20.95252 -19.86407 -18.28741 -17.94846 -17.15921 -17.01832 -16.12122 -16.05040 -15.85917 -15.33249 -14.86994 -14.69970 -14.48164 -14.19604 -14.04578 -13.74503 -13.32056 -13.26358 -12.91467 -12.83301 -12.23855 -12.08991 -12.01433 -11.94246 -11.63232 -11.43231 -11.37083 -11.25248 -10.90200 -10.87203 -10.76245 -10.19174 -10.10026 -9.54513 -9.26788 -8.94020 -8.85216 -7.98457 -6.80933 -6.60033 -4.34336 0.27909 1.17523 1.55896 1.72125 2.16389 2.30105 2.38613 2.66265 2.77608 2.88445 3.06814 3.16046 3.32227 3.41990 3.50299 3.98605 4.06639 4.33974 4.39693 4.42127 4.64870 4.79969 4.82712 4.95153 4.97663 5.02900 5.28899 5.51472 5.79069 5.92529 6.06535 6.25352 6.29157 6.65302 6.74312 6.92535 7.62487 7.68404 8.18776 8.32056 8.79147 10.47737 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003291 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.084666 B = 8505.053082 C =10062.457255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.087 3.913 3 N -0.275 5.275 4 O 0.032 5.968 5 N -0.256 5.256 6 C 0.091 3.909 7 C -0.069 4.069 8 C 0.508 3.492 9 O -0.491 6.491 10 N -0.610 5.610 11 C 0.185 3.815 12 N -0.475 5.475 13 C 0.029 3.971 14 C -0.063 4.063 15 C -0.236 4.236 16 S 0.061 5.939 17 C -0.547 4.547 18 H 0.105 0.895 19 C 0.102 3.898 20 N -0.855 5.855 21 Si 0.852 3.148 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.236 1.236 25 S 0.233 5.767 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.417 0.583 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 -4.040 19.018 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 N -0.020 5.020 4 O -0.110 6.110 5 N 0.002 4.998 6 C -0.093 4.093 7 C -0.110 4.110 8 C 0.291 3.709 9 O -0.364 6.364 10 N -0.259 5.259 11 C -0.185 4.185 12 N -0.197 5.197 13 C -0.113 4.113 14 C -0.123 4.123 15 C -0.473 4.473 16 S 0.309 5.691 17 C -0.696 4.696 18 H 0.122 0.878 19 C -0.109 4.109 20 N -0.488 5.488 21 Si 0.676 3.324 22 H -0.185 1.185 23 H -0.189 1.189 24 H -0.160 1.160 25 S 0.478 5.522 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.188 -2.621 17.529 18.212 hybrid contribution -0.615 -0.757 0.231 1.002 sum -4.802 -3.377 17.760 18.705 Atomic orbital electron populations 1.20604 0.84143 1.05898 1.04602 1.24503 1.00343 0.88701 0.95987 1.79939 0.88975 1.19482 1.13605 1.93409 1.20262 1.12969 1.84391 1.79913 1.17230 0.91733 1.10916 1.23646 0.90239 0.97379 0.98022 1.20178 1.05762 0.89673 0.95360 1.20276 0.78164 0.81202 0.91274 1.90816 1.47303 1.53245 1.45028 1.42208 1.64257 1.14330 1.05105 1.23888 1.09263 0.95095 0.90241 1.65839 1.18625 1.17169 1.18065 1.19098 1.09243 0.97639 0.85302 1.20151 1.00664 0.91266 1.00213 1.28198 1.11383 1.01620 1.06057 1.82480 1.76232 1.20556 0.89850 1.22670 1.52320 0.96825 0.97751 0.87769 1.24750 0.92860 0.95175 0.98160 1.70008 1.40980 1.16107 1.21689 0.86814 0.80187 0.82723 0.82714 1.18492 1.18905 1.15979 1.86250 1.63623 1.11034 0.91308 0.88402 0.88771 0.88829 0.84624 0.84969 0.74483 0.91659 0.91076 0.91662 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.05 36.00 0.36 -0.20 16 2 C 0.09 0.90 7.19 -82.38 -0.59 0.30 16 3 N -0.27 -3.65 12.98 33.74 0.44 -3.21 16 4 O 0.03 0.48 13.71 12.03 0.16 0.65 16 5 N -0.26 -3.49 12.98 33.74 0.44 -3.05 16 6 C 0.09 0.95 5.68 -82.38 -0.47 0.48 16 7 C -0.07 -0.44 5.87 -29.04 -0.17 -0.61 16 8 C 0.51 5.91 7.78 -10.98 -0.09 5.83 16 9 O -0.49 -8.34 13.55 5.56 0.08 -8.27 16 10 N -0.61 -7.12 5.40 -11.78 -0.06 -7.18 16 11 C 0.19 3.18 8.40 -87.19 -0.73 2.45 16 12 N -0.48 -8.58 10.55 -9.78 -0.10 -8.68 16 13 C 0.03 0.57 6.73 -83.96 -0.57 0.00 16 14 C -0.06 -1.00 10.02 36.01 0.36 -0.63 16 15 C -0.24 -5.14 6.67 29.46 0.20 -4.94 16 16 S 0.06 1.42 18.70 -107.50 -2.01 -0.60 16 17 C -0.55 -15.02 9.80 30.80 0.30 -14.72 16 18 H 0.10 3.08 6.21 -52.49 -0.33 2.75 16 19 C 0.10 2.80 5.49 -17.49 -0.10 2.70 16 20 N -0.85 -24.55 13.98 55.47 0.78 -23.78 16 21 Si 0.85 19.39 27.73 -169.99 -4.71 14.68 16 22 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.24 -5.11 6.73 56.52 0.38 -4.73 16 25 S 0.23 4.93 18.35 -107.50 -1.97 2.96 16 26 H 0.10 0.29 8.14 -51.92 -0.42 -0.14 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.46 7.77 -51.93 -0.40 0.06 16 29 H 0.14 0.22 7.78 -51.93 -0.40 -0.18 16 30 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.42 3.09 8.82 -40.82 -0.36 2.73 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.11 7.37 -51.93 -0.38 0.73 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.28 7.31 8.32 -40.82 -0.34 6.98 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -35.60 339.55 -6.49 -42.09 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -3.15 Total: -1.40 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.49 Total: -9.33 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 1.48 Total: -45.90 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.24 Total: -7.62 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.68 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -3.98 Total: 2.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.60 -6.49 -42.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845373827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.487 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds