Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48495 * 109.47180 * 270.00248 * 3 2 1 5 5 H 1.48497 * 109.47136 * 30.00257 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99927 * 3 2 1 7 7 C 1.37875 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99629 * 173.37800 * 7 2 1 9 9 C 1.50692 * 120.00144 * 353.38275 * 7 2 1 10 10 C 1.52998 * 115.55197 * 85.36318 * 9 7 2 11 11 N 1.46499 * 109.47312 * 65.09464 * 10 9 7 12 12 C 1.39199 * 120.00239 * 180.73350 * 11 10 9 13 13 C 1.39197 * 120.30552 * 0.02562 * 12 11 10 14 14 C 1.37342 * 120.89308 * 179.73533 * 13 12 11 15 15 C 1.40643 * 120.38096 * 0.56098 * 14 13 12 16 16 C 1.40474 * 117.54837 * 359.69936 * 15 14 13 17 17 C 1.36161 * 122.19672 * 0.02562 * 16 15 14 18 18 S 1.77154 * 102.97714 * 180.02562 * 16 15 14 19 19 O 1.42095 * 107.61040 * 111.99122 * 18 16 15 20 20 O 1.42097 * 107.61142 * 248.01624 * 18 16 15 21 21 N 1.67251 * 99.43657 * 0.02562 * 18 16 15 22 22 C 1.28763 * 106.24303 * 0.02562 * 21 18 16 23 23 Cl 1.73601 * 120.30996 * 180.02562 * 22 21 18 24 24 C 1.53004 * 117.49779 * 231.03128 * 9 7 2 25 25 C 1.52998 * 117.49861 * 299.69100 * 9 7 2 26 26 H 0.97003 * 120.00760 * 5.05778 * 1 2 3 27 27 H 1.09002 * 109.47247 * 305.09500 * 10 9 7 28 28 H 1.09004 * 109.47403 * 185.09442 * 10 9 7 29 29 H 0.97001 * 119.99984 * 1.01351 * 11 10 9 30 30 H 1.08005 * 119.55175 * 0.02562 * 13 12 11 31 31 H 1.07996 * 119.81136 * 180.23851 * 14 13 12 32 32 H 1.07996 * 120.20434 * 180.02562 * 17 16 15 33 33 H 1.08998 * 117.49846 * 215.00044 * 24 9 7 34 34 H 1.08994 * 117.49989 * 0.02562 * 24 9 7 35 35 H 1.08999 * 117.50149 * 359.97394 * 25 9 7 36 36 H 1.09005 * 117.49985 * 144.98024 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1084 9 6 1.2586 -2.4948 0.1493 10 6 0.6983 -3.0871 -1.1454 11 7 1.8044 -3.4595 -2.0308 12 6 1.5397 -4.0090 -3.2821 13 6 0.2263 -4.2070 -3.6987 14 6 -0.0488 -4.7432 -4.9328 15 6 0.9975 -5.1141 -5.7964 16 6 2.3131 -4.9084 -5.3491 17 6 2.5887 -4.3718 -4.1283 18 16 3.2907 -5.4948 -6.7051 19 8 3.9422 -4.3718 -7.2826 20 8 3.9593 -6.6726 -6.2753 21 7 2.0661 -5.9587 -7.7455 22 6 0.9604 -5.7002 -7.1384 23 17 -0.5599 -6.0456 -7.9020 24 6 1.7510 -3.4724 1.2183 25 6 0.4464 -2.7000 1.4295 26 1 -0.4851 0.8367 -0.0741 27 1 0.0694 -2.3476 -1.6410 28 1 0.1051 -3.9717 -0.9134 29 1 2.7214 -3.3269 -1.7436 30 1 -0.5874 -3.9309 -3.0444 31 1 -1.0743 -4.8856 -5.2398 32 1 3.6127 -4.2274 -3.8170 33 1 1.6757 -4.5375 0.9993 34 1 2.6141 -3.1745 1.8135 35 1 0.4518 -1.8943 2.1636 36 1 -0.4874 -3.2567 1.3494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853565503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = 17.929834 kcal Electronic energy + Delta-G solvation = -24048.553159 eV Core-core repulsion = 20266.498054 eV Total energy + Delta-G solvation = -3782.055105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34853 -38.39826 -37.34525 -37.27288 -36.58625 -35.96167 -34.40586 -32.22682 -31.50836 -29.80276 -26.49888 -25.56868 -23.88330 -23.64000 -21.81219 -21.35313 -19.62497 -19.48400 -17.82241 -17.72149 -17.05468 -16.32600 -16.09327 -15.67858 -15.27544 -14.92058 -14.51158 -14.35421 -14.21044 -14.03315 -13.69864 -13.38198 -13.08627 -12.95956 -12.46170 -12.34103 -12.24643 -12.18271 -11.80498 -11.67507 -11.37417 -11.22018 -11.15247 -10.84081 -10.72298 -10.55535 -10.51213 -10.27859 -9.88748 -9.65521 -9.15931 -8.74129 -8.52540 -7.54458 -6.32967 -4.42430 -0.31615 -0.07447 0.91932 1.24528 1.52717 2.68372 3.11746 3.11888 3.20736 3.22933 3.34486 3.45293 3.55517 4.16880 4.32002 4.61708 4.80616 4.91754 4.95312 5.02491 5.14633 5.40837 5.51755 5.62332 5.64840 5.91747 5.96350 5.99732 6.04693 6.16860 6.23859 6.43090 6.49872 6.79591 7.03114 7.14326 7.30939 7.57952 7.70967 8.05304 8.59310 9.26969 10.74603 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.002955 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.290327 B = 9473.068023 C = 9825.070543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.148 3.852 11 N -0.677 5.677 12 C 0.277 3.723 13 C -0.195 4.195 14 C 0.041 3.959 15 C -0.245 4.245 16 C -0.552 4.552 17 C -0.072 4.072 18 S 2.581 3.419 19 O -0.930 6.930 20 O -0.932 6.932 21 N -0.839 5.839 22 C 0.375 3.625 23 Cl 0.006 6.994 24 C -0.209 4.209 25 C -0.144 4.144 26 H 0.264 0.736 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.412 0.588 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 -9.752 -8.208 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.024 3.976 10 C 0.025 3.975 11 N -0.292 5.292 12 C 0.157 3.843 13 C -0.218 4.218 14 C 0.018 3.982 15 C -0.255 4.255 16 C -0.640 4.640 17 C -0.095 4.095 18 S 2.668 3.332 19 O -0.919 6.919 20 O -0.921 6.921 21 N -0.670 5.670 22 C 0.169 3.831 23 Cl 0.035 6.965 24 C -0.247 4.247 25 C -0.182 4.182 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.249 0.751 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.211 -9.978 -8.990 13.611 hybrid contribution -0.269 1.444 0.959 1.754 sum -2.480 -8.534 -8.031 11.978 Atomic orbital electron populations 1.69934 1.05940 1.27324 1.47849 1.24963 0.94842 0.99111 0.93861 0.86607 0.80022 0.83194 0.78389 1.20480 1.20994 1.19703 1.20330 0.92985 0.88483 1.52568 0.92101 1.18960 0.99111 0.94219 0.85340 1.21429 0.87355 0.97133 0.91534 1.45429 1.11805 1.59320 1.12600 1.18563 0.93802 0.86494 0.85450 1.20708 0.95594 1.07526 0.98011 1.20730 0.97751 0.89073 0.90604 1.19074 0.95531 1.16595 0.94309 1.30622 1.10864 1.09473 1.13019 1.19423 0.99029 0.99817 0.91273 1.06450 0.76741 0.75387 0.74666 1.93690 1.72276 1.50736 1.75228 1.93681 1.71613 1.46095 1.80703 1.77388 1.12104 1.35585 1.41876 1.24160 0.90062 0.81336 0.87550 1.98472 1.26126 1.91375 1.80568 1.23062 0.98900 0.95590 1.07125 1.22513 0.92298 1.01096 1.02285 0.92621 0.90039 0.93718 0.75142 0.83671 0.84188 0.83919 0.91484 0.90099 0.89598 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.71 12.92 55.43 0.72 -20.99 16 2 C 0.08 1.85 5.39 -17.82 -0.10 1.75 16 3 Si 0.89 19.16 29.55 -169.99 -5.02 14.14 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.51 -11.63 8.66 -34.44 -0.30 -11.93 16 8 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 9 C 0.02 0.48 1.37 -155.66 -0.21 0.27 16 10 C 0.15 2.52 4.74 -4.04 -0.02 2.50 16 11 N -0.68 -10.00 5.63 -58.50 -0.33 -10.33 16 12 C 0.28 3.73 6.68 -83.66 -0.56 3.17 16 13 C -0.19 -2.33 9.26 -39.55 -0.37 -2.70 16 14 C 0.04 0.43 9.88 -39.00 -0.39 0.05 16 15 C -0.24 -2.98 6.08 -104.83 -0.64 -3.62 16 16 C -0.55 -7.45 6.56 -39.49 -0.26 -7.71 16 17 C -0.07 -0.95 9.87 -39.83 -0.39 -1.34 16 18 S 2.58 37.99 6.48 -107.50 -0.70 37.29 16 19 O -0.93 -15.95 18.09 -56.99 -1.03 -16.98 16 20 O -0.93 -15.59 18.09 -56.99 -1.03 -16.62 16 21 N -0.84 -11.66 11.98 29.29 0.35 -11.31 16 22 C 0.37 4.54 7.34 -15.52 -0.11 4.43 16 23 Cl 0.01 0.06 29.02 -51.86 -1.51 -1.44 16 24 C -0.21 -3.74 9.96 -26.69 -0.27 -4.00 16 25 C -0.14 -2.82 9.42 -26.69 -0.25 -3.07 16 26 H 0.26 6.37 8.32 -40.82 -0.34 6.03 16 27 H 0.08 1.56 7.91 -51.93 -0.41 1.15 16 28 H 0.04 0.68 7.93 -51.93 -0.41 0.27 16 29 H 0.41 5.93 8.41 -40.82 -0.34 5.58 16 30 H 0.15 1.61 6.71 -52.48 -0.35 1.26 16 31 H 0.14 1.02 8.05 -52.49 -0.42 0.60 16 32 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -28.39 344.07 -10.82 -39.21 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.60 Total: 4.04 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -3.86 Total: -22.20 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.74 Total: -42.63 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -2.06 Total: -33.60 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 37.99 SS G_CDS: -0.70 Total: 37.29 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.51 Total: -1.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.39 -10.82 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853565503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.143 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds