Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48495 * 109.47180 * 270.00248 * 3 2 1 5 5 H 1.48497 * 109.47136 * 30.00257 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99927 * 3 2 1 7 7 C 1.37875 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99629 * 173.37800 * 7 2 1 9 9 C 1.50692 * 120.00144 * 353.38275 * 7 2 1 10 10 C 1.52998 * 115.55197 * 85.36318 * 9 7 2 11 11 N 1.46499 * 109.47312 * 65.09464 * 10 9 7 12 12 C 1.39199 * 120.00239 * 180.73350 * 11 10 9 13 13 C 1.39197 * 120.30552 * 0.02562 * 12 11 10 14 14 C 1.37342 * 120.89308 * 179.73533 * 13 12 11 15 15 C 1.40643 * 120.38096 * 0.56098 * 14 13 12 16 16 C 1.40474 * 117.54837 * 359.69936 * 15 14 13 17 17 C 1.36161 * 122.19672 * 0.02562 * 16 15 14 18 18 S 1.77154 * 102.97714 * 180.02562 * 16 15 14 19 19 O 1.42095 * 107.61040 * 111.99122 * 18 16 15 20 20 O 1.42097 * 107.61142 * 248.01624 * 18 16 15 21 21 N 1.67251 * 99.43657 * 0.02562 * 18 16 15 22 22 C 1.28763 * 106.24303 * 0.02562 * 21 18 16 23 23 Cl 1.73601 * 120.30996 * 180.02562 * 22 21 18 24 24 C 1.53004 * 117.49779 * 231.03128 * 9 7 2 25 25 C 1.52998 * 117.49861 * 299.69100 * 9 7 2 26 26 H 0.97003 * 120.00760 * 5.05778 * 1 2 3 27 27 H 1.09002 * 109.47247 * 305.09500 * 10 9 7 28 28 H 1.09004 * 109.47403 * 185.09442 * 10 9 7 29 29 H 0.97001 * 119.99984 * 1.01351 * 11 10 9 30 30 H 1.08005 * 119.55175 * 0.02562 * 13 12 11 31 31 H 1.07996 * 119.81136 * 180.23851 * 14 13 12 32 32 H 1.07996 * 120.20434 * 180.02562 * 17 16 15 33 33 H 1.08998 * 117.49846 * 215.00044 * 24 9 7 34 34 H 1.08994 * 117.49989 * 0.02562 * 24 9 7 35 35 H 1.08999 * 117.50149 * 359.97394 * 25 9 7 36 36 H 1.09005 * 117.49985 * 144.98024 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1084 9 6 1.2586 -2.4948 0.1493 10 6 0.6983 -3.0871 -1.1454 11 7 1.8044 -3.4595 -2.0308 12 6 1.5397 -4.0090 -3.2821 13 6 0.2263 -4.2070 -3.6987 14 6 -0.0488 -4.7432 -4.9328 15 6 0.9975 -5.1141 -5.7964 16 6 2.3131 -4.9084 -5.3491 17 6 2.5887 -4.3718 -4.1283 18 16 3.2907 -5.4948 -6.7051 19 8 3.9422 -4.3718 -7.2826 20 8 3.9593 -6.6726 -6.2753 21 7 2.0661 -5.9587 -7.7455 22 6 0.9604 -5.7002 -7.1384 23 17 -0.5599 -6.0456 -7.9020 24 6 1.7510 -3.4724 1.2183 25 6 0.4464 -2.7000 1.4295 26 1 -0.4851 0.8367 -0.0741 27 1 0.0694 -2.3476 -1.6410 28 1 0.1051 -3.9717 -0.9134 29 1 2.7214 -3.3269 -1.7436 30 1 -0.5874 -3.9309 -3.0444 31 1 -1.0743 -4.8856 -5.2398 32 1 3.6127 -4.2274 -3.8170 33 1 1.6757 -4.5375 0.9993 34 1 2.6141 -3.1745 1.8135 35 1 0.4518 -1.8943 2.1636 36 1 -0.4874 -3.2567 1.3494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853565503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -0.529079 kcal Electronic energy + Delta-G solvation = -24049.353598 eV Core-core repulsion = 20266.498054 eV Total energy + Delta-G solvation = -3782.855544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.043 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36156 -39.51849 -38.57870 -38.48649 -37.65711 -37.19271 -35.55970 -33.99947 -32.48090 -30.90059 -27.91749 -27.10705 -24.97504 -24.63564 -22.99724 -22.70376 -21.15973 -20.59186 -18.88433 -18.79133 -18.43306 -17.49596 -17.45016 -16.80146 -16.61961 -16.39071 -15.81001 -15.51765 -15.28905 -15.11766 -14.84572 -14.53827 -14.47739 -13.94641 -13.73853 -13.59594 -13.48043 -13.43837 -13.28314 -12.94256 -12.88770 -12.54652 -12.40888 -12.28382 -12.04956 -11.91719 -11.58327 -11.47352 -11.45298 -10.77226 -10.60531 -10.46351 -10.06816 -8.63512 -8.14135 -6.24759 -1.33024 -1.17543 -0.05209 0.26662 0.53938 1.38620 1.44885 1.49526 1.60950 2.00131 2.30062 2.37934 2.40757 2.55905 3.15681 3.38724 3.45325 3.51174 3.84588 4.00549 4.12640 4.21517 4.50020 4.53735 4.57793 4.62933 4.64222 4.71588 4.90346 5.00695 5.02038 5.06980 5.29205 5.39262 5.59694 5.64723 5.75893 6.11335 6.35313 6.59546 6.81180 7.45081 8.92357 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015404 B = 0.002955 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.290327 B = 9473.068023 C = 9825.070543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.038 3.962 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.005 3.995 10 C 0.166 3.834 11 N -0.684 5.684 12 C 0.266 3.734 13 C -0.195 4.195 14 C 0.056 3.944 15 C -0.244 4.244 16 C -0.561 4.561 17 C -0.077 4.077 18 S 2.590 3.410 19 O -0.962 6.962 20 O -0.959 6.959 21 N -0.850 5.850 22 C 0.376 3.624 23 Cl 0.040 6.960 24 C -0.185 4.185 25 C -0.153 4.153 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.412 0.588 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.156 0.844 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -10.877 -8.689 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.164 4.164 3 Si 0.762 3.238 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.004 3.996 10 C 0.042 3.958 11 N -0.301 5.301 12 C 0.149 3.851 13 C -0.219 4.219 14 C 0.033 3.967 15 C -0.254 4.254 16 C -0.651 4.651 17 C -0.100 4.100 18 S 2.679 3.321 19 O -0.952 6.952 20 O -0.948 6.948 21 N -0.682 5.682 22 C 0.172 3.828 23 Cl 0.069 6.931 24 C -0.222 4.222 25 C -0.192 4.192 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.248 0.752 30 H 0.175 0.825 31 H 0.197 0.803 32 H 0.174 0.826 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.493 -11.123 -9.507 15.043 hybrid contribution 0.055 1.743 1.062 2.042 sum -3.439 -9.379 -8.445 13.081 Atomic orbital electron populations 1.70003 1.06608 1.27342 1.49537 1.25455 0.95388 1.01146 0.94416 0.85921 0.79020 0.80962 0.77903 1.20741 1.21450 1.19753 1.20619 0.92923 0.90059 1.51077 0.92849 1.19033 0.99694 0.93988 0.86901 1.21035 0.87539 0.97146 0.90046 1.45202 1.11151 1.60666 1.13078 1.18676 0.94569 0.86880 0.85018 1.20977 0.95294 1.06937 0.98645 1.21096 0.99108 0.87067 0.89385 1.19247 0.95465 1.16229 0.94445 1.30384 1.11227 1.10634 1.12867 1.19636 0.99982 0.99324 0.91063 1.06005 0.76912 0.74429 0.74765 1.93636 1.73674 1.51699 1.76171 1.93631 1.72918 1.47016 1.81281 1.77432 1.12450 1.36866 1.41463 1.24310 0.90776 0.80231 0.87506 1.98487 1.23697 1.90916 1.80041 1.23032 0.97491 0.96593 1.05122 1.22448 0.93935 1.01114 1.01655 0.93035 0.92502 0.91554 0.75172 0.82481 0.80343 0.82594 0.88759 0.90706 0.92428 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.81 12.92 21.45 0.28 -44.53 16 2 C 0.04 1.81 5.39 84.65 0.46 2.27 16 3 Si 0.93 39.55 29.55 68.60 2.03 41.57 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.51 -23.30 8.66 25.60 0.22 -23.08 16 8 H 0.05 2.46 7.82 -2.91 -0.02 2.44 16 9 C 0.00 0.17 1.37 -52.93 -0.07 0.10 16 10 C 0.17 5.36 4.74 86.38 0.41 5.77 16 11 N -0.68 -19.18 5.63 -339.00 -1.91 -21.09 16 12 C 0.27 6.67 6.68 38.53 0.26 6.93 16 13 C -0.19 -4.11 9.26 22.29 0.21 -3.90 16 14 C 0.06 0.98 9.88 22.65 0.22 1.20 16 15 C -0.24 -5.35 6.08 -20.00 -0.12 -5.47 16 16 C -0.56 -14.46 6.56 22.33 0.15 -14.32 16 17 C -0.08 -1.92 9.87 22.11 0.22 -1.70 16 18 S 2.59 75.85 6.48 -56.49 -0.37 75.48 16 19 O -0.96 -33.39 18.09 -128.18 -2.32 -35.71 16 20 O -0.96 -32.26 18.09 -128.18 -2.32 -34.58 16 21 N -0.85 -22.72 11.98 -61.24 -0.73 -23.45 16 22 C 0.38 8.31 7.34 87.29 0.64 8.95 16 23 Cl 0.04 0.65 29.02 -2.72 -0.08 0.57 16 24 C -0.19 -6.25 9.96 30.62 0.30 -5.95 16 25 C -0.15 -5.86 9.42 30.62 0.29 -5.57 16 26 H 0.26 12.70 8.32 -92.71 -0.77 11.93 16 27 H 0.06 2.12 7.91 -2.39 -0.02 2.10 16 28 H 0.07 1.84 7.93 -2.38 -0.02 1.82 16 29 H 0.41 11.40 8.41 -92.71 -0.78 10.62 16 30 H 0.16 2.98 6.71 -2.91 -0.02 2.96 16 31 H 0.18 1.73 8.05 -2.91 -0.02 1.71 16 32 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 36 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 Total: -1.00 -60.72 344.07 -1.88 -62.60 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.36 Total: 13.91 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 3.18 Total: -34.77 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -2.37 Total: -89.07 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -4.64 Total: -70.29 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.57 kcal Atomic # 16 Polarization: 75.85 SS G_CDS: -0.37 Total: 75.48 kcal Atomic # 17 Polarization: 0.65 SS G_CDS: -0.08 Total: 0.57 kcal Total: -60.72 -1.88 -62.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853565503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.066 kcal (2) G-P(sol) polarization free energy of solvation -60.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds