Wall clock time and date at job start Sat Apr 11 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48503 * 109.46879 * 274.99617 * 3 2 1 5 5 H 1.48499 * 109.47113 * 34.99805 * 3 2 1 6 6 H 1.48500 * 109.46765 * 154.99891 * 3 2 1 7 7 C 1.37875 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00258 * 172.62214 * 7 2 1 9 9 C 1.50706 * 120.00251 * 352.61777 * 7 2 1 10 10 O 1.42905 * 110.88344 * 303.82693 * 9 7 2 11 11 C 1.55151 * 111.00512 * 179.97438 * 9 7 2 12 12 C 1.54328 * 102.94243 * 206.38489 * 11 9 7 13 13 N 1.47023 * 107.26908 * 22.19592 * 12 11 9 14 14 C 1.34772 * 125.64854 * 181.02335 * 13 12 11 15 15 O 1.21561 * 120.00157 * 185.08713 * 14 13 12 16 16 C 1.47770 * 120.00140 * 5.08861 * 14 13 12 17 17 C 1.39633 * 120.15391 * 312.21012 * 16 14 13 18 18 C 1.37894 * 119.85983 * 180.25227 * 17 16 14 19 19 C 1.38421 * 120.18937 * 359.47050 * 18 17 16 20 20 C 1.38269 * 120.31105 * 0.28211 * 19 18 17 21 21 N 1.48020 * 119.92759 * 179.97438 * 20 19 18 22 22 O 1.21795 * 120.00639 * 359.97438 * 21 20 19 23 23 O 1.21813 * 119.99309 * 179.97438 * 21 20 19 24 24 C 1.38147 * 120.13354 * 359.97252 * 20 19 18 25 25 Cl 1.73602 * 120.09198 * 180.02562 * 24 20 19 26 26 C 1.47424 * 108.70570 * 1.28425 * 13 12 11 27 27 H 0.96996 * 119.99413 * 359.97438 * 1 2 3 28 28 H 0.96698 * 113.99885 * 56.12108 * 10 9 7 29 29 H 1.09002 * 110.72113 * 88.02598 * 11 9 7 30 30 H 1.09001 * 110.72076 * 324.74991 * 11 9 7 31 31 H 1.08996 * 109.88582 * 262.77806 * 12 11 9 32 32 H 1.09003 * 110.01080 * 141.67910 * 12 11 9 33 33 H 1.07999 * 120.06366 * 0.02562 * 17 16 14 34 34 H 1.08007 * 119.90368 * 179.74790 * 18 17 16 35 35 H 1.07996 * 119.84463 * 180.29637 * 19 18 17 36 36 H 1.09000 * 110.36825 * 94.47889 * 26 13 12 37 37 H 1.08998 * 110.37238 * 216.81299 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5035 2.6199 0.8030 6 1 3.5956 1.4118 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0778 -1.1980 -0.1206 9 6 1.2604 -2.4939 0.1666 10 8 0.4912 -2.4893 1.3710 11 6 2.2348 -3.7007 0.1342 12 6 1.3397 -4.8545 -0.3650 13 7 0.2040 -4.2495 -1.0761 14 6 -0.8151 -4.9229 -1.6456 15 8 -1.6551 -4.3243 -2.2889 16 6 -0.9114 -6.3891 -1.4881 17 6 0.2086 -7.1933 -1.7086 18 6 0.1106 -8.5612 -1.5650 19 6 -1.0914 -9.1376 -1.1923 20 6 -2.2038 -8.3479 -0.9670 21 7 -3.4852 -8.9733 -0.5694 22 8 -3.5590 -10.1823 -0.4414 23 8 -4.4658 -8.2787 -0.3702 24 6 -2.1218 -6.9766 -1.1122 25 17 -3.5190 -5.9860 -0.8284 26 6 0.3677 -2.7844 -1.0685 27 1 -0.4849 0.8401 0.0004 28 1 -0.1322 -1.7531 1.4367 29 1 2.6179 -3.9140 1.1322 30 1 3.0525 -3.5176 -0.5629 31 1 0.9786 -5.4370 0.4825 32 1 1.9021 -5.4964 -1.0431 33 1 1.1486 -6.7451 -1.9947 34 1 0.9754 -9.1843 -1.7394 35 1 -1.1607 -10.2091 -1.0768 36 1 0.8610 -2.4530 -1.9823 37 1 -0.6002 -2.2950 -0.9599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862099133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:45 Heat of formation + Delta-G solvation = -44.562039 kcal Electronic energy + Delta-G solvation = -27391.067068 eV Core-core repulsion = 23163.549241 eV Total energy + Delta-G solvation = -4227.517827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.34850 -40.47841 -38.86753 -37.32042 -36.92827 -36.53540 -34.53827 -32.55981 -32.29990 -31.67780 -30.24512 -28.08945 -26.78160 -25.75480 -24.13809 -22.99201 -22.43762 -20.37174 -19.81611 -18.86180 -18.58479 -17.72465 -17.42179 -17.17522 -16.72749 -16.33106 -15.53436 -15.15085 -15.03823 -14.73559 -14.43510 -14.05464 -13.49227 -13.19653 -13.03372 -12.85566 -12.64806 -12.18808 -12.10774 -11.95569 -11.77686 -11.65474 -11.53561 -11.22566 -11.12837 -10.92192 -10.77328 -10.60342 -10.49237 -10.33244 -10.07243 -9.72039 -9.50656 -9.41899 -8.82965 -8.54337 -8.02820 -6.39863 -4.49701 -0.49316 0.20849 1.02676 1.06002 1.65994 2.50484 2.94208 3.13128 3.22183 3.24392 3.27980 3.93035 4.07220 4.17295 4.30978 4.35870 4.46045 4.81157 4.88708 5.07938 5.16304 5.28039 5.40133 5.48691 5.59975 5.72335 5.82138 5.97265 6.15658 6.31350 6.54006 6.67348 6.72740 7.09400 7.18163 7.48357 7.62608 7.84344 7.88745 8.32976 8.53759 9.19617 9.24966 10.66765 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.003209 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.785944 B = 8724.057689 C = 9381.343849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.582 6.582 11 C -0.117 4.117 12 C 0.097 3.903 13 N -0.596 5.596 14 C 0.561 3.439 15 O -0.518 6.518 16 C -0.106 4.106 17 C -0.033 4.033 18 C -0.118 4.118 19 C -0.034 4.034 20 C -0.049 4.049 21 N 0.029 4.971 22 O -0.164 6.164 23 O -0.134 6.134 24 C 0.052 3.948 25 Cl 0.022 6.978 26 C 0.095 3.905 27 H 0.272 0.728 28 H 0.384 0.616 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.066 0.934 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -16.400 -2.634 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.155 4.155 12 C -0.026 4.026 13 N -0.328 5.328 14 C 0.346 3.654 15 O -0.395 6.395 16 C -0.111 4.111 17 C -0.052 4.052 18 C -0.137 4.137 19 C -0.053 4.053 20 C -0.133 4.133 21 N 0.550 4.450 22 O -0.377 6.377 23 O -0.355 6.355 24 C 0.022 3.978 25 Cl 0.053 6.947 26 C -0.025 4.025 27 H 0.082 0.918 28 H 0.235 0.765 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.084 0.916 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.434 -16.135 -3.049 16.600 hybrid contribution -0.332 1.250 -0.041 1.294 sum 2.102 -14.885 -3.090 15.347 Atomic orbital electron populations 1.69707 1.06015 1.28144 1.49030 1.25088 0.95031 0.99891 0.93149 0.86386 0.79939 0.82400 0.78199 1.20475 1.20838 1.19588 1.21454 0.94408 0.90154 1.51999 0.91348 1.19631 0.86508 0.91855 0.81100 1.86090 1.57565 1.54088 1.41347 1.22641 0.97455 0.94150 1.01275 1.22232 0.87774 0.97187 0.95369 1.48704 1.21449 1.10235 1.52459 1.17356 0.82133 0.84807 0.81100 1.90849 1.39950 1.68489 1.40180 1.20123 0.91801 0.96369 1.02809 1.21963 0.97990 0.93539 0.91718 1.21245 0.97543 0.94767 1.00161 1.21194 0.89825 1.01648 0.92623 1.20754 0.86727 0.91634 1.14219 1.43370 1.02250 1.00985 0.98442 1.94518 1.90858 0.96550 1.55750 1.94659 1.26413 1.61972 1.52430 1.20775 0.91667 0.89580 0.95794 1.98515 1.36015 1.67743 1.92468 1.23505 1.03170 0.74811 1.01040 0.91813 0.76479 0.90421 0.90147 0.91984 0.92462 0.82378 0.82335 0.81869 0.91591 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.72 10.75 55.43 0.60 -22.13 16 2 C 0.07 1.79 5.25 -17.82 -0.09 1.69 16 3 Si 0.90 19.44 29.54 -169.99 -5.02 14.41 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -13.19 8.24 -34.44 -0.28 -13.47 16 8 H 0.07 1.62 7.78 -52.49 -0.41 1.22 16 9 C 0.25 5.58 0.89 -89.50 -0.08 5.50 16 10 O -0.58 -13.99 13.19 -35.23 -0.46 -14.45 16 11 C -0.12 -2.05 6.12 -24.90 -0.15 -2.21 16 12 C 0.10 1.46 5.65 -3.06 -0.02 1.44 16 13 N -0.60 -11.02 3.32 -171.52 -0.57 -11.59 16 14 C 0.56 10.28 6.93 -12.37 -0.09 10.20 16 15 O -0.52 -11.29 16.08 5.31 0.09 -11.21 16 16 C -0.11 -1.51 5.41 -104.94 -0.57 -2.08 16 17 C -0.03 -0.32 8.53 -39.19 -0.33 -0.66 16 18 C -0.12 -0.82 10.03 -39.64 -0.40 -1.22 16 19 C -0.03 -0.29 9.55 -39.50 -0.38 -0.67 16 20 C -0.05 -0.62 6.85 -79.97 -0.55 -1.17 16 21 N 0.03 0.41 4.45 33.95 0.15 0.57 16 22 O -0.16 -2.24 18.44 -29.46 -0.54 -2.78 16 23 O -0.13 -2.11 16.01 -29.47 -0.47 -2.58 16 24 C 0.05 0.76 6.34 -39.07 -0.25 0.51 16 25 Cl 0.02 0.38 24.11 -51.86 -1.25 -0.87 16 26 C 0.10 2.11 5.53 -2.41 -0.01 2.09 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.38 9.64 7.21 45.56 0.33 9.97 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.63 6.00 -51.93 -0.31 0.32 16 33 H 0.16 1.20 5.96 -52.49 -0.31 0.89 16 34 H 0.16 0.47 8.06 -52.48 -0.42 0.05 16 35 H 0.16 1.01 7.60 -52.49 -0.40 0.61 16 36 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 37 H 0.09 2.24 7.52 -51.93 -0.39 1.85 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -29.40 333.31 -8.39 -37.79 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -2.73 Total: 7.86 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.20 Total: -0.03 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.18 Total: -33.15 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.39 Total: -31.02 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.25 Total: -0.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.40 -8.39 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.772 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds