Wall clock time and date at job start Sat Apr 11 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.53006 * 109.47539 * 240.00147 * 2 1 3 5 5 N 1.46497 * 109.47271 * 119.99903 * 2 1 3 6 6 N 1.40062 * 125.83789 * 240.73329 * 5 2 1 7 7 C 1.30548 * 109.50462 * 179.90746 * 6 5 2 8 8 Br 1.89096 * 125.84350 * 179.54981 * 7 6 5 9 9 C 1.40791 * 108.30667 * 359.55403 * 7 6 5 10 10 C 1.35886 * 125.84068 * 60.00150 * 5 2 1 11 11 N 1.34221 * 134.18096 * 0.02562 * 10 5 2 12 12 C 1.30080 * 121.88506 * 179.97438 * 11 10 5 13 13 N 1.36081 * 122.98351 * 0.02562 * 12 11 10 14 14 C 1.37191 * 119.87754 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00346 * 208.73160 * 14 13 12 16 16 C 1.39044 * 120.00636 * 28.73365 * 14 13 12 17 17 N 1.31279 * 119.99264 * 17.86488 * 16 14 13 18 18 Si 1.86793 * 120.00519 * 197.86459 * 16 14 13 19 19 H 1.48498 * 109.47051 * 89.99873 * 18 16 14 20 20 H 1.48500 * 109.47509 * 209.99671 * 18 16 14 21 21 H 1.48501 * 109.47177 * 330.00068 * 18 16 14 22 22 C 1.35366 * 120.23848 * 359.97438 * 13 12 11 23 23 O 1.21802 * 121.23879 * 179.97438 * 22 13 12 24 24 H 1.08997 * 109.46831 * 299.99749 * 1 2 3 25 25 H 1.08996 * 109.46923 * 60.00103 * 1 2 3 26 26 H 1.09004 * 109.46672 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47257 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47184 * 300.00279 * 3 2 1 29 29 H 1.09004 * 109.47021 * 60.00042 * 3 2 1 30 30 H 1.09003 * 109.46712 * 300.00067 * 4 2 1 31 31 H 1.08998 * 109.46775 * 59.99659 * 4 2 1 32 32 H 1.08993 * 109.47069 * 179.97438 * 4 2 1 33 33 H 1.07994 * 118.50821 * 180.02562 * 12 11 10 34 34 H 0.97007 * 119.99273 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 2.8150 -0.1268 2.2007 7 6 3.0618 -1.0241 3.1163 8 35 4.1034 -0.7608 4.6724 9 6 2.4198 -2.2213 2.7466 10 6 1.7643 -1.9836 1.5278 11 7 1.0640 -2.9757 0.9561 12 6 0.9781 -4.1559 1.4963 13 7 1.5832 -4.4785 2.6717 14 6 1.4496 -5.7440 3.1844 15 1 1.4963 -5.9020 4.2518 16 6 1.2542 -6.8233 2.3299 17 7 1.5409 -6.7104 1.0538 18 14 0.5837 -8.4339 2.9976 19 1 -0.8992 -8.4228 2.9201 20 1 1.1131 -9.5628 2.1911 21 1 1.0042 -8.5964 4.4126 22 6 2.3164 -3.5552 3.3369 23 8 2.8653 -3.8241 4.3904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 0.4002 -4.9142 0.9890 34 1 1.4049 -7.4636 0.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863372255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:50 Heat of formation + Delta-G solvation = 66.501511 kcal Electronic energy + Delta-G solvation = -21992.327738 eV Core-core repulsion = 18587.491053 eV Total energy + Delta-G solvation = -3404.836685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26398 -39.25925 -36.47208 -36.20586 -34.30584 -31.93534 -31.34495 -29.11717 -28.95025 -27.25305 -27.23762 -25.87050 -23.63368 -22.40521 -21.26809 -19.24384 -18.52554 -17.39860 -16.80984 -15.81892 -15.45380 -15.11310 -14.50259 -14.29059 -14.04428 -13.62902 -13.36698 -13.31351 -12.97444 -12.32794 -12.22251 -12.13987 -12.11227 -11.83234 -11.57480 -11.46238 -11.25036 -11.16466 -11.10407 -10.69849 -10.60464 -10.40332 -9.98829 -9.83285 -9.07812 -8.98034 -8.88833 -8.32897 -7.49990 -7.01768 -4.67805 1.56287 1.64524 2.39273 2.84228 2.94384 2.98428 3.03795 3.17596 3.65389 4.18253 4.27683 4.62431 4.84883 4.90292 4.97588 5.05045 5.44976 5.51906 5.62632 5.64208 5.77456 5.80992 5.86902 5.88929 5.95301 6.15478 6.36192 6.38793 6.47428 6.68327 6.96458 7.24407 7.46948 7.82911 7.94134 8.21820 8.53727 9.00783 9.21999 10.00074 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.005650 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.122189 B = 4954.507919 C = 7075.584038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.193 3.807 3 C -0.141 4.141 4 C -0.161 4.161 5 N -0.360 5.360 6 N -0.265 5.265 7 C 0.145 3.855 8 Br 0.030 6.970 9 C -0.350 4.350 10 C 0.359 3.641 11 N -0.581 5.581 12 C 0.404 3.596 13 N -0.356 5.356 14 C -0.339 4.339 15 H 0.121 0.879 16 C 0.047 3.953 17 N -0.850 5.850 18 Si 0.945 3.055 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.261 1.261 22 C 0.537 3.463 23 O -0.531 6.531 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.209 0.791 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 9.283 -3.145 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.110 3.890 3 C -0.199 4.199 4 C -0.219 4.219 5 N -0.151 5.151 6 N -0.086 5.086 7 C -0.105 4.105 8 Br 0.111 6.889 9 C -0.369 4.369 10 C 0.119 3.881 11 N -0.315 5.315 12 C 0.120 3.880 13 N -0.057 5.057 14 C -0.467 4.467 15 H 0.138 0.862 16 C -0.163 4.163 17 N -0.482 5.482 18 Si 0.769 3.231 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.185 1.185 22 C 0.333 3.667 23 O -0.408 6.408 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.059 10.580 -3.204 11.105 hybrid contribution -0.035 -1.738 0.609 1.842 sum -1.094 8.843 -2.595 9.280 Atomic orbital electron populations 1.22243 0.93042 1.04360 1.02237 1.20619 0.94327 0.92637 0.81394 1.21895 1.02298 0.93237 1.02433 1.22242 1.01644 1.02585 0.95451 1.48327 1.42256 1.05918 1.18555 1.77030 1.13276 1.20158 0.98129 1.23122 0.99460 0.92833 0.95042 1.96661 1.66904 1.97211 1.28122 1.20770 1.17074 0.96475 1.02573 1.19074 0.92578 0.86578 0.89860 1.67371 1.29458 0.99197 1.35488 1.24858 0.88113 0.90909 0.84081 1.42743 1.33213 1.11909 1.17824 1.20145 1.50581 0.80579 0.95427 0.86179 1.25677 0.94449 1.00888 0.95294 1.69751 1.39212 1.34786 1.04496 0.85610 0.79315 0.78490 0.79715 1.19147 1.20129 1.18527 1.17575 0.79632 0.83598 0.85870 1.90728 1.46696 1.80989 1.22348 0.92355 0.90876 0.90066 0.91548 0.91234 0.91538 0.89982 0.90876 0.92342 0.77510 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.52 37.16 0.32 -1.80 16 2 C 0.19 2.83 1.21 -131.82 -0.16 2.67 16 3 C -0.14 -1.74 7.97 37.16 0.30 -1.44 16 4 C -0.16 -2.19 8.52 37.16 0.32 -1.88 16 5 N -0.36 -6.88 3.48 -47.76 -0.17 -7.05 16 6 N -0.26 -5.32 11.53 32.03 0.37 -4.95 16 7 C 0.15 3.14 7.73 -17.13 -0.13 3.01 16 8 Br 0.03 0.56 33.83 -68.01 -2.30 -1.74 16 9 C -0.35 -8.34 6.36 -104.90 -0.67 -9.01 16 10 C 0.36 7.83 7.10 -155.90 -1.11 6.72 16 11 N -0.58 -12.42 9.19 -13.35 -0.12 -12.55 16 12 C 0.40 9.08 10.25 -89.77 -0.92 8.16 16 13 N -0.36 -8.86 2.76 -64.02 -0.18 -9.04 16 14 C -0.34 -8.39 9.13 -14.85 -0.14 -8.52 16 15 H 0.12 3.04 7.61 -52.49 -0.40 2.64 16 16 C 0.05 1.06 4.98 -17.49 -0.09 0.97 16 17 N -0.85 -19.58 11.20 55.50 0.62 -18.95 16 18 Si 0.95 17.47 29.59 -169.99 -5.03 12.44 16 19 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 C 0.54 13.93 7.61 -12.78 -0.10 13.84 16 23 O -0.53 -14.66 16.76 5.10 0.09 -14.57 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.21 7.38 -51.93 -0.38 0.83 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.28 7.38 -51.93 -0.38 0.90 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.21 4.46 6.12 -52.49 -0.32 4.13 16 34 H 0.29 6.09 8.31 -40.82 -0.34 5.75 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -27.75 312.83 -7.96 -35.72 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.58 Total: 3.25 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -2.38 Total: 12.73 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.53 Total: -52.54 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 35 Polarization: 0.56 SS G_CDS: -2.30 Total: -1.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.75 -7.96 -35.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863372255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.217 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds