Wall clock time and date at job start Sat Apr 11 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.53006 * 109.47539 * 240.00147 * 2 1 3 5 5 N 1.46497 * 109.47271 * 119.99903 * 2 1 3 6 6 N 1.40062 * 125.83789 * 240.73329 * 5 2 1 7 7 C 1.30548 * 109.50462 * 179.90746 * 6 5 2 8 8 Br 1.89096 * 125.84350 * 179.54981 * 7 6 5 9 9 C 1.40791 * 108.30667 * 359.55403 * 7 6 5 10 10 C 1.35886 * 125.84068 * 60.00150 * 5 2 1 11 11 N 1.34221 * 134.18096 * 0.02562 * 10 5 2 12 12 C 1.30080 * 121.88506 * 179.97438 * 11 10 5 13 13 N 1.36081 * 122.98351 * 0.02562 * 12 11 10 14 14 C 1.37191 * 119.87754 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00346 * 208.73160 * 14 13 12 16 16 C 1.39044 * 120.00636 * 28.73365 * 14 13 12 17 17 N 1.31279 * 119.99264 * 17.86488 * 16 14 13 18 18 Si 1.86793 * 120.00519 * 197.86459 * 16 14 13 19 19 H 1.48498 * 109.47051 * 89.99873 * 18 16 14 20 20 H 1.48500 * 109.47509 * 209.99671 * 18 16 14 21 21 H 1.48501 * 109.47177 * 330.00068 * 18 16 14 22 22 C 1.35366 * 120.23848 * 359.97438 * 13 12 11 23 23 O 1.21802 * 121.23879 * 179.97438 * 22 13 12 24 24 H 1.08997 * 109.46831 * 299.99749 * 1 2 3 25 25 H 1.08996 * 109.46923 * 60.00103 * 1 2 3 26 26 H 1.09004 * 109.46672 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47257 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47184 * 300.00279 * 3 2 1 29 29 H 1.09004 * 109.47021 * 60.00042 * 3 2 1 30 30 H 1.09003 * 109.46712 * 300.00067 * 4 2 1 31 31 H 1.08998 * 109.46775 * 59.99659 * 4 2 1 32 32 H 1.08993 * 109.47069 * 179.97438 * 4 2 1 33 33 H 1.07994 * 118.50821 * 180.02562 * 12 11 10 34 34 H 0.97007 * 119.99273 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 7 2.8150 -0.1268 2.2007 7 6 3.0618 -1.0241 3.1163 8 35 4.1034 -0.7608 4.6724 9 6 2.4198 -2.2213 2.7466 10 6 1.7643 -1.9836 1.5278 11 7 1.0640 -2.9757 0.9561 12 6 0.9781 -4.1559 1.4963 13 7 1.5832 -4.4785 2.6717 14 6 1.4496 -5.7440 3.1844 15 1 1.4963 -5.9020 4.2518 16 6 1.2542 -6.8233 2.3299 17 7 1.5409 -6.7104 1.0538 18 14 0.5837 -8.4339 2.9976 19 1 -0.8992 -8.4228 2.9201 20 1 1.1131 -9.5628 2.1911 21 1 1.0042 -8.5964 4.4126 22 6 2.3164 -3.5552 3.3369 23 8 2.8653 -3.8241 4.3904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 0.4002 -4.9142 0.9890 34 1 1.4049 -7.4636 0.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863372255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:49 Heat of formation + Delta-G solvation = 52.017227 kcal Electronic energy + Delta-G solvation = -21992.955824 eV Core-core repulsion = 18587.491053 eV Total energy + Delta-G solvation = -3405.464771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.97435 -40.99734 -38.18897 -37.66506 -36.07871 -33.73216 -32.92473 -30.72911 -30.65148 -28.36662 -28.31322 -27.61419 -25.41288 -24.12762 -22.79781 -20.95999 -20.19555 -19.00126 -18.54575 -17.58119 -17.11804 -16.67572 -16.06920 -15.83591 -15.54448 -15.25883 -14.94501 -14.72608 -14.59496 -13.95632 -13.68701 -13.33818 -13.24323 -13.12952 -13.08412 -12.85817 -12.67559 -12.59627 -12.42502 -12.14219 -11.90905 -11.89266 -11.62988 -11.48606 -10.92398 -10.77094 -10.64425 -9.95172 -9.29693 -8.76517 -6.54596 -0.09103 -0.02636 0.59758 1.30160 1.37031 1.44826 1.47858 1.59352 2.05701 2.43697 2.51250 3.05330 3.18465 3.42219 3.74663 3.81775 3.93653 3.99590 4.09432 4.59114 4.63318 4.66607 4.71677 4.76867 4.84709 4.88380 4.97410 5.14226 5.16965 5.29495 5.35090 5.49407 5.81918 6.03630 6.24078 6.39739 6.71100 7.19323 7.33489 8.27719 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.005650 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.122189 B = 4954.507919 C = 7075.584038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 C -0.135 4.135 4 C -0.155 4.155 5 N -0.348 5.348 6 N -0.249 5.249 7 C 0.125 3.875 8 Br 0.051 6.949 9 C -0.375 4.375 10 C 0.348 3.652 11 N -0.563 5.563 12 C 0.403 3.597 13 N -0.364 5.364 14 C -0.378 4.378 15 H 0.102 0.898 16 C 0.025 3.975 17 N -0.868 5.868 18 Si 1.013 2.987 19 H -0.250 1.250 20 H -0.267 1.267 21 H -0.271 1.271 22 C 0.517 3.483 23 O -0.566 6.566 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.218 0.782 34 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 10.056 -5.046 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.094 3.906 3 C -0.192 4.192 4 C -0.213 4.213 5 N -0.139 5.139 6 N -0.071 5.071 7 C -0.125 4.125 8 Br 0.132 6.868 9 C -0.393 4.393 10 C 0.108 3.892 11 N -0.296 5.296 12 C 0.119 3.881 13 N -0.066 5.066 14 C -0.505 4.505 15 H 0.120 0.880 16 C -0.184 4.184 17 N -0.501 5.501 18 Si 0.833 3.167 19 H -0.174 1.174 20 H -0.192 1.192 21 H -0.195 1.195 22 C 0.314 3.686 23 O -0.446 6.446 24 H 0.070 0.930 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.067 0.933 33 H 0.234 0.766 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.060 11.413 -5.169 12.697 hybrid contribution 0.289 -1.848 1.084 2.162 sum -1.772 9.565 -4.085 10.551 Atomic orbital electron populations 1.22233 0.91532 1.03541 1.03967 1.21291 0.95579 0.93854 0.79914 1.21908 1.01699 0.91483 1.04119 1.22233 1.00995 1.01631 0.96485 1.48930 1.40851 1.05020 1.19058 1.76991 1.12509 1.19711 0.97850 1.23369 1.00364 0.92402 0.96346 1.96646 1.66172 1.97014 1.26983 1.20972 1.18256 0.96417 1.03643 1.19210 0.92625 0.87723 0.89656 1.67430 1.28625 0.98795 1.34725 1.25101 0.88104 0.91448 0.83437 1.42844 1.33385 1.11991 1.18342 1.20208 1.53590 0.81460 0.95243 0.87975 1.26490 0.93355 1.03265 0.95282 1.69766 1.38708 1.36234 1.05344 0.84650 0.79392 0.74271 0.78425 1.17389 1.19166 1.19499 1.18010 0.79816 0.84702 0.86054 1.90667 1.48424 1.81784 1.23753 0.92973 0.86784 0.92117 0.92471 0.87178 0.92228 0.92300 0.86707 0.93331 0.76629 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.52 71.98 0.61 -3.03 16 2 C 0.17 4.69 1.21 3.61 0.00 4.69 16 3 C -0.13 -2.88 7.97 71.98 0.57 -2.30 16 4 C -0.16 -3.83 8.52 71.98 0.61 -3.21 16 5 N -0.35 -13.01 3.48 -305.02 -1.06 -14.07 16 6 N -0.25 -9.87 11.53 -52.57 -0.61 -10.47 16 7 C 0.12 5.45 7.73 85.51 0.66 6.12 16 8 Br 0.05 1.92 33.83 -20.37 -0.69 1.23 16 9 C -0.37 -18.26 6.36 -20.05 -0.13 -18.39 16 10 C 0.35 15.27 7.10 133.86 0.95 16.22 16 11 N -0.56 -24.20 9.19 -196.14 -1.80 -26.00 16 12 C 0.40 18.44 10.25 180.05 1.85 20.29 16 13 N -0.36 -18.78 2.76 -474.31 -1.31 -20.08 16 14 C -0.38 -19.32 9.13 84.05 0.77 -18.55 16 15 H 0.10 5.46 7.61 -2.91 -0.02 5.43 16 16 C 0.02 1.11 4.98 84.97 0.42 1.53 16 17 N -0.87 -39.71 11.20 21.67 0.24 -39.46 16 18 Si 1.01 35.29 29.59 68.60 2.03 37.32 16 19 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 20 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 C 0.52 27.91 7.61 86.23 0.66 28.56 16 23 O -0.57 -32.79 16.76 -4.68 -0.08 -32.86 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.70 7.38 -2.38 -0.02 1.68 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.74 7.38 -2.39 -0.02 1.73 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.22 9.37 6.12 -2.91 -0.02 9.35 16 34 H 0.30 12.29 8.31 -92.70 -0.77 11.52 16 Total: -1.00 -61.93 312.83 4.85 -57.08 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.14 Total: 15.39 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 6.98 Total: 31.93 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -4.54 Total: -110.09 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.08 Total: -32.86 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Atomic # 35 Polarization: 1.92 SS G_CDS: -0.69 Total: 1.23 kcal Total: -61.93 4.85 -57.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863372255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.098 kcal (2) G-P(sol) polarization free energy of solvation -61.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds