Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86804 * 120.00260 * 2 1 4 4 H 1.48503 * 109.46790 * 239.99405 * 3 2 1 5 5 H 1.48500 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47033 * 119.99798 * 3 2 1 7 7 C 1.40169 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00335 * 169.76516 * 7 2 1 9 9 C 1.40368 * 120.00004 * 349.76721 * 7 2 1 10 10 C 1.44306 * 123.74571 * 337.39331 * 9 7 2 11 11 C 1.32568 * 114.45712 * 179.97438 * 10 9 7 12 12 S 1.75463 * 111.42552 * 359.73481 * 11 10 9 13 13 C 1.39697 * 123.74958 * 157.37080 * 9 7 2 14 14 C 1.41808 * 125.24558 * 0.02562 * 13 9 7 15 15 N 1.32835 * 126.75214 * 180.27094 * 14 13 9 16 16 C 1.33916 * 105.50905 * 180.15046 * 15 14 13 17 17 C 1.50698 * 126.11562 * 179.90768 * 16 15 14 18 18 H 1.09006 * 110.01122 * 359.01402 * 17 16 15 19 19 C 1.53873 * 110.02983 * 237.63215 * 17 16 15 20 20 C 1.54271 * 108.64786 * 193.51543 * 19 17 16 21 21 S 1.82922 * 105.10401 * 27.88882 * 20 19 17 22 22 O 1.42094 * 109.35228 * 244.48182 * 21 20 19 23 23 O 1.42104 * 109.47475 * 111.31308 * 21 20 19 24 24 C 1.55044 * 110.02596 * 120.39134 * 17 16 15 25 25 N 1.30201 * 107.76723 * 359.64573 * 16 15 14 26 26 O 1.21285 * 110.62582 * 0.22433 * 25 16 15 27 27 H 0.97000 * 119.99458 * 0.02562 * 1 2 3 28 28 H 1.08003 * 122.76780 * 359.93882 * 10 9 7 29 29 H 1.08009 * 124.28768 * 179.97438 * 11 10 9 30 30 H 1.08998 * 109.64810 * 313.33548 * 19 17 16 31 31 H 1.09005 * 109.64179 * 73.62789 * 19 17 16 32 32 H 1.09000 * 110.31085 * 268.98424 * 20 19 17 33 33 H 1.09005 * 110.39967 * 146.83933 * 20 19 17 34 34 H 1.09010 * 110.79001 * 280.04158 * 24 17 16 35 35 H 1.08999 * 110.79234 * 43.31246 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6962 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0083 -1.2139 0.0005 8 1 3.0754 -1.2215 -0.1656 9 6 1.3232 -2.4198 0.2170 10 6 0.0512 -2.5089 0.8927 11 6 -0.4305 -3.7397 0.9956 12 16 0.6446 -4.9127 0.2562 13 6 1.7967 -3.6667 -0.1980 14 6 3.0165 -3.8915 -0.8855 15 7 3.4927 -5.0610 -1.2979 16 6 4.6625 -4.7835 -1.8877 17 6 5.5971 -5.7819 -2.5205 18 1 5.1927 -6.7889 -2.4173 19 6 6.9833 -5.7001 -1.8576 20 6 7.9948 -6.4690 -2.7326 21 16 7.3295 -6.3649 -4.4334 22 8 6.9860 -7.6676 -4.8852 23 8 8.1765 -5.5420 -5.2239 24 6 5.8005 -5.4426 -4.0197 25 7 4.8453 -3.4960 -1.8214 26 8 3.9172 -2.9615 -1.2524 27 1 -0.4849 0.8401 -0.0004 28 1 -0.4653 -1.6444 1.2829 29 1 -1.3681 -3.9884 1.4707 30 1 7.2889 -4.6571 -1.7746 31 1 6.9415 -6.1477 -0.8645 32 1 8.0570 -7.5094 -2.4136 33 1 8.9767 -5.9985 -2.6808 34 1 4.9601 -5.8001 -4.6148 35 1 5.9424 -4.3708 -4.1580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866875571.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = 10.483761 kcal Electronic energy + Delta-G solvation = -24203.862829 eV Core-core repulsion = 20423.528544 eV Total energy + Delta-G solvation = -3780.334285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -44.16783 -37.35650 -37.12282 -36.79476 -36.13932 -34.23542 -33.51887 -31.86667 -30.09318 -28.86594 -26.58696 -25.88116 -23.11844 -22.98256 -21.82543 -20.31952 -19.05804 -18.98763 -17.89075 -16.96646 -16.88324 -16.54697 -15.96632 -15.78157 -15.70259 -15.31956 -14.63577 -14.24915 -14.14379 -13.91367 -12.92322 -12.74659 -12.66766 -12.42945 -12.35467 -12.31193 -12.24962 -12.13422 -11.88830 -11.74138 -11.50642 -11.30648 -11.03666 -10.91917 -10.72967 -10.71789 -10.47755 -10.33901 -9.89967 -9.84207 -9.44203 -9.41935 -7.65825 -7.46980 -7.29051 -4.93410 -0.13037 1.51209 2.29038 2.57855 2.75151 2.75950 2.78340 2.81652 3.28048 3.30018 3.45938 3.50841 3.71373 3.78432 4.06608 4.27807 4.48206 4.51976 4.60030 4.64683 4.77809 4.83188 5.16048 5.35667 5.43178 5.51927 5.77182 5.82088 5.90054 6.32405 6.38299 6.76422 6.77794 6.99456 7.10075 7.20293 7.32759 7.83320 8.05354 8.12101 9.30850 9.39668 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.003174 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.114456 B = 8820.898412 C =10169.815383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.068 3.932 3 Si 0.928 3.072 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.360 4.360 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.108 4.108 11 C -0.203 4.203 12 S 0.031 5.969 13 C -0.349 4.349 14 C 0.326 3.674 15 N -0.559 5.559 16 C 0.181 3.819 17 C 0.013 3.987 18 H 0.118 0.882 19 C -0.108 4.108 20 C -0.588 4.588 21 S 2.392 3.608 22 O -0.937 6.937 23 O -0.939 6.939 24 C -0.580 4.580 25 N -0.431 5.431 26 O 0.050 5.950 27 H 0.298 0.702 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -3.620 -0.197 7.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.158 4.158 3 Si 0.750 3.250 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.391 4.391 8 H 0.122 0.878 9 C 0.119 3.881 10 C -0.141 4.141 11 C -0.338 4.338 12 S 0.286 5.714 13 C -0.470 4.470 14 C 0.125 3.875 15 N -0.297 5.297 16 C -0.094 4.094 17 C -0.008 4.008 18 H 0.136 0.864 19 C -0.147 4.147 20 C -0.718 4.718 21 S 2.576 3.424 22 O -0.934 6.934 23 O -0.936 6.936 24 C -0.710 4.710 25 N -0.154 5.154 26 O -0.001 6.001 27 H 0.109 0.891 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.006 -5.429 -1.639 9.014 hybrid contribution -0.356 2.617 1.012 2.828 sum 6.650 -2.812 -0.627 7.247 Atomic orbital electron populations 1.69676 1.08186 1.31565 1.27726 1.26399 0.95129 1.02923 0.91371 0.85962 0.80120 0.77641 0.81253 1.17758 1.19489 1.17823 1.19925 0.97194 0.89549 1.32423 0.87794 1.18102 0.90637 0.91109 0.88227 1.21529 0.96126 0.96560 0.99883 1.25247 1.03617 0.97586 1.07349 1.83275 1.14262 1.09980 1.63836 1.19240 1.01226 0.97072 1.29438 1.23336 0.91139 0.81245 0.91750 1.72280 1.09885 1.24004 1.23546 1.24425 0.94010 0.90715 1.00255 1.19893 0.93097 0.98178 0.89641 0.86431 1.21983 0.90019 1.02375 1.00326 1.30485 1.09592 1.09998 1.21686 1.08959 0.78637 0.76257 0.78585 1.93620 1.83434 1.37014 1.79302 1.93613 1.64530 1.69318 1.66101 1.30792 1.20819 1.15545 1.03868 1.74292 1.11182 1.09614 1.20315 1.85446 1.23502 1.35319 1.55805 0.89063 0.83380 0.83813 0.88811 0.88424 0.84283 0.84143 0.83966 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -15.51 10.78 55.56 0.60 -14.91 16 2 C 0.07 1.40 5.39 -17.29 -0.09 1.31 16 3 Si 0.93 15.65 29.57 -169.99 -5.03 10.62 16 4 H -0.25 -4.41 7.11 56.52 0.40 -4.01 16 5 H -0.27 -4.34 7.11 56.52 0.40 -3.94 16 6 H -0.25 -4.25 7.11 56.52 0.40 -3.85 16 7 C -0.36 -8.21 8.64 -38.06 -0.33 -8.54 16 8 H 0.10 2.38 6.14 -52.49 -0.32 2.05 16 9 C 0.13 3.10 5.69 -106.17 -0.60 2.49 16 10 C -0.11 -2.33 9.04 -39.11 -0.35 -2.68 16 11 C -0.20 -3.98 11.05 28.83 0.32 -3.66 16 12 S 0.03 0.65 23.16 -107.50 -2.49 -1.84 16 13 C -0.35 -8.28 6.34 -37.67 -0.24 -8.52 16 14 C 0.33 7.70 7.88 -16.02 -0.13 7.58 16 15 N -0.56 -12.45 11.57 -11.42 -0.13 -12.58 16 16 C 0.18 3.48 6.76 -156.68 -1.06 2.42 16 17 C 0.01 0.18 3.10 -90.24 -0.28 -0.10 16 18 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 19 C -0.11 -1.15 5.75 -25.61 -0.15 -1.30 16 20 C -0.59 -4.64 7.27 37.82 0.27 -4.37 16 21 S 2.39 25.10 6.10 -107.50 -0.66 24.45 16 22 O -0.94 -12.56 18.14 -57.73 -1.05 -13.60 16 23 O -0.94 -12.88 18.15 -57.73 -1.05 -13.93 16 24 C -0.58 -6.81 6.66 38.24 0.25 -6.56 16 25 N -0.43 -9.01 12.00 31.38 0.38 -8.63 16 26 O 0.05 1.16 9.18 15.66 0.14 1.30 16 27 H 0.30 5.45 8.29 -40.82 -0.34 5.11 16 28 H 0.15 3.10 6.35 -52.48 -0.33 2.77 16 29 H 0.14 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.09 1.05 8.01 -51.93 -0.42 0.64 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.14 1.54 8.14 -51.92 -0.42 1.11 16 35 H 0.14 1.76 8.05 -51.93 -0.42 1.34 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -30.67 329.17 -9.86 -40.53 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.16 Total: 5.56 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -2.38 Total: -21.93 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.84 Total: -36.13 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.95 Total: -26.23 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.62 kcal Atomic # 16 Polarization: 25.76 SS G_CDS: -3.15 Total: 22.61 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.67 -9.86 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866875571.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.018 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds