Wall clock time and date at job start Sat Apr 11 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86804 * 120.00260 * 2 1 4 4 H 1.48503 * 109.46790 * 239.99405 * 3 2 1 5 5 H 1.48500 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47033 * 119.99798 * 3 2 1 7 7 C 1.40169 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00335 * 169.76516 * 7 2 1 9 9 C 1.40368 * 120.00004 * 349.76721 * 7 2 1 10 10 C 1.44306 * 123.74571 * 337.39331 * 9 7 2 11 11 C 1.32568 * 114.45712 * 179.97438 * 10 9 7 12 12 S 1.75463 * 111.42552 * 359.73481 * 11 10 9 13 13 C 1.39697 * 123.74958 * 157.37080 * 9 7 2 14 14 C 1.41808 * 125.24558 * 0.02562 * 13 9 7 15 15 N 1.32835 * 126.75214 * 180.27094 * 14 13 9 16 16 C 1.33916 * 105.50905 * 180.15046 * 15 14 13 17 17 C 1.50698 * 126.11562 * 179.90768 * 16 15 14 18 18 H 1.09006 * 110.01122 * 359.01402 * 17 16 15 19 19 C 1.53873 * 110.02983 * 237.63215 * 17 16 15 20 20 C 1.54271 * 108.64786 * 193.51543 * 19 17 16 21 21 S 1.82922 * 105.10401 * 27.88882 * 20 19 17 22 22 O 1.42094 * 109.35228 * 244.48182 * 21 20 19 23 23 O 1.42104 * 109.47475 * 111.31308 * 21 20 19 24 24 C 1.55044 * 110.02596 * 120.39134 * 17 16 15 25 25 N 1.30201 * 107.76723 * 359.64573 * 16 15 14 26 26 O 1.21285 * 110.62582 * 0.22433 * 25 16 15 27 27 H 0.97000 * 119.99458 * 0.02562 * 1 2 3 28 28 H 1.08003 * 122.76780 * 359.93882 * 10 9 7 29 29 H 1.08009 * 124.28768 * 179.97438 * 11 10 9 30 30 H 1.08998 * 109.64810 * 313.33548 * 19 17 16 31 31 H 1.09005 * 109.64179 * 73.62789 * 19 17 16 32 32 H 1.09000 * 110.31085 * 268.98424 * 20 19 17 33 33 H 1.09005 * 110.39967 * 146.83933 * 20 19 17 34 34 H 1.09010 * 110.79001 * 280.04158 * 24 17 16 35 35 H 1.08999 * 110.79234 * 43.31246 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6962 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0083 -1.2139 0.0005 8 1 3.0754 -1.2215 -0.1656 9 6 1.3232 -2.4198 0.2170 10 6 0.0512 -2.5089 0.8927 11 6 -0.4305 -3.7397 0.9956 12 16 0.6446 -4.9127 0.2562 13 6 1.7967 -3.6667 -0.1980 14 6 3.0165 -3.8915 -0.8855 15 7 3.4927 -5.0610 -1.2979 16 6 4.6625 -4.7835 -1.8877 17 6 5.5971 -5.7819 -2.5205 18 1 5.1927 -6.7889 -2.4173 19 6 6.9833 -5.7001 -1.8576 20 6 7.9948 -6.4690 -2.7326 21 16 7.3295 -6.3649 -4.4334 22 8 6.9860 -7.6676 -4.8852 23 8 8.1765 -5.5420 -5.2239 24 6 5.8005 -5.4426 -4.0197 25 7 4.8453 -3.4960 -1.8214 26 8 3.9172 -2.9615 -1.2524 27 1 -0.4849 0.8401 -0.0004 28 1 -0.4653 -1.6444 1.2829 29 1 -1.3681 -3.9884 1.4707 30 1 7.2889 -4.6571 -1.7746 31 1 6.9415 -6.1477 -0.8645 32 1 8.0570 -7.5094 -2.4136 33 1 8.9767 -5.9985 -2.6808 34 1 4.9601 -5.8001 -4.6148 35 1 5.9424 -4.3708 -4.1580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866875571.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:59 Heat of formation + Delta-G solvation = -11.863743 kcal Electronic energy + Delta-G solvation = -24204.831890 eV Core-core repulsion = 20423.528544 eV Total energy + Delta-G solvation = -3781.303345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.038 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.79055 -38.55508 -38.33651 -38.10620 -37.12601 -35.77916 -35.13693 -33.38818 -31.12697 -30.42970 -28.27891 -26.92692 -24.71623 -24.26328 -23.29884 -21.74939 -20.63205 -19.88574 -19.42265 -18.49282 -18.00283 -17.70136 -17.53046 -17.17506 -16.89973 -16.62422 -15.63116 -15.54342 -15.25656 -15.06842 -14.42415 -14.26486 -14.01673 -13.75329 -13.52437 -13.42726 -13.30170 -13.26782 -13.20361 -13.07814 -12.97798 -12.81198 -12.25796 -12.10193 -12.08698 -12.02817 -11.87278 -11.49533 -11.47356 -11.41106 -11.08088 -10.99329 -9.32605 -9.09902 -8.95030 -6.65795 -0.99478 -0.16777 0.94671 1.14060 1.33388 1.36924 1.48064 1.48495 1.64429 1.72804 2.08871 2.10567 2.56090 2.72198 2.82484 3.03067 3.06665 3.23780 3.52906 3.66514 3.75006 3.88291 3.94671 4.32158 4.42479 4.59531 4.70939 4.76808 4.82686 4.90399 5.01064 5.09716 5.17565 5.34281 5.42581 5.53842 5.65634 6.12164 6.33660 6.43471 7.63221 7.83943 Molecular weight = 340.04amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.003174 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.114456 B = 8820.898412 C =10169.815383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.040 3.960 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.250 1.250 6 H -0.252 1.252 7 C -0.379 4.379 8 H 0.093 0.907 9 C 0.109 3.891 10 C -0.128 4.128 11 C -0.183 4.183 12 S 0.034 5.966 13 C -0.385 4.385 14 C 0.308 3.692 15 N -0.579 5.579 16 C 0.192 3.808 17 C 0.003 3.997 18 H 0.133 0.867 19 C -0.107 4.107 20 C -0.556 4.556 21 S 2.419 3.581 22 O -0.964 6.964 23 O -0.971 6.971 24 C -0.587 4.587 25 N -0.444 5.444 26 O 0.024 5.976 27 H 0.312 0.688 28 H 0.152 0.848 29 H 0.183 0.817 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.145 0.855 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 -3.719 0.488 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.173 1.173 6 H -0.175 1.175 7 C -0.409 4.409 8 H 0.111 0.889 9 C 0.096 3.904 10 C -0.160 4.160 11 C -0.318 4.318 12 S 0.289 5.711 13 C -0.505 4.505 14 C 0.108 3.892 15 N -0.318 5.318 16 C -0.084 4.084 17 C -0.018 4.018 18 H 0.151 0.849 19 C -0.147 4.147 20 C -0.688 4.688 21 S 2.604 3.396 22 O -0.961 6.961 23 O -0.968 6.968 24 C -0.716 4.716 25 N -0.171 5.171 26 O -0.022 6.022 27 H 0.124 0.876 28 H 0.170 0.830 29 H 0.200 0.800 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.188 0.812 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.567 -5.505 -0.967 9.407 hybrid contribution -0.593 2.628 0.821 2.817 sum 6.974 -2.876 -0.145 7.545 Atomic orbital electron populations 1.69644 1.08973 1.33267 1.26330 1.27077 0.95845 1.04942 0.90687 0.85076 0.79086 0.74333 0.80634 1.18874 1.17301 1.17523 1.20126 0.97040 0.90780 1.32966 0.88904 1.18488 0.91783 0.91394 0.88702 1.21535 0.95953 0.97499 1.01062 1.25628 1.04170 0.96368 1.05611 1.83096 1.14061 1.09870 1.64038 1.19639 1.02130 0.98239 1.30538 1.23598 0.91527 0.81888 0.92178 1.72280 1.11240 1.23744 1.24522 1.25339 0.93569 0.91125 0.98329 1.20277 0.93777 0.97266 0.90454 0.84911 1.21985 0.88742 1.02764 1.01185 1.30333 1.09605 1.11920 1.16956 1.08153 0.77271 0.74644 0.79496 1.93581 1.83711 1.37947 1.80869 1.93569 1.64824 1.70002 1.68391 1.30844 1.22441 1.15493 1.02803 1.74259 1.11014 1.10485 1.21309 1.85419 1.24098 1.35967 1.56724 0.87598 0.83023 0.79955 0.89477 0.87161 0.81170 0.81343 0.83649 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -30.99 10.78 21.87 0.24 -30.75 16 2 C 0.04 1.62 5.39 85.32 0.46 2.08 16 3 Si 0.99 31.47 29.57 68.60 2.03 33.50 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 5 H -0.25 -7.08 7.11 99.48 0.71 -6.37 16 6 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 7 C -0.38 -17.79 8.64 23.26 0.20 -17.59 16 8 H 0.09 4.46 6.14 -2.91 -0.02 4.44 16 9 C 0.11 5.24 5.69 -20.87 -0.12 5.12 16 10 C -0.13 -5.51 9.04 22.66 0.20 -5.30 16 11 C -0.18 -6.98 11.05 66.67 0.74 -6.24 16 12 S 0.03 1.45 23.16 -56.49 -1.31 0.14 16 13 C -0.38 -18.85 6.34 23.51 0.15 -18.70 16 14 C 0.31 15.15 7.88 85.52 0.67 15.82 16 15 N -0.58 -26.38 11.57 -305.70 -3.54 -29.92 16 16 C 0.19 7.47 6.76 138.57 0.94 8.41 16 17 C 0.00 0.09 3.10 -10.55 -0.03 0.06 16 18 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 19 C -0.11 -2.04 5.75 31.32 0.18 -1.86 16 20 C -0.56 -6.73 7.27 72.41 0.53 -6.20 16 21 S 2.42 47.03 6.10 -56.49 -0.34 46.68 16 22 O -0.96 -24.43 18.14 -127.47 -2.31 -26.74 16 23 O -0.97 -25.64 18.15 -127.47 -2.31 -27.95 16 24 C -0.59 -13.59 6.66 72.68 0.48 -13.11 16 25 N -0.44 -19.12 12.00 -57.46 -0.69 -19.81 16 26 O 0.02 1.14 9.18 66.12 0.61 1.75 16 27 H 0.31 10.97 8.29 -92.71 -0.77 10.20 16 28 H 0.15 6.30 6.35 -2.91 -0.02 6.28 16 29 H 0.18 5.38 8.06 -2.91 -0.02 5.36 16 30 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 31 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.17 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.15 3.17 8.14 -2.38 -0.02 3.15 16 35 H 0.14 3.39 8.05 -2.39 -0.02 3.37 16 Total: -1.00 -68.18 329.17 -2.08 -70.26 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.16 Total: 20.35 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.40 Total: -37.51 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -3.99 Total: -80.47 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -4.02 Total: -52.95 kcal Atomic # 14 Polarization: 31.47 SS G_CDS: 2.03 Total: 33.50 kcal Atomic # 16 Polarization: 48.48 SS G_CDS: -1.65 Total: 46.83 kcal Total: -68.18 -2.08 -70.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866875571.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.399 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds