Wall clock time and date at job start Sat Apr 11 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.75232 * 2 1 4 4 C 1.53810 * 109.69809 * 120.66538 * 2 1 3 5 5 N 1.46966 * 108.58215 * 169.28907 * 4 2 1 6 6 S 1.65606 * 120.59150 * 124.62742 * 5 4 2 7 7 O 1.42094 * 104.27814 * 26.09217 * 6 5 4 8 8 O 1.42101 * 104.27610 * 153.95083 * 6 5 4 9 9 C 1.81400 * 104.44642 * 270.02255 * 6 5 4 10 10 Br 1.96594 * 109.47113 * 180.02562 * 9 6 5 11 11 C 1.46960 * 118.81183 * 304.64483 * 5 4 2 12 12 C 1.53370 * 108.63294 * 55.22846 * 11 5 4 13 13 H 1.08999 * 109.61118 * 190.82559 * 12 11 5 14 14 C 1.53002 * 109.75258 * 70.40355 * 12 11 5 15 15 N 1.46964 * 109.61193 * 239.57208 * 2 1 3 16 16 C 1.36941 * 120.59378 * 5.05309 * 15 2 1 17 17 H 1.07999 * 119.99856 * 328.71907 * 16 15 2 18 18 C 1.38807 * 119.99968 * 148.71697 * 16 15 2 19 19 N 1.31617 * 120.00115 * 343.53815 * 18 16 15 20 20 Si 1.86797 * 119.99803 * 163.54380 * 18 16 15 21 21 H 1.48498 * 109.47155 * 269.99789 * 20 18 16 22 22 H 1.48499 * 109.47471 * 30.00042 * 20 18 16 23 23 H 1.48505 * 109.47203 * 149.99777 * 20 18 16 24 24 H 1.08999 * 109.47177 * 182.52695 * 1 2 3 25 25 H 1.09000 * 109.47245 * 302.53052 * 1 2 3 26 26 H 1.08998 * 109.47180 * 62.53239 * 1 2 3 27 27 H 1.09008 * 109.74054 * 49.49686 * 4 2 1 28 28 H 1.09008 * 109.67467 * 289.04167 * 4 2 1 29 29 H 1.09005 * 109.47060 * 300.00400 * 9 6 5 30 30 H 1.08998 * 109.47598 * 59.99779 * 9 6 5 31 31 H 1.08994 * 109.61109 * 295.48396 * 11 5 4 32 32 H 1.08999 * 109.60434 * 174.97023 * 11 5 4 33 33 H 1.09007 * 109.46932 * 300.76435 * 14 12 11 34 34 H 1.08993 * 109.47520 * 60.76649 * 14 12 11 35 35 H 1.08998 * 109.47228 * 180.77225 * 14 12 11 36 36 H 0.96998 * 119.99979 * 175.05109 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0484 -0.7386 1.2456 5 7 3.4949 -0.9508 1.0960 6 16 4.5497 -0.4147 2.2546 7 8 3.7767 -0.3871 3.4465 8 8 5.6738 -1.2750 2.1302 9 6 4.9764 1.2697 1.7336 10 35 6.2379 2.0542 3.0212 11 6 3.9886 -1.6470 -0.1004 12 6 3.4698 -0.9134 -1.3433 13 1 3.6612 -1.5167 -2.2307 14 6 4.1757 0.4373 -1.4788 15 7 2.0232 -0.7011 -1.1937 16 6 1.1511 -1.1437 -2.1522 17 1 0.1542 -1.4523 -1.8741 18 6 1.5483 -1.1956 -3.4812 19 7 2.6154 -0.5337 -3.8755 20 14 0.5682 -2.2047 -4.7102 21 1 1.1049 -3.5886 -4.7543 22 1 -0.8577 -2.2397 -4.2968 23 1 0.6781 -1.5880 -6.0567 24 1 -0.3633 -1.0266 0.0453 25 1 -0.3634 0.5526 0.8664 26 1 -0.3633 0.4740 -0.9118 27 1 1.5451 -1.7010 1.3391 28 1 1.8568 -0.1378 2.1348 29 1 5.4375 1.2388 0.7464 30 1 4.0726 1.8776 1.6935 31 1 3.6235 -2.6740 -0.1028 32 1 5.0786 -1.6436 -0.1019 33 1 3.9878 1.0364 -0.5878 34 1 5.2481 0.2773 -1.5896 35 1 3.7938 0.9605 -2.3555 36 1 2.9346 -0.6267 -4.7867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867592685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:10 Heat of formation + Delta-G solvation = -34.980117 kcal Electronic energy + Delta-G solvation = -21617.813375 eV Core-core repulsion = 18311.727317 eV Total energy + Delta-G solvation = -3306.086058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.024 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.38860 -37.17129 -35.95290 -34.12239 -32.82200 -32.14687 -31.15217 -28.04340 -27.46115 -26.47129 -24.92797 -23.37474 -21.09758 -19.41661 -18.57910 -17.72274 -16.57406 -16.23938 -15.75561 -15.25290 -14.57303 -14.20300 -14.03401 -13.83181 -13.53909 -13.40288 -13.06088 -12.35517 -12.19531 -12.09423 -11.99270 -11.79621 -11.73826 -11.57894 -11.09392 -11.08192 -10.91971 -10.70789 -10.66072 -10.36744 -10.34152 -10.22282 -10.14522 -9.86929 -9.55301 -8.72015 -8.52560 -6.74411 -5.87411 -3.37537 0.08502 0.91628 2.75593 3.31819 3.39931 3.40696 3.77725 3.99168 4.39715 4.63631 4.93679 5.02028 5.20328 5.31148 5.57890 5.72474 5.86818 6.02187 6.10242 6.16164 6.25551 6.31240 6.36127 6.47442 6.60697 6.68966 6.79306 6.93049 7.00203 7.42325 7.53906 7.74998 8.33595 9.09724 9.70855 10.28406 11.17026 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.004109 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.220327 B = 6811.879618 C = 7104.520622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 H 0.030 0.970 4 C 0.105 3.895 5 N -0.977 5.977 6 S 2.615 3.385 7 O -0.940 6.940 8 O -0.937 6.937 9 C -0.625 4.625 10 Br -0.088 7.088 11 C 0.099 3.901 12 C 0.177 3.823 13 H 0.105 0.895 14 C -0.155 4.155 15 N -0.577 5.577 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.007 3.993 19 N -0.896 5.896 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.293 1.293 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.021 0.979 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 4.553 10.966 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.047 0.953 4 C -0.022 4.022 5 N -0.817 5.817 6 S 2.701 3.299 7 O -0.931 6.931 8 O -0.927 6.927 9 C -0.827 4.827 10 Br -0.008 7.008 11 C -0.027 4.027 12 C 0.069 3.931 13 H 0.123 0.877 14 C -0.214 4.214 15 N -0.299 5.299 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.192 4.192 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.219 1.219 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.184 0.816 30 H 0.180 0.820 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.680 4.455 11.951 13.962 hybrid contribution -0.674 0.117 -1.622 1.761 sum 5.005 4.573 10.329 12.355 Atomic orbital electron populations 1.21771 0.95116 1.01669 1.00950 1.20915 0.93481 0.93686 0.87521 0.95262 1.22288 0.78631 1.01915 0.99358 1.57498 1.17052 1.69385 1.37771 1.05178 0.74444 0.75741 0.74585 1.93593 1.69311 1.86144 1.44008 1.93602 1.52983 1.59863 1.86276 1.34522 1.08346 1.29290 1.10533 1.97422 1.60640 1.85945 1.56825 1.22401 0.98115 0.96915 0.85316 1.20707 0.83475 0.94543 0.94411 0.87701 1.22246 0.97818 0.99873 1.01490 1.44047 1.01613 1.64538 1.19740 1.19182 0.96850 1.36289 0.85770 0.91130 1.25062 0.98458 0.98951 0.96745 1.70017 1.26083 1.40499 1.17412 0.86358 0.79874 0.80064 0.80853 1.21491 1.20486 1.21898 0.92496 0.93976 0.91398 0.90678 0.90328 0.81629 0.82046 0.90948 0.90287 0.95955 0.95021 0.89611 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.97 37.15 0.30 -1.96 16 2 C 0.15 2.73 3.25 -67.26 -0.22 2.51 16 3 H 0.03 0.53 7.39 -51.93 -0.38 0.15 16 4 C 0.11 1.67 5.82 -3.37 -0.02 1.65 16 5 N -0.98 -15.66 2.86 -113.00 -0.32 -15.99 16 6 S 2.61 39.77 5.47 -107.50 -0.59 39.18 16 7 O -0.94 -15.84 16.70 -57.54 -0.96 -16.80 16 8 O -0.94 -16.23 16.70 -57.54 -0.96 -17.19 16 9 C -0.62 -7.75 6.59 101.05 0.67 -7.08 16 10 Br -0.09 -1.10 33.94 -68.01 -2.31 -3.41 16 11 C 0.10 1.70 5.87 -3.60 -0.02 1.68 16 12 C 0.18 3.57 2.33 -67.48 -0.16 3.41 16 13 H 0.11 2.43 6.18 -51.93 -0.32 2.11 16 14 C -0.16 -2.91 8.57 37.16 0.32 -2.59 16 15 N -0.58 -12.33 2.67 -156.77 -0.42 -12.75 16 16 C -0.25 -6.04 8.47 -15.06 -0.13 -6.17 16 17 H 0.07 1.68 6.34 -52.49 -0.33 1.35 16 18 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 19 N -0.90 -23.11 10.15 55.49 0.56 -22.55 16 20 Si 0.90 20.15 29.59 -169.99 -5.03 15.12 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H 0.06 0.95 7.49 -51.93 -0.39 0.56 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.24 7.57 -51.93 -0.39 0.84 16 27 H 0.07 1.20 8.12 -51.92 -0.42 0.78 16 28 H 0.08 1.09 7.06 -51.92 -0.37 0.73 16 29 H 0.17 1.92 6.77 -51.92 -0.35 1.57 16 30 H 0.16 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.25 7.03 -51.93 -0.37 0.88 16 33 H 0.02 0.36 4.91 -51.93 -0.25 0.10 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.90 7.05 -51.93 -0.37 1.53 16 36 H 0.25 6.46 8.32 -40.82 -0.34 6.12 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -27.90 309.95 -9.47 -37.37 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.77 Total: 0.80 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 0.65 Total: -8.47 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.18 Total: -51.29 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.92 Total: -33.99 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Atomic # 16 Polarization: 39.77 SS G_CDS: -0.59 Total: 39.18 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -2.31 Total: -3.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.90 -9.47 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867592685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.392 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds