Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99719 * 2 1 4 4 H 1.48498 * 109.47349 * 269.99657 * 3 2 1 5 5 H 1.48492 * 109.47256 * 30.00189 * 3 2 1 6 6 H 1.48506 * 109.46806 * 150.00103 * 3 2 1 7 7 C 1.37878 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99981 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.53495 * 114.20476 * 180.02562 * 9 7 2 11 11 N 1.47073 * 87.98364 * 220.14253 * 10 9 7 12 12 C 1.34777 * 136.05703 * 207.08350 * 11 10 9 13 13 O 1.21279 * 119.99912 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99631 * 180.02562 * 12 11 10 15 15 N 1.46501 * 109.46585 * 180.02562 * 14 12 11 16 16 C 1.35797 * 119.60767 * 89.99878 * 15 14 12 17 17 C 1.35291 * 120.70937 * 179.73951 * 16 15 14 18 18 C 1.40327 * 119.92314 * 0.25920 * 17 16 15 19 19 Br 1.89099 * 120.38556 * 179.97438 * 18 17 16 20 20 C 1.36564 * 119.23418 * 359.97438 * 18 17 16 21 21 C 1.34651 * 119.60691 * 270.25698 * 15 14 12 22 22 O 1.22070 * 119.97400 * 359.97420 * 21 15 14 23 23 C 1.47070 * 87.88401 * 27.34104 * 11 10 9 24 24 H 0.97004 * 120.00342 * 359.97438 * 1 2 3 25 25 H 1.09004 * 113.27715 * 313.05938 * 9 7 2 26 26 H 1.08996 * 113.47322 * 105.36656 * 10 9 7 27 27 H 1.08999 * 113.52099 * 334.92585 * 10 9 7 28 28 H 1.08987 * 109.47213 * 59.99997 * 14 12 11 29 29 H 1.09001 * 109.46993 * 299.99633 * 14 12 11 30 30 H 1.08002 * 119.64884 * 0.02562 * 16 15 14 31 31 H 1.08002 * 120.04048 * 180.27665 * 17 16 15 32 32 H 1.08004 * 120.34919 * 179.97438 * 20 18 17 33 33 H 1.08991 * 113.46769 * 87.43513 * 23 11 10 34 34 H 1.08998 * 113.46763 * 217.87957 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1409 -2.5939 -0.0013 11 7 5.1441 -2.0871 0.9473 12 6 6.4182 -2.3896 1.2660 13 8 6.9892 -3.2922 0.6914 14 6 7.1330 -1.6069 2.3373 15 7 8.4943 -2.1250 2.4944 16 6 9.5023 -1.5988 1.7519 17 6 10.7686 -2.0568 1.8828 18 6 11.0490 -3.0901 2.7898 19 35 12.8141 -3.7407 2.9826 20 6 10.0325 -3.6206 3.5316 21 6 8.7303 -3.1209 3.3694 22 8 7.8124 -3.5859 4.0261 23 6 4.1430 -1.1092 1.3994 24 1 -0.4851 0.8401 0.0004 25 1 3.9425 -0.5098 -0.7309 26 1 4.5610 -2.8802 -0.9654 27 1 3.4935 -3.3623 0.4212 28 1 6.5950 -1.7063 3.2800 29 1 7.1754 -0.5557 2.0522 30 1 9.2916 -0.8030 1.0528 31 1 11.5627 -1.6273 1.2900 32 1 10.2280 -4.4168 4.2347 33 1 3.4954 -1.4855 2.1912 34 1 4.5647 -0.1305 1.6284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869246461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = 15.917968 kcal Electronic energy + Delta-G solvation = -20831.984564 eV Core-core repulsion = 17392.661661 eV Total energy + Delta-G solvation = -3439.322903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72129 -39.68615 -37.50736 -37.17471 -35.05285 -32.76554 -31.44934 -30.19257 -30.16992 -27.99278 -25.33628 -25.17081 -24.19795 -22.74162 -20.49470 -18.76821 -17.90282 -17.75313 -17.35689 -17.00310 -16.49085 -15.73218 -15.27309 -15.15935 -14.58387 -14.44803 -14.31193 -13.72544 -13.07123 -12.81180 -12.67035 -12.60910 -12.58662 -12.24297 -11.95212 -11.70870 -11.70491 -10.96627 -10.83551 -10.78003 -10.23356 -10.21691 -10.13057 -9.85888 -9.50647 -9.29144 -8.76129 -8.31684 -8.23871 -6.29212 -4.32893 0.31350 1.07102 1.48723 2.20192 2.71158 3.11405 3.12538 3.19406 3.22968 3.42639 4.18633 4.21400 4.36156 4.54007 4.71348 4.73920 4.88681 4.92977 5.11987 5.26341 5.56205 5.60152 5.67983 5.79859 5.91677 6.02986 6.09588 6.17503 6.26588 6.38220 6.73942 7.01213 7.43931 7.73788 8.09777 8.25348 8.33463 8.74822 9.30682 10.82721 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.002351 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.339364 B =11907.639808 C =12126.395497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.116 3.884 11 N -0.640 5.640 12 C 0.521 3.479 13 O -0.548 6.548 14 C 0.074 3.926 15 N -0.476 5.476 16 C 0.164 3.836 17 C -0.225 4.225 18 C 0.015 3.985 19 Br -0.035 7.035 20 C -0.205 4.205 21 C 0.526 3.474 22 O -0.534 6.534 23 C 0.080 3.920 24 H 0.268 0.732 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.414 -0.120 5.644 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.553 4.553 8 H 0.099 0.901 9 C -0.023 4.023 10 C -0.005 4.005 11 N -0.375 5.375 12 C 0.308 3.692 13 O -0.427 6.427 14 C -0.051 4.051 15 N -0.186 5.186 16 C 0.035 3.965 17 C -0.249 4.249 18 C -0.069 4.069 19 Br 0.052 6.948 20 C -0.229 4.229 21 C 0.326 3.674 22 O -0.415 6.415 23 C -0.042 4.042 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.188 0.812 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.108 0.892 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.778 -1.069 5.911 26.468 hybrid contribution 0.004 1.076 -0.042 1.076 sum 25.782 0.006 5.869 26.441 Atomic orbital electron populations 1.69886 1.06400 1.27431 1.48821 1.25030 0.94698 0.99215 0.93785 0.86864 0.80364 0.83534 0.78762 1.20128 1.21184 1.18635 1.20751 0.87322 0.94994 1.52218 0.90139 1.20784 0.97066 0.92668 0.91818 1.23169 0.86133 0.99626 0.91589 1.49938 1.09464 1.37646 1.40417 1.19980 0.81498 0.84158 0.83525 1.90712 1.66372 1.31552 1.54033 1.21820 0.81856 0.99145 1.02257 1.45167 1.08597 1.31286 1.33543 1.21950 0.86974 0.95768 0.91769 1.20451 0.96741 1.02272 1.05451 1.22185 0.91733 0.96208 0.96769 1.96785 1.14226 1.86769 1.97066 1.22187 0.90605 1.05161 1.04959 1.16833 0.90366 0.79752 0.80491 1.91006 1.45636 1.57967 1.46912 1.24125 0.87051 0.90443 1.02605 0.92248 0.92031 0.91849 0.89892 0.85128 0.85998 0.81223 0.82747 0.82371 0.89231 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.96 55.43 0.77 -24.10 16 2 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 18.78 27.15 -169.99 -4.62 14.17 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.04 5.72 56.52 0.32 -4.72 16 7 C -0.52 -12.76 9.38 -34.44 -0.32 -13.08 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.00 -0.08 2.96 -91.12 -0.27 -0.35 16 10 C 0.12 2.21 8.17 -8.50 -0.07 2.14 16 11 N -0.64 -11.45 3.69 -185.04 -0.68 -12.13 16 12 C 0.52 9.03 8.14 -10.98 -0.09 8.94 16 13 O -0.55 -11.36 17.21 5.56 0.10 -11.27 16 14 C 0.07 0.95 5.64 -5.19 -0.03 0.92 16 15 N -0.48 -6.07 2.07 -121.11 -0.25 -6.32 16 16 C 0.16 1.52 10.28 -16.85 -0.17 1.35 16 17 C -0.22 -1.96 9.79 -39.85 -0.39 -2.35 16 18 C 0.01 0.15 6.24 -39.40 -0.25 -0.09 16 19 Br -0.03 -0.30 33.73 -68.01 -2.29 -2.59 16 20 C -0.20 -2.52 9.73 -39.36 -0.38 -2.91 16 21 C 0.53 7.93 7.40 -15.49 -0.11 7.82 16 22 O -0.53 -10.02 16.64 4.85 0.08 -9.94 16 23 C 0.08 1.42 7.44 -8.36 -0.06 1.36 16 24 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 25 H 0.06 1.23 7.03 -51.93 -0.37 0.87 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 28 H 0.13 1.70 7.39 -51.94 -0.38 1.31 16 29 H 0.12 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.17 0.98 8.04 -52.49 -0.42 0.55 16 31 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 34 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -32.38 319.49 -8.03 -40.41 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.70 Total: 1.34 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.25 Total: 5.62 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.16 Total: -42.55 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.62 Total: 14.17 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.38 -8.03 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869246461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.330 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds