Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99719 * 2 1 4 4 H 1.48498 * 109.47349 * 269.99657 * 3 2 1 5 5 H 1.48492 * 109.47256 * 30.00189 * 3 2 1 6 6 H 1.48506 * 109.46806 * 150.00103 * 3 2 1 7 7 C 1.37878 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99981 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.53495 * 114.20476 * 180.02562 * 9 7 2 11 11 N 1.47073 * 87.98364 * 220.14253 * 10 9 7 12 12 C 1.34777 * 136.05703 * 207.08350 * 11 10 9 13 13 O 1.21279 * 119.99912 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99631 * 180.02562 * 12 11 10 15 15 N 1.46501 * 109.46585 * 180.02562 * 14 12 11 16 16 C 1.35797 * 119.60767 * 89.99878 * 15 14 12 17 17 C 1.35291 * 120.70937 * 179.73951 * 16 15 14 18 18 C 1.40327 * 119.92314 * 0.25920 * 17 16 15 19 19 Br 1.89099 * 120.38556 * 179.97438 * 18 17 16 20 20 C 1.36564 * 119.23418 * 359.97438 * 18 17 16 21 21 C 1.34651 * 119.60691 * 270.25698 * 15 14 12 22 22 O 1.22070 * 119.97400 * 359.97420 * 21 15 14 23 23 C 1.47070 * 87.88401 * 27.34104 * 11 10 9 24 24 H 0.97004 * 120.00342 * 359.97438 * 1 2 3 25 25 H 1.09004 * 113.27715 * 313.05938 * 9 7 2 26 26 H 1.08996 * 113.47322 * 105.36656 * 10 9 7 27 27 H 1.08999 * 113.52099 * 334.92585 * 10 9 7 28 28 H 1.08987 * 109.47213 * 59.99997 * 14 12 11 29 29 H 1.09001 * 109.46993 * 299.99633 * 14 12 11 30 30 H 1.08002 * 119.64884 * 0.02562 * 16 15 14 31 31 H 1.08002 * 120.04048 * 180.27665 * 17 16 15 32 32 H 1.08004 * 120.34919 * 179.97438 * 20 18 17 33 33 H 1.08991 * 113.46769 * 87.43513 * 23 11 10 34 34 H 1.08998 * 113.46763 * 217.87957 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.1409 -2.5939 -0.0013 11 7 5.1441 -2.0871 0.9473 12 6 6.4182 -2.3896 1.2660 13 8 6.9892 -3.2922 0.6914 14 6 7.1330 -1.6069 2.3373 15 7 8.4943 -2.1250 2.4944 16 6 9.5023 -1.5988 1.7519 17 6 10.7686 -2.0568 1.8828 18 6 11.0490 -3.0901 2.7898 19 35 12.8141 -3.7407 2.9826 20 6 10.0325 -3.6206 3.5316 21 6 8.7303 -3.1209 3.3694 22 8 7.8124 -3.5859 4.0261 23 6 4.1430 -1.1092 1.3994 24 1 -0.4851 0.8401 0.0004 25 1 3.9425 -0.5098 -0.7309 26 1 4.5610 -2.8802 -0.9654 27 1 3.4935 -3.3623 0.4212 28 1 6.5950 -1.7063 3.2800 29 1 7.1754 -0.5557 2.0522 30 1 9.2916 -0.8030 1.0528 31 1 11.5627 -1.6273 1.2900 32 1 10.2280 -4.4168 4.2347 33 1 3.4954 -1.4855 2.1912 34 1 4.5647 -0.1305 1.6284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869246461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = -5.546108 kcal Electronic energy + Delta-G solvation = -20832.915316 eV Core-core repulsion = 17392.661661 eV Total energy + Delta-G solvation = -3440.253655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.69491 -41.10382 -38.94707 -38.20548 -35.99516 -34.66542 -32.39617 -31.53028 -31.05479 -29.23363 -26.80920 -26.77865 -25.03909 -23.74451 -22.02451 -20.14649 -19.17736 -18.78225 -18.71271 -18.35867 -17.41651 -16.94430 -16.76965 -16.21055 -15.98759 -15.55839 -15.30892 -15.23780 -14.76556 -14.11143 -13.75781 -13.55184 -13.50925 -13.46883 -13.36939 -13.04585 -12.70360 -12.57163 -12.50298 -11.78687 -11.64874 -11.53622 -11.27281 -11.22749 -11.05193 -10.66727 -10.54151 -9.73540 -9.20481 -8.24595 -6.34241 -0.53395 0.28350 0.64894 1.22441 1.40755 1.47184 1.48812 1.60022 1.93274 2.40203 2.43210 3.06497 3.29645 3.50409 3.55584 3.87058 3.97719 4.00696 4.07998 4.19516 4.27509 4.40912 4.45342 4.59002 4.70243 4.78746 4.81618 4.87923 4.92767 5.29112 5.38561 5.61229 5.83264 6.29675 6.70357 6.72740 6.76173 6.93456 7.33688 8.91071 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.002351 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.339364 B =11907.639808 C =12126.395497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.216 1.216 7 C -0.518 4.518 8 H 0.033 0.967 9 C -0.008 4.008 10 C 0.113 3.887 11 N -0.639 5.639 12 C 0.519 3.481 13 O -0.586 6.586 14 C 0.080 3.920 15 N -0.478 5.478 16 C 0.162 3.838 17 C -0.219 4.219 18 C 0.026 3.974 19 Br -0.016 7.016 20 C -0.237 4.237 21 C 0.510 3.490 22 O -0.592 6.592 23 C 0.094 3.906 24 H 0.267 0.733 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.177 0.823 30 H 0.216 0.784 31 H 0.190 0.810 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.055 2.677 5.282 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.138 1.138 7 C -0.556 4.556 8 H 0.052 0.948 9 C -0.028 4.028 10 C -0.010 4.010 11 N -0.373 5.373 12 C 0.308 3.692 13 O -0.468 6.468 14 C -0.044 4.044 15 N -0.187 5.187 16 C 0.035 3.965 17 C -0.242 4.242 18 C -0.059 4.059 19 Br 0.070 6.930 20 C -0.261 4.261 21 C 0.313 3.687 22 O -0.478 6.478 23 C -0.028 4.028 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.194 0.806 30 H 0.232 0.768 31 H 0.207 0.793 32 H 0.173 0.827 33 H 0.100 0.900 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 29.486 1.728 5.543 30.052 hybrid contribution -1.057 0.077 -0.022 1.060 sum 28.429 1.805 5.521 29.016 Atomic orbital electron populations 1.70064 1.08791 1.28470 1.51303 1.26018 0.95410 1.03683 0.93305 0.85767 0.80634 0.77508 0.79161 1.19925 1.21949 1.13784 1.20934 0.89975 0.93284 1.51406 0.94819 1.20709 0.94002 0.93822 0.94252 1.23034 0.86744 0.98899 0.92322 1.49881 1.09697 1.37587 1.40099 1.20795 0.80883 0.83831 0.83648 1.90696 1.67086 1.33324 1.55662 1.21937 0.81435 1.00872 1.00168 1.45221 1.09391 1.30753 1.33312 1.22774 0.86225 0.96185 0.91307 1.20960 0.97661 1.01070 1.04543 1.22440 0.92063 0.95655 0.95695 1.96815 1.12421 1.86749 1.97012 1.22067 0.90425 1.06644 1.06959 1.17224 0.90681 0.80123 0.80661 1.90959 1.47167 1.60217 1.49496 1.23874 0.86702 0.92113 1.00157 0.92384 0.90492 0.91487 0.91271 0.85439 0.80590 0.76753 0.79327 0.82676 0.90012 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.80 13.96 21.45 0.30 -54.50 16 2 C 0.01 0.72 5.47 84.66 0.46 1.19 16 3 Si 0.95 37.05 27.15 68.60 1.86 38.91 16 4 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.29 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.22 -6.76 5.72 99.48 0.57 -6.19 16 7 C -0.52 -26.14 9.38 25.60 0.24 -25.90 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C -0.01 -0.32 2.96 -11.12 -0.03 -0.36 16 10 C 0.11 4.23 8.17 83.18 0.68 4.91 16 11 N -0.64 -21.38 3.69 -857.73 -3.16 -24.54 16 12 C 0.52 16.72 8.14 87.66 0.71 17.44 16 13 O -0.59 -23.56 17.21 -3.03 -0.05 -23.61 16 14 C 0.08 1.76 5.64 85.63 0.48 2.25 16 15 N -0.48 -10.87 2.07 -655.21 -1.36 -12.23 16 16 C 0.16 2.27 10.28 83.40 0.86 3.13 16 17 C -0.22 -2.90 9.79 22.10 0.22 -2.69 16 18 C 0.03 0.47 6.24 22.39 0.14 0.61 16 19 Br -0.02 -0.25 33.73 -20.37 -0.69 -0.93 16 20 C -0.24 -5.75 9.73 22.41 0.22 -5.53 16 21 C 0.51 15.21 7.40 84.79 0.63 15.83 16 22 O -0.59 -22.91 16.64 -5.54 -0.09 -23.00 16 23 C 0.09 3.02 7.44 83.27 0.62 3.64 16 24 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.08 2.81 7.03 -2.38 -0.02 2.79 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 2.75 8.10 -2.39 -0.02 2.73 16 28 H 0.13 3.00 7.39 -2.39 -0.02 2.98 16 29 H 0.18 1.92 8.01 -2.39 -0.02 1.90 16 30 H 0.22 0.99 8.04 -2.91 -0.02 0.97 16 31 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.08 2.79 8.10 -2.39 -0.02 2.78 16 34 H 0.10 2.50 7.15 -2.39 -0.02 2.48 16 Total: -1.00 -76.11 319.49 3.02 -73.09 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.99 Total: 12.31 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.22 Total: 14.51 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -4.22 Total: -91.27 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.14 Total: -46.61 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.86 Total: 38.91 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.93 kcal Total: -76.11 3.02 -73.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869246461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.539 kcal (2) G-P(sol) polarization free energy of solvation -76.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds