Wall clock time and date at job start Sat Apr 11 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34953 * 126.02760 * 2 1 4 4 C 1.35306 * 107.76132 * 180.13284 * 3 2 1 5 5 C 1.50702 * 126.04525 * 179.89852 * 4 3 2 6 6 N 1.46497 * 109.47236 * 99.71806 * 5 4 3 7 7 C 1.35313 * 125.86667 * 125.29282 * 6 5 4 8 8 C 1.35349 * 106.17218 * 180.18574 * 7 6 5 9 9 C 1.50697 * 126.75364 * 179.85517 * 8 7 6 10 10 N 1.46499 * 109.47276 * 94.71254 * 9 8 7 11 11 C 1.36935 * 119.99938 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00518 * 359.72965 * 11 10 9 13 13 C 1.38817 * 119.99990 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99892 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99858 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47174 * 89.99644 * 15 13 11 17 17 H 1.48494 * 109.46800 * 209.99692 * 15 13 11 18 18 H 1.48504 * 109.46913 * 329.99394 * 15 13 11 19 19 N 1.33774 * 106.49914 * 359.59715 * 8 7 6 20 20 N 1.28635 * 108.88067 * 0.25663 * 19 8 7 21 21 C 1.39954 * 107.90932 * 359.63777 * 4 3 2 22 22 Br 1.89099 * 125.90718 * 180.18920 * 21 4 3 23 23 N 1.30881 * 108.18340 * 0.22598 * 21 4 3 24 24 H 1.08998 * 109.47613 * 270.24765 * 1 2 3 25 25 H 1.09005 * 109.47313 * 30.24645 * 1 2 3 26 26 H 1.09001 * 109.46792 * 150.24143 * 1 2 3 27 27 H 1.07994 * 126.12111 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.46644 * 339.71560 * 5 4 3 29 29 H 1.09004 * 109.46850 * 219.72083 * 5 4 3 30 30 H 1.08001 * 126.91913 * 0.04070 * 7 6 5 31 31 H 1.09004 * 109.47205 * 334.71228 * 9 8 7 32 32 H 1.09005 * 109.47240 * 214.71438 * 9 8 7 33 33 H 0.96999 * 119.99984 * 0.02562 * 10 9 8 34 34 H 0.97005 * 119.99715 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2587 1.0914 0.0000 4 6 3.5436 0.6673 -0.0030 5 6 4.7676 1.5465 -0.0062 6 7 5.3036 1.6425 1.3538 7 6 6.5717 1.3552 1.7283 8 6 6.6299 1.5758 3.0624 9 6 7.8310 1.3959 3.9546 10 7 8.5268 2.6767 4.1011 11 6 9.6556 2.7585 4.8719 12 1 10.0307 1.8797 5.3753 13 6 10.3152 3.9721 5.0104 14 7 11.3999 4.0507 5.7516 15 14 9.6623 5.4938 4.1458 16 1 8.7037 6.1962 5.0363 17 1 10.7919 6.4012 3.8206 18 1 8.9723 5.0937 2.8931 19 7 5.4131 1.9904 3.4324 20 7 4.6504 2.0191 2.3969 21 6 3.5349 -0.7322 0.0035 22 35 5.0596 -1.8507 0.0079 23 7 2.2889 -1.1329 0.0053 24 1 -0.3634 0.0044 1.0276 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5101 27 1 1.9277 2.1194 -0.0004 28 1 4.4994 2.5412 -0.3622 29 1 5.5222 1.1162 -0.6647 30 1 7.3751 1.0157 1.0913 31 1 8.5065 0.6641 3.5113 32 1 7.5067 1.0443 4.9341 33 1 8.1878 3.4669 3.6522 34 1 11.8605 4.8989 5.8486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881390380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:21 Heat of formation + Delta-G solvation = 178.633275 kcal Electronic energy + Delta-G solvation = -20490.694296 eV Core-core repulsion = 17123.012761 eV Total energy + Delta-G solvation = -3367.681536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.034 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.13758 -42.45122 -37.11794 -36.06872 -34.51713 -33.75553 -32.28352 -31.86980 -31.76057 -28.81290 -27.77062 -26.49233 -24.31926 -23.06190 -22.37834 -22.23855 -21.17651 -19.83354 -18.31381 -17.84031 -17.17993 -16.63187 -16.51252 -15.95188 -15.68922 -15.64459 -15.03013 -14.72527 -14.53933 -14.32656 -14.04608 -13.86974 -13.51866 -13.43330 -13.09103 -12.87673 -12.47800 -12.24607 -12.11710 -12.08801 -11.79811 -11.74166 -11.50971 -10.99733 -10.94135 -10.42375 -10.13575 -9.78084 -9.29030 -7.99911 -5.33155 0.03410 0.55526 0.71945 0.94955 1.37803 1.42983 1.48262 1.55712 1.67881 1.92069 2.50627 3.31008 3.33059 3.37590 3.62366 3.87289 3.92677 4.08041 4.10170 4.28327 4.33045 4.37429 4.46241 4.55451 4.66481 4.72764 4.89136 4.94921 5.19488 5.24118 5.75998 5.78162 5.82311 6.20634 6.23684 7.08515 7.62135 7.83538 8.04361 9.21417 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.003105 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.494417 B = 9016.274161 C = 9893.061500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.358 5.358 3 C 0.117 3.883 4 C -0.260 4.260 5 C 0.187 3.813 6 N -0.276 5.276 7 C -0.016 4.016 8 C -0.045 4.045 9 C 0.240 3.760 10 N -0.751 5.751 11 C -0.231 4.231 12 H 0.065 0.935 13 C -0.060 4.060 14 N -0.981 5.981 15 Si 0.953 3.047 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.256 1.256 19 N -0.303 5.303 20 N -0.099 5.099 21 C 0.072 3.928 22 Br 0.035 6.965 23 N -0.300 5.300 24 H 0.086 0.914 25 H 0.130 0.870 26 H 0.096 0.904 27 H 0.226 0.774 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.223 0.777 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.363 0.637 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.783 -9.893 -23.604 35.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.140 5.140 3 C -0.033 4.033 4 C -0.274 4.274 5 C 0.068 3.932 6 N -0.070 5.070 7 C -0.168 4.168 8 C -0.183 4.183 9 C 0.113 3.887 10 N -0.397 5.397 11 C -0.362 4.362 12 H 0.083 0.917 13 C -0.252 4.252 14 N -0.632 5.632 15 Si 0.781 3.219 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.180 1.180 19 N -0.170 5.170 20 N -0.078 5.078 21 C -0.172 4.172 22 Br 0.116 6.884 23 N -0.125 5.125 24 H 0.105 0.895 25 H 0.148 0.852 26 H 0.114 0.886 27 H 0.243 0.757 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.239 0.761 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.196 0.804 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.457 -10.938 -22.968 36.703 hybrid contribution 1.137 1.239 -0.324 1.713 sum -25.320 -9.699 -23.292 35.744 Atomic orbital electron populations 1.22428 0.70549 1.06974 1.05137 1.48909 1.08380 1.02786 1.53932 1.23100 0.89130 0.95319 0.95702 1.19767 0.95755 0.91046 1.20842 1.20633 0.94052 1.02364 0.76181 1.47733 1.07708 1.41272 1.10274 1.23784 0.89932 1.06651 0.96391 1.22134 0.94978 1.06908 0.94309 1.18860 0.86895 0.88036 0.94914 1.42664 1.30049 1.07494 1.59497 1.19057 1.00585 0.95897 1.20622 0.91724 1.25417 0.97881 1.00625 1.01245 1.69868 1.21755 1.26115 1.45478 0.85434 0.77238 0.79946 0.79295 1.21294 1.21612 1.18035 1.75028 1.02743 1.17875 1.21320 1.78074 1.21419 1.18984 0.89336 1.24069 0.93231 0.94341 1.05602 1.96819 1.28359 1.65525 1.97666 1.77452 1.00340 1.10233 1.24469 0.89519 0.85192 0.88555 0.75739 0.84245 0.84480 0.76059 0.91846 0.95228 0.80390 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.47 127.77 1.47 1.87 16 2 N -0.36 -5.01 4.01 -369.58 -1.48 -6.49 16 3 C 0.12 1.38 11.40 83.54 0.95 2.33 16 4 C -0.26 -4.18 5.47 -20.12 -0.11 -4.29 16 5 C 0.19 2.55 6.73 85.63 0.58 3.13 16 6 N -0.28 -6.56 3.43 -351.47 -1.21 -7.77 16 7 C -0.02 -0.41 11.50 83.49 0.96 0.55 16 8 C -0.04 -1.60 6.61 41.59 0.28 -1.33 16 9 C 0.24 9.88 6.82 85.63 0.58 10.47 16 10 N -0.75 -37.17 5.40 -347.17 -1.87 -39.04 16 11 C -0.23 -13.53 10.47 84.04 0.88 -12.65 16 12 H 0.06 4.07 8.06 -2.91 -0.02 4.05 16 13 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 14 N -0.98 -63.83 13.97 21.65 0.30 -63.52 16 15 Si 0.95 47.21 27.74 68.60 1.90 49.11 16 16 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 17 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 18 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 19 N -0.30 -11.72 12.41 -48.60 -0.60 -12.32 16 20 N -0.10 -3.13 12.92 37.02 0.48 -2.65 16 21 C 0.07 1.49 7.71 85.25 0.66 2.15 16 22 Br 0.03 0.68 33.89 -20.37 -0.69 -0.01 16 23 N -0.30 -6.47 12.58 -52.94 -0.67 -7.14 16 24 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.13 -0.31 8.14 -2.38 -0.02 -0.33 16 26 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.23 0.72 8.06 -2.91 -0.02 0.70 16 28 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.14 1.25 8.07 -2.39 -0.02 1.23 16 30 H 0.22 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.36 17.70 5.52 -92.71 -0.51 17.19 16 34 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -84.55 325.68 3.44 -81.11 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.57 Total: 9.67 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 6.71 Total: -0.94 kcal Atomic # 7 Polarization: -133.90 SS G_CDS: -5.05 Total: -138.95 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.90 Total: 49.11 kcal Atomic # 35 Polarization: 0.68 SS G_CDS: -0.69 Total: -0.01 kcal Total: -84.55 3.44 -81.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881390380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.744 kcal (2) G-P(sol) polarization free energy of solvation -84.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds