Wall clock time and date at job start Sat Apr 11 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86808 * 120.00032 * 2 1 4 4 H 1.48499 * 109.46675 * 180.27654 * 3 2 1 5 5 H 1.48496 * 109.46758 * 300.27672 * 3 2 1 6 6 H 1.48492 * 109.47279 * 60.27707 * 3 2 1 7 7 C 1.38645 * 119.99956 * 180.27487 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.71997 * 7 2 1 9 9 O 1.34823 * 120.00092 * 359.72259 * 7 2 1 10 10 C 1.35766 * 117.00451 * 174.93425 * 9 7 2 11 11 C 1.38898 * 120.05257 * 5.59809 * 10 9 7 12 12 C 1.38067 * 119.94161 * 179.67730 * 11 10 9 13 13 C 1.38433 * 120.05868 * 0.61888 * 12 11 10 14 14 Cl 1.73599 * 119.94680 * 179.70016 * 13 12 11 15 15 C 1.38387 * 120.10708 * 359.68278 * 13 12 11 16 16 C 1.38115 * 120.06034 * 359.97438 * 15 13 12 17 17 C 1.50695 * 120.03043 * 180.02562 * 16 15 13 18 18 S 1.81402 * 109.47099 * 270.02181 * 17 16 15 19 19 C 1.81395 * 102.99691 * 179.97438 * 18 17 16 20 20 C 1.53010 * 109.47001 * 179.97438 * 19 18 17 21 21 C 1.50691 * 109.47059 * 180.02562 * 20 19 18 22 22 N 1.33319 * 126.55154 * 269.68366 * 21 20 19 23 23 N 1.28994 * 107.35588 * 179.83832 * 22 21 20 24 24 N 1.28784 * 108.72621 * 0.43534 * 23 22 21 25 25 H 0.97003 * 125.45214 * 179.72181 * 24 23 22 26 26 N 1.28883 * 109.10315 * 359.72710 * 24 23 22 27 27 H 0.97001 * 120.00006 * 359.72091 * 1 2 3 28 28 H 1.08000 * 120.02582 * 359.97438 * 11 10 9 29 29 H 1.08006 * 119.97098 * 180.32224 * 12 11 10 30 30 H 1.08007 * 119.97109 * 180.02562 * 15 13 12 31 31 H 1.08999 * 109.47004 * 30.02114 * 17 16 15 32 32 H 1.08997 * 109.47229 * 150.02067 * 17 16 15 33 33 H 1.09001 * 109.47792 * 299.99693 * 19 18 17 34 34 H 1.09000 * 109.47480 * 60.00257 * 19 18 17 35 35 H 1.09001 * 109.46673 * 300.00471 * 20 19 18 36 36 H 1.09000 * 109.46718 * 59.99883 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 -0.0068 5 1 1.8858 2.3993 -1.2091 6 1 1.8960 2.3936 1.2158 7 6 2.0088 -1.2007 -0.0058 8 1 3.0888 -1.2007 -0.0103 9 8 1.3347 -2.3683 -0.0057 10 6 2.0695 -3.5044 -0.1183 11 6 3.4570 -3.4391 -0.1098 12 6 4.2020 -4.5965 -0.2178 13 6 3.5674 -5.8200 -0.3472 14 17 4.5071 -7.2726 -0.4906 15 6 2.1853 -5.8870 -0.3622 16 6 1.4354 -4.7329 -0.2475 17 6 -0.0697 -4.8067 -0.2633 18 16 -0.6643 -4.6618 -1.9710 19 6 -2.4655 -4.7718 -1.7865 20 6 -3.1266 -4.6636 -3.1622 21 6 -4.6229 -4.7543 -3.0089 22 7 -5.3586 -5.8656 -3.0433 23 7 -6.5888 -5.5181 -2.8703 24 7 -6.6425 -4.2380 -2.7400 25 1 -7.4509 -3.7199 -2.6021 26 7 -5.4503 -3.7553 -2.8222 27 1 -0.4850 0.8400 0.0041 28 1 3.9525 -2.4842 -0.0141 29 1 5.2808 -4.5468 -0.2060 30 1 1.6925 -6.8428 -0.4629 31 1 -0.3910 -5.7612 0.1535 32 1 -0.4797 -3.9927 0.3345 33 1 -2.7266 -5.7273 -1.3317 34 1 -2.8159 -3.9589 -1.1505 35 1 -2.8654 -3.7078 -3.6165 36 1 -2.7761 -5.4762 -3.7985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882189213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:24 Heat of formation + Delta-G solvation = 104.791740 kcal Electronic energy + Delta-G solvation = -23139.761335 eV Core-core repulsion = 19393.765596 eV Total energy + Delta-G solvation = -3745.995739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.050 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.62228 -39.36011 -36.88177 -35.61227 -35.25527 -34.09883 -32.53900 -32.11723 -31.46229 -29.01693 -26.67485 -25.50396 -25.07699 -24.62169 -21.98770 -21.76584 -20.87263 -19.29740 -18.17701 -17.32957 -17.08477 -15.93558 -15.51029 -15.19216 -15.14620 -14.76865 -14.57034 -14.10685 -13.87939 -13.79272 -13.13420 -13.08044 -12.75930 -12.55803 -12.45378 -12.33306 -12.04313 -11.86075 -11.48215 -11.42905 -11.21856 -11.19027 -11.10047 -10.99355 -10.52730 -10.49443 -10.46860 -10.31189 -9.68261 -9.48425 -8.93489 -8.29011 -7.30129 -7.12665 -6.59654 -4.16796 0.96925 1.47829 1.92512 2.03057 2.14006 2.40428 2.79035 3.04043 3.05941 3.07385 3.12384 3.81763 3.84766 4.16282 4.34239 4.90177 4.93416 5.02604 5.04246 5.21419 5.24198 5.42752 5.43203 5.58673 5.59882 5.75053 5.80728 5.94000 6.02146 6.10472 6.25198 6.36159 6.56127 6.80042 6.85008 7.05520 7.17897 7.47338 7.82846 8.06834 8.85047 9.48908 10.56464 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.003518 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.849370 B = 7957.960830 C =11416.549380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.154 6.154 10 C 0.170 3.830 11 C -0.224 4.224 12 C -0.053 4.053 13 C -0.127 4.127 14 Cl -0.104 7.104 15 C -0.041 4.041 16 C -0.147 4.147 17 C -0.016 4.016 18 S -0.236 6.236 19 C -0.092 4.092 20 C -0.006 4.006 21 C 0.184 3.816 22 N -0.274 5.274 23 N -0.057 5.057 24 N -0.232 5.232 25 H 0.474 0.526 26 N -0.292 5.292 27 H 0.271 0.729 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -7.028 -3.021 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.055 6.055 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.072 4.072 13 C -0.155 4.155 14 Cl -0.076 7.076 15 C -0.062 4.062 16 C -0.151 4.151 17 C -0.163 4.163 18 S -0.006 6.006 19 C -0.242 4.242 20 C -0.047 4.047 21 C -0.100 4.100 22 N -0.147 5.147 23 N -0.052 5.052 24 N -0.078 5.078 25 H 0.327 0.673 26 N -0.144 5.144 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.566 -7.101 -3.934 10.441 hybrid contribution -0.245 1.191 1.238 1.735 sum -6.811 -5.911 -2.696 9.412 Atomic orbital electron populations 1.70041 1.05954 1.27866 1.44325 1.25293 0.95843 0.98856 0.96095 0.85652 0.79276 0.80214 0.78380 1.18951 1.19957 1.20086 1.21424 0.91942 0.80582 1.52985 0.88784 1.83969 1.34278 1.11342 1.75960 1.19112 0.90083 0.87685 0.91836 1.21090 0.93452 0.98701 1.11162 1.20673 0.99242 0.90458 0.96875 1.20222 0.91184 0.86495 1.17565 1.98281 1.73601 1.38466 1.97260 1.20391 0.91325 0.97332 0.97134 1.18070 0.92530 0.90963 1.13490 1.21895 0.95099 1.04578 0.94723 1.87026 1.01504 1.97346 1.14766 1.23232 0.96471 1.05146 0.99303 1.19659 0.81225 1.06233 0.97600 1.25677 0.99432 0.84289 1.00631 1.75898 0.95581 1.25594 1.17662 1.78936 1.15811 0.95902 1.14589 1.47823 1.08856 1.05545 1.45584 0.67257 1.74827 0.91096 1.27458 1.21016 0.91855 0.84475 0.86290 0.85753 0.90328 0.88552 0.90056 0.89583 0.87561 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.14 13.67 55.48 0.76 -22.38 16 2 C 0.05 1.16 5.49 -17.52 -0.10 1.06 16 3 Si 0.94 19.34 29.55 -169.99 -5.02 14.31 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.15 9.49 30.88 0.29 -9.86 16 8 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 9 O -0.15 -3.98 8.81 0.02 0.00 -3.98 16 10 C 0.17 3.77 6.62 -39.11 -0.26 3.52 16 11 C -0.22 -4.53 9.17 -39.40 -0.36 -4.89 16 12 C -0.05 -0.93 9.82 -39.57 -0.39 -1.32 16 13 C -0.13 -2.20 6.32 -39.45 -0.25 -2.45 16 14 Cl -0.10 -1.57 28.95 -51.86 -1.50 -3.07 16 15 C -0.04 -0.71 9.48 -39.57 -0.38 -1.09 16 16 C -0.15 -2.86 5.16 -104.44 -0.54 -3.40 16 17 C -0.02 -0.28 5.85 36.00 0.21 -0.07 16 18 S -0.24 -4.06 21.72 -107.50 -2.33 -6.40 16 19 C -0.09 -1.27 5.92 37.16 0.22 -1.05 16 20 C -0.01 -0.07 5.85 -27.88 -0.16 -0.24 16 21 C 0.18 2.33 7.62 -156.62 -1.19 1.14 16 22 N -0.27 -3.61 12.50 32.45 0.41 -3.20 16 23 N -0.06 -0.65 13.48 60.35 0.81 0.16 16 24 N -0.23 -2.11 7.91 60.34 0.48 -1.63 16 25 H 0.47 2.00 8.96 -340.52 -3.05 -1.06 16 26 N -0.29 -3.50 12.36 32.46 0.40 -3.10 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.14 2.73 5.64 -52.49 -0.30 2.43 16 29 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 31 H 0.08 1.17 8.09 -51.92 -0.42 0.75 16 32 H 0.10 1.91 7.53 -51.93 -0.39 1.52 16 33 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.09 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -30.02 349.49 -9.74 -39.76 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.10 Total: 2.90 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.90 Total: -18.64 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 2.86 Total: -30.15 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.00 Total: -3.98 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.33 Total: -6.40 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.02 -9.74 -39.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882189213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.551 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds