Wall clock time and date at job start Sat Apr 11 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86808 * 120.00032 * 2 1 4 4 H 1.48499 * 109.46675 * 180.27654 * 3 2 1 5 5 H 1.48496 * 109.46758 * 300.27672 * 3 2 1 6 6 H 1.48492 * 109.47279 * 60.27707 * 3 2 1 7 7 C 1.38645 * 119.99956 * 180.27487 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.71997 * 7 2 1 9 9 O 1.34823 * 120.00092 * 359.72259 * 7 2 1 10 10 C 1.35766 * 117.00451 * 174.93425 * 9 7 2 11 11 C 1.38898 * 120.05257 * 5.59809 * 10 9 7 12 12 C 1.38067 * 119.94161 * 179.67730 * 11 10 9 13 13 C 1.38433 * 120.05868 * 0.61888 * 12 11 10 14 14 Cl 1.73599 * 119.94680 * 179.70016 * 13 12 11 15 15 C 1.38387 * 120.10708 * 359.68278 * 13 12 11 16 16 C 1.38115 * 120.06034 * 359.97438 * 15 13 12 17 17 C 1.50695 * 120.03043 * 180.02562 * 16 15 13 18 18 S 1.81402 * 109.47099 * 270.02181 * 17 16 15 19 19 C 1.81395 * 102.99691 * 179.97438 * 18 17 16 20 20 C 1.53010 * 109.47001 * 179.97438 * 19 18 17 21 21 C 1.50691 * 109.47059 * 180.02562 * 20 19 18 22 22 N 1.33319 * 126.55154 * 269.68366 * 21 20 19 23 23 N 1.28994 * 107.35588 * 179.83832 * 22 21 20 24 24 N 1.28784 * 108.72621 * 0.43534 * 23 22 21 25 25 H 0.97003 * 125.45214 * 179.72181 * 24 23 22 26 26 N 1.28883 * 109.10315 * 359.72710 * 24 23 22 27 27 H 0.97001 * 120.00006 * 359.72091 * 1 2 3 28 28 H 1.08000 * 120.02582 * 359.97438 * 11 10 9 29 29 H 1.08006 * 119.97098 * 180.32224 * 12 11 10 30 30 H 1.08007 * 119.97109 * 180.02562 * 15 13 12 31 31 H 1.08999 * 109.47004 * 30.02114 * 17 16 15 32 32 H 1.08997 * 109.47229 * 150.02067 * 17 16 15 33 33 H 1.09001 * 109.47792 * 299.99693 * 19 18 17 34 34 H 1.09000 * 109.47480 * 60.00257 * 19 18 17 35 35 H 1.09001 * 109.46673 * 300.00471 * 20 19 18 36 36 H 1.09000 * 109.46718 * 59.99883 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 -0.0068 5 1 1.8858 2.3993 -1.2091 6 1 1.8960 2.3936 1.2158 7 6 2.0088 -1.2007 -0.0058 8 1 3.0888 -1.2007 -0.0103 9 8 1.3347 -2.3683 -0.0057 10 6 2.0695 -3.5044 -0.1183 11 6 3.4570 -3.4391 -0.1098 12 6 4.2020 -4.5965 -0.2178 13 6 3.5674 -5.8200 -0.3472 14 17 4.5071 -7.2726 -0.4906 15 6 2.1853 -5.8870 -0.3622 16 6 1.4354 -4.7329 -0.2475 17 6 -0.0697 -4.8067 -0.2633 18 16 -0.6643 -4.6618 -1.9710 19 6 -2.4655 -4.7718 -1.7865 20 6 -3.1266 -4.6636 -3.1622 21 6 -4.6229 -4.7543 -3.0089 22 7 -5.3586 -5.8656 -3.0433 23 7 -6.5888 -5.5181 -2.8703 24 7 -6.6425 -4.2380 -2.7400 25 1 -7.4509 -3.7199 -2.6021 26 7 -5.4503 -3.7553 -2.8222 27 1 -0.4850 0.8400 0.0041 28 1 3.9525 -2.4842 -0.0141 29 1 5.2808 -4.5468 -0.2060 30 1 1.6925 -6.8428 -0.4629 31 1 -0.3910 -5.7612 0.1535 32 1 -0.4797 -3.9927 0.3345 33 1 -2.7266 -5.7273 -1.3317 34 1 -2.8159 -3.9589 -1.1505 35 1 -2.8654 -3.7078 -3.6165 36 1 -2.7761 -5.4762 -3.7985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882189213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:23 Heat of formation + Delta-G solvation = 87.279362 kcal Electronic energy + Delta-G solvation = -23140.520729 eV Core-core repulsion = 19393.765596 eV Total energy + Delta-G solvation = -3746.755133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.050 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.53164 -40.97102 -38.46697 -37.02353 -36.22776 -35.03287 -34.30564 -33.67846 -32.46152 -30.56695 -28.17941 -27.29226 -26.14085 -25.55029 -23.47585 -22.93217 -22.31176 -20.15968 -19.90402 -18.80598 -18.20644 -17.27161 -16.87566 -16.78623 -16.39437 -16.18310 -15.95938 -15.50287 -15.34834 -15.00411 -14.75551 -14.46952 -13.96376 -13.88330 -13.81168 -13.60120 -13.56657 -13.20066 -12.80130 -12.75728 -12.56045 -12.42485 -12.34676 -12.09511 -12.06324 -11.85823 -11.79389 -11.41102 -11.22847 -10.95535 -10.74140 -9.77009 -8.90534 -8.50980 -8.44948 -6.10591 0.03756 0.11317 0.49215 0.82229 1.09665 1.36865 1.39389 1.45188 1.49476 1.55242 1.70051 2.17899 2.75226 2.87964 3.13456 3.22665 3.41190 3.74399 3.85549 3.94360 3.95400 4.18447 4.23211 4.32907 4.48904 4.52658 4.53773 4.56141 4.77796 4.84838 4.90899 5.05678 5.12375 5.34876 5.43472 5.56245 5.61364 5.92133 6.00240 6.99494 7.15059 7.73554 8.75777 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.003518 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.849370 B = 7957.960830 C =11416.549380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.010 4.010 3 Si 1.009 2.991 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.199 6.199 10 C 0.141 3.859 11 C -0.234 4.234 12 C -0.050 4.050 13 C -0.115 4.115 14 Cl -0.074 7.074 15 C -0.039 4.039 16 C -0.148 4.148 17 C -0.011 4.011 18 S -0.267 6.267 19 C -0.073 4.073 20 C 0.000 4.000 21 C 0.178 3.822 22 N -0.294 5.294 23 N -0.059 5.059 24 N -0.205 5.205 25 H 0.492 0.508 26 N -0.306 5.306 27 H 0.272 0.728 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -8.740 -3.386 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.210 4.210 3 Si 0.830 3.170 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.103 6.103 10 C 0.087 3.913 11 C -0.253 4.253 12 C -0.070 4.070 13 C -0.142 4.142 14 Cl -0.046 7.046 15 C -0.060 4.060 16 C -0.151 4.151 17 C -0.159 4.159 18 S -0.037 6.037 19 C -0.223 4.223 20 C -0.041 4.041 21 C -0.107 4.107 22 N -0.167 5.167 23 N -0.054 5.054 24 N -0.056 5.056 25 H 0.351 0.649 26 N -0.158 5.158 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.654 -8.866 -4.294 11.358 hybrid contribution -0.484 1.370 1.326 1.967 sum -6.137 -7.495 -2.968 10.132 Atomic orbital electron populations 1.70173 1.07733 1.28609 1.47545 1.26388 0.96692 1.02225 0.95686 0.84647 0.78519 0.75518 0.78359 1.17475 1.19700 1.19586 1.21837 0.92547 0.81290 1.53242 0.87976 1.83964 1.35278 1.12063 1.79022 1.19653 0.91184 0.87825 0.92684 1.21203 0.92971 0.99713 1.11418 1.20939 1.00603 0.89690 0.95747 1.20457 0.91576 0.87579 1.14618 1.98303 1.72772 1.36485 1.96999 1.20687 0.91538 0.97670 0.96110 1.18389 0.93605 0.90730 1.12364 1.21844 0.94282 1.04981 0.94746 1.87007 1.04830 1.97548 1.14321 1.23173 0.93490 1.05344 1.00289 1.19585 0.81236 1.06657 0.96637 1.25610 0.99481 0.84402 1.01170 1.75883 0.96103 1.26054 1.18642 1.78877 1.15263 0.96597 1.14638 1.47857 1.08975 1.05130 1.43598 0.64914 1.74799 0.91940 1.27724 1.21341 0.91918 0.84867 0.83406 0.82954 0.87143 0.91555 0.88470 0.91074 0.87947 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.99 13.67 21.61 0.30 -51.69 16 2 C -0.01 -0.54 5.49 84.83 0.47 -0.08 16 3 Si 1.01 40.69 29.55 68.60 2.03 42.71 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.41 -22.27 9.49 67.92 0.64 -21.63 16 8 H 0.10 5.06 5.20 -2.91 -0.02 5.05 16 9 O -0.20 -10.82 8.81 -22.84 -0.20 -11.02 16 10 C 0.14 6.39 6.62 22.58 0.15 6.54 16 11 C -0.23 -9.41 9.17 22.39 0.21 -9.20 16 12 C -0.05 -1.67 9.82 22.28 0.22 -1.45 16 13 C -0.12 -3.64 6.32 22.35 0.14 -3.50 16 14 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.04 16 15 C -0.04 -1.28 9.48 22.28 0.21 -1.07 16 16 C -0.15 -5.71 5.16 -19.75 -0.10 -5.81 16 17 C -0.01 -0.41 5.85 71.23 0.42 0.01 16 18 S -0.27 -9.21 21.72 -56.49 -1.23 -10.44 16 19 C -0.07 -2.02 5.92 71.99 0.43 -1.59 16 20 C 0.00 0.00 5.85 29.85 0.17 0.18 16 21 C 0.18 4.36 7.62 138.54 1.06 5.42 16 22 N -0.29 -7.42 12.50 -51.26 -0.64 -8.06 16 23 N -0.06 -1.26 13.48 37.02 0.50 -0.76 16 24 N -0.20 -3.44 7.91 37.00 0.29 -3.15 16 25 H 0.49 3.35 8.96 -347.66 -3.12 0.24 16 26 N -0.31 -7.06 12.36 -51.20 -0.63 -7.69 16 27 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.13 5.38 5.64 -2.91 -0.02 5.36 16 29 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.11 3.15 8.09 -2.39 -0.02 3.14 16 32 H 0.07 2.78 7.53 -2.39 -0.02 2.76 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -67.41 349.49 2.38 -65.03 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -1.96 Total: 19.29 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.01 Total: -32.19 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -0.19 Total: -71.35 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.20 Total: -11.02 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.23 Total: -10.44 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -67.41 2.38 -65.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882189213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.307 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds