Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47428 * 331.70197 * 3 2 1 5 5 N 1.46496 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00053 * 269.99851 * 5 4 3 7 7 C 1.50698 * 109.47114 * 270.00318 * 6 5 4 8 8 H 1.08000 * 119.99717 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00282 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00099 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99832 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47298 * 89.99895 * 11 9 7 13 13 H 1.48500 * 109.47246 * 210.00310 * 11 9 7 14 14 H 1.48504 * 109.46868 * 329.99912 * 11 9 7 15 15 C 1.34773 * 120.00465 * 89.99731 * 5 4 3 16 16 O 1.21278 * 120.00441 * 180.02562 * 15 5 4 17 17 C 1.50705 * 119.99697 * 359.97438 * 15 5 4 18 18 N 1.46496 * 109.47151 * 179.97438 * 17 15 5 19 19 C 1.37003 * 126.40602 * 100.00283 * 18 17 15 20 20 C 1.34626 * 106.83120 * 179.97438 * 19 18 17 21 21 N 1.34176 * 108.04620 * 0.26782 * 20 19 18 22 22 C 1.30599 * 109.25438 * 359.55470 * 21 20 19 23 23 Br 1.89101 * 125.66050 * 180.17387 * 22 21 20 24 24 H 1.08995 * 109.47100 * 211.69681 * 3 2 1 25 25 H 1.09004 * 109.47202 * 91.70179 * 3 2 1 26 26 H 1.08995 * 109.46875 * 59.99673 * 4 3 2 27 27 H 1.09001 * 109.46257 * 299.99841 * 4 3 2 28 28 H 1.09004 * 109.46706 * 29.99559 * 6 5 4 29 29 H 1.08992 * 109.47521 * 149.99840 * 6 5 4 30 30 H 0.97004 * 120.00255 * 180.02562 * 10 9 7 31 31 H 1.09007 * 109.46801 * 60.00655 * 17 15 5 32 32 H 1.08998 * 109.47391 * 300.00253 * 17 15 5 33 33 H 1.07997 * 126.57868 * 359.94485 * 19 18 17 34 34 H 1.08002 * 125.97315 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.2692 0.6838 5 7 4.5836 -1.2682 0.6844 6 6 5.3169 -1.8691 -0.4326 7 6 5.5689 -3.3262 -0.1422 8 1 5.2182 -3.7610 0.7821 9 6 6.2470 -4.1041 -1.0565 10 7 6.4674 -5.3756 -0.8028 11 14 6.8529 -3.3521 -2.6555 12 1 8.2258 -2.8198 -2.4633 13 1 6.8688 -4.3910 -3.7164 14 1 5.9455 -2.2475 -3.0580 15 6 5.2568 -0.7146 1.7123 16 8 6.4696 -0.7134 1.7125 17 6 4.5025 -0.0960 2.8610 18 7 5.4538 0.4317 3.8421 19 6 5.8365 1.7398 3.9815 20 6 6.7192 1.7816 4.9972 21 7 6.8769 0.5330 5.4624 22 6 6.1173 -0.2804 4.7790 23 35 5.9761 -2.1465 5.0503 24 1 2.9709 0.8752 0.5399 25 1 2.9713 0.0313 -1.0272 26 1 2.7556 -2.1437 0.1438 27 1 2.7553 -1.2998 1.7110 28 1 4.7280 -1.7771 -1.3452 29 1 6.2689 -1.3542 -0.5611 30 1 6.9448 -5.9228 -1.4459 31 1 3.8759 -0.8525 3.3336 32 1 3.8757 0.7147 2.4896 33 1 5.4958 2.5766 3.3898 34 1 7.2172 2.6649 5.3689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919860471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = 72.193553 kcal Electronic energy + Delta-G solvation = -21179.703084 eV Core-core repulsion = 17775.113225 eV Total energy + Delta-G solvation = -3404.589859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15885 -39.55589 -37.10931 -35.60906 -34.15274 -32.85976 -31.84298 -31.22529 -29.29698 -28.55789 -27.02887 -24.29878 -22.77178 -21.56245 -20.80840 -19.05690 -17.99775 -17.57598 -17.08195 -16.89620 -15.76859 -15.26921 -14.93326 -14.89095 -14.41672 -14.08122 -13.95250 -13.80976 -13.37353 -13.24588 -12.75024 -12.69363 -12.57432 -12.38579 -11.97872 -11.74576 -11.24354 -11.07328 -10.96566 -10.67548 -10.55467 -10.33965 -10.19018 -10.14467 -9.68497 -9.25063 -8.70667 -8.43342 -8.15734 -6.19888 -4.20621 1.12290 1.79102 2.49560 2.59633 2.61964 2.82529 3.01280 3.19143 3.23786 3.27695 3.36328 3.88635 4.28143 4.42806 4.50324 4.61482 4.70983 4.85147 4.85441 5.12191 5.15262 5.20781 5.48187 5.52230 5.80673 5.98898 6.37517 6.57199 6.67478 6.74155 6.94794 7.37356 7.44039 7.76398 7.81976 8.28570 8.49828 8.83151 9.38572 10.93117 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.005208 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.495492 B = 5374.661215 C = 6936.205665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.213 3.787 3 C -0.050 4.050 4 C 0.111 3.889 5 N -0.585 5.585 6 C 0.216 3.784 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.892 5.892 11 Si 0.874 3.126 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.494 3.506 16 O -0.504 6.504 17 C 0.072 3.928 18 N -0.421 5.421 19 C -0.031 4.031 20 C -0.024 4.024 21 N -0.459 5.459 22 C 0.211 3.789 23 Br 0.066 6.934 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.182 0.818 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 13.205 8.096 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.106 4.106 3 C -0.092 4.092 4 C -0.015 4.015 5 N -0.317 5.317 6 C 0.097 3.903 7 C -0.573 4.573 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.278 3.722 16 O -0.378 6.378 17 C -0.055 4.055 18 N -0.105 5.105 19 C -0.166 4.166 20 C -0.173 4.173 21 N -0.179 5.179 22 C -0.128 4.128 23 Br 0.147 6.853 24 H 0.123 0.877 25 H 0.137 0.863 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.199 0.801 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.488 12.050 8.641 16.185 hybrid contribution 0.278 0.821 -1.739 1.943 sum -6.210 12.871 6.901 15.870 Atomic orbital electron populations 1.81242 1.12954 1.08362 1.08791 1.28974 0.94980 0.93368 0.93241 1.19873 0.81700 1.01635 1.05986 1.21440 0.81479 0.97057 1.01523 1.47850 1.05054 1.56688 1.22104 1.19790 0.92479 0.94699 0.83369 1.21243 1.37679 0.91902 1.06474 0.90500 1.24836 0.95105 0.94680 0.98142 1.69878 1.40869 1.06022 1.36185 0.86905 0.80200 0.79260 0.83603 1.19883 1.21005 1.19017 1.20217 0.88513 0.80022 0.83440 1.90799 1.13047 1.56732 1.77230 1.22051 0.91406 1.02015 0.89999 1.44906 1.33403 1.07362 1.24861 1.22806 1.03993 0.85998 1.03762 1.22331 1.01508 0.95338 0.98128 1.70357 1.19607 1.01039 1.26942 1.24585 0.99734 0.94042 0.94474 1.96895 1.97330 0.94849 1.96217 0.87695 0.86348 0.87790 0.90353 0.94669 0.94191 0.92399 0.86104 0.85816 0.80113 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.57 18.54 42.15 0.78 -4.79 16 2 C 0.21 2.06 15.43 -20.76 -0.32 1.74 16 3 C -0.05 -0.38 6.03 -29.51 -0.18 -0.55 16 4 C 0.11 1.17 5.17 -4.04 -0.02 1.15 16 5 N -0.58 -9.13 2.46 -175.06 -0.43 -9.56 16 6 C 0.22 4.42 4.23 -5.19 -0.02 4.40 16 7 C -0.53 -13.76 9.94 -34.44 -0.34 -14.11 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 11 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -5.52 6.54 56.52 0.37 -5.15 16 15 C 0.49 7.96 7.73 -10.98 -0.08 7.88 16 16 O -0.50 -10.79 15.86 5.56 0.09 -10.70 16 17 C 0.07 0.81 4.89 -5.19 -0.03 0.78 16 18 N -0.42 -5.70 2.31 -117.87 -0.27 -5.97 16 19 C -0.03 -0.36 11.57 -16.52 -0.19 -0.55 16 20 C -0.02 -0.30 11.86 -17.81 -0.21 -0.51 16 21 N -0.46 -7.50 11.26 -13.04 -0.15 -7.65 16 22 C 0.21 3.38 8.18 -90.24 -0.74 2.64 16 23 Br 0.07 1.03 33.64 -68.01 -2.29 -1.26 16 24 H 0.11 0.51 7.22 -51.93 -0.37 0.14 16 25 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.08 0.64 6.44 -51.93 -0.33 0.31 16 28 H 0.04 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.12 1.19 7.27 -51.93 -0.38 0.81 16 32 H 0.12 0.81 7.16 -51.93 -0.37 0.44 16 33 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -35.88 327.50 -6.92 -42.80 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.46 Total: -2.65 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.23 Total: 4.82 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.71 Total: -53.25 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 35 Polarization: 1.03 SS G_CDS: -2.29 Total: -1.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.88 -6.92 -42.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919860471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.997 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds