Wall clock time and date at job start Sat Apr 11 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47428 * 331.70197 * 3 2 1 5 5 N 1.46496 * 109.47191 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00053 * 269.99851 * 5 4 3 7 7 C 1.50698 * 109.47114 * 270.00318 * 6 5 4 8 8 H 1.08000 * 119.99717 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00282 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00099 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99832 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47298 * 89.99895 * 11 9 7 13 13 H 1.48500 * 109.47246 * 210.00310 * 11 9 7 14 14 H 1.48504 * 109.46868 * 329.99912 * 11 9 7 15 15 C 1.34773 * 120.00465 * 89.99731 * 5 4 3 16 16 O 1.21278 * 120.00441 * 180.02562 * 15 5 4 17 17 C 1.50705 * 119.99697 * 359.97438 * 15 5 4 18 18 N 1.46496 * 109.47151 * 179.97438 * 17 15 5 19 19 C 1.37003 * 126.40602 * 100.00283 * 18 17 15 20 20 C 1.34626 * 106.83120 * 179.97438 * 19 18 17 21 21 N 1.34176 * 108.04620 * 0.26782 * 20 19 18 22 22 C 1.30599 * 109.25438 * 359.55470 * 21 20 19 23 23 Br 1.89101 * 125.66050 * 180.17387 * 22 21 20 24 24 H 1.08995 * 109.47100 * 211.69681 * 3 2 1 25 25 H 1.09004 * 109.47202 * 91.70179 * 3 2 1 26 26 H 1.08995 * 109.46875 * 59.99673 * 4 3 2 27 27 H 1.09001 * 109.46257 * 299.99841 * 4 3 2 28 28 H 1.09004 * 109.46706 * 29.99559 * 6 5 4 29 29 H 1.08992 * 109.47521 * 149.99840 * 6 5 4 30 30 H 0.97004 * 120.00255 * 180.02562 * 10 9 7 31 31 H 1.09007 * 109.46801 * 60.00655 * 17 15 5 32 32 H 1.08998 * 109.47391 * 300.00253 * 17 15 5 33 33 H 1.07997 * 126.57868 * 359.94485 * 19 18 17 34 34 H 1.08002 * 125.97315 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.2692 0.6838 5 7 4.5836 -1.2682 0.6844 6 6 5.3169 -1.8691 -0.4326 7 6 5.5689 -3.3262 -0.1422 8 1 5.2182 -3.7610 0.7821 9 6 6.2470 -4.1041 -1.0565 10 7 6.4674 -5.3756 -0.8028 11 14 6.8529 -3.3521 -2.6555 12 1 8.2258 -2.8198 -2.4633 13 1 6.8688 -4.3910 -3.7164 14 1 5.9455 -2.2475 -3.0580 15 6 5.2568 -0.7146 1.7123 16 8 6.4696 -0.7134 1.7125 17 6 4.5025 -0.0960 2.8610 18 7 5.4538 0.4317 3.8421 19 6 5.8365 1.7398 3.9815 20 6 6.7192 1.7816 4.9972 21 7 6.8769 0.5330 5.4624 22 6 6.1173 -0.2804 4.7790 23 35 5.9761 -2.1465 5.0503 24 1 2.9709 0.8752 0.5399 25 1 2.9713 0.0313 -1.0272 26 1 2.7556 -2.1437 0.1438 27 1 2.7553 -1.2998 1.7110 28 1 4.7280 -1.7771 -1.3452 29 1 6.2689 -1.3542 -0.5611 30 1 6.9448 -5.9228 -1.4459 31 1 3.8759 -0.8525 3.3336 32 1 3.8757 0.7147 2.4896 33 1 5.4958 2.5766 3.3898 34 1 7.2172 2.6649 5.3689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919860471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:35 Heat of formation + Delta-G solvation = 47.625135 kcal Electronic energy + Delta-G solvation = -21180.768451 eV Core-core repulsion = 17775.113225 eV Total energy + Delta-G solvation = -3405.655226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.14687 -40.78079 -38.01809 -36.79363 -35.25941 -34.67298 -32.93270 -32.35374 -30.58210 -29.64885 -28.31578 -25.26538 -24.39612 -22.51035 -21.93092 -20.24044 -19.19027 -18.59232 -18.55019 -18.05355 -16.96890 -16.50617 -16.06807 -15.80822 -15.70431 -15.24482 -15.05143 -14.78401 -14.58498 -14.32089 -14.18264 -13.76289 -13.56671 -13.50735 -13.28583 -12.97107 -12.69315 -12.41172 -12.10576 -11.98504 -11.87529 -11.71989 -11.68315 -11.35017 -11.18088 -10.76616 -10.46740 -9.53613 -9.40450 -8.26828 -6.31209 0.03875 0.78530 1.37807 1.42634 1.48703 1.58034 1.62786 1.82471 1.89621 2.02840 2.28553 2.36446 3.05415 3.12557 3.54720 3.65610 3.78678 3.93605 4.09380 4.12544 4.43341 4.55257 4.60742 4.82834 4.86548 4.99480 5.07043 5.10719 5.51434 5.56402 5.64767 5.80769 6.27970 6.54032 6.67110 6.73311 6.83067 7.21335 7.35566 8.89899 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.005208 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.495492 B = 5374.661215 C = 6936.205665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.244 3.756 3 C -0.038 4.038 4 C 0.103 3.897 5 N -0.585 5.585 6 C 0.224 3.776 7 C -0.530 4.530 8 H 0.032 0.968 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.939 3.061 12 H -0.283 1.283 13 H -0.286 1.286 14 H -0.222 1.222 15 C 0.492 3.508 16 O -0.566 6.566 17 C 0.076 3.924 18 N -0.423 5.423 19 C -0.009 4.009 20 C -0.047 4.047 21 N -0.493 5.493 22 C 0.177 3.823 23 Br 0.048 6.952 24 H 0.146 0.854 25 H 0.131 0.869 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.135 0.865 32 H 0.185 0.815 33 H 0.232 0.768 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 16.864 6.895 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.073 4.073 3 C -0.078 4.078 4 C -0.021 4.021 5 N -0.315 5.315 6 C 0.102 3.898 7 C -0.569 4.569 8 H 0.050 0.950 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.763 3.237 12 H -0.209 1.209 13 H -0.212 1.212 14 H -0.144 1.144 15 C 0.278 3.722 16 O -0.444 6.444 17 C -0.049 4.049 18 N -0.107 5.107 19 C -0.144 4.144 20 C -0.196 4.196 21 N -0.215 5.215 22 C -0.162 4.162 23 Br 0.129 6.871 24 H 0.164 0.836 25 H 0.148 0.852 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.202 0.798 33 H 0.248 0.752 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.031 15.734 7.451 19.172 hybrid contribution 0.751 -0.306 -1.267 1.504 sum -7.280 15.428 6.184 18.146 Atomic orbital electron populations 1.81298 1.14792 1.10218 1.10769 1.29194 0.95022 0.91622 0.91472 1.19888 0.79813 1.01165 1.06982 1.21685 0.78327 0.98409 1.03682 1.47752 1.06936 1.55861 1.20993 1.19441 0.93174 0.91013 0.86197 1.21603 1.36121 0.94837 1.04309 0.94971 1.25824 0.95647 0.94980 1.02432 1.70060 1.42976 1.08038 1.37885 0.85847 0.79694 0.79458 0.78731 1.20901 1.21223 1.14423 1.21020 0.88045 0.79110 0.84023 1.90778 1.15916 1.59173 1.78508 1.22306 0.90621 1.04345 0.87663 1.45102 1.33352 1.07879 1.24404 1.23646 1.01945 0.86099 1.02671 1.22949 1.02611 0.94980 0.99057 1.70266 1.20268 1.02754 1.28186 1.24488 1.01667 0.93676 0.96379 1.96844 1.97392 0.96483 1.96383 0.83596 0.85159 0.89318 0.87577 0.91667 0.95734 0.92668 0.84737 0.79760 0.75172 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.33 18.54 20.01 0.37 -10.95 16 2 C 0.24 3.76 15.43 89.44 1.38 5.15 16 3 C -0.04 -0.36 6.03 28.79 0.17 -0.18 16 4 C 0.10 1.79 5.17 86.38 0.45 2.24 16 5 N -0.58 -16.69 2.46 -826.16 -2.03 -18.72 16 6 C 0.22 8.73 4.23 85.63 0.36 9.09 16 7 C -0.53 -27.74 9.94 25.60 0.25 -27.48 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.01 0.48 5.47 84.66 0.46 0.95 16 10 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 11 Si 0.94 40.86 27.47 68.60 1.88 42.75 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.22 -8.01 6.54 99.48 0.65 -7.36 16 15 C 0.49 14.64 7.73 87.66 0.68 15.32 16 16 O -0.57 -23.82 15.86 -3.02 -0.05 -23.87 16 17 C 0.08 1.39 4.89 85.64 0.42 1.80 16 18 N -0.42 -10.18 2.31 -526.82 -1.22 -11.40 16 19 C -0.01 -0.18 11.57 83.06 0.96 0.78 16 20 C -0.05 -1.10 11.86 83.51 0.99 -0.11 16 21 N -0.49 -15.82 11.26 -195.16 -2.20 -18.02 16 22 C 0.18 5.52 8.18 180.22 1.47 6.99 16 23 Br 0.05 1.53 33.64 -20.37 -0.69 0.85 16 24 H 0.15 0.30 7.22 -2.39 -0.02 0.29 16 25 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.09 1.87 8.07 -2.39 -0.02 1.85 16 27 H 0.11 1.28 6.44 -2.39 -0.02 1.26 16 28 H 0.07 2.19 7.13 -2.39 -0.02 2.17 16 29 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 30 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 31 H 0.13 2.16 7.27 -2.38 -0.02 2.14 16 32 H 0.19 1.06 7.16 -2.39 -0.02 1.04 16 33 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -86.31 327.50 5.06 -81.24 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 1.08 Total: 1.00 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 7.60 Total: 14.54 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -4.77 Total: -116.52 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.75 kcal Atomic # 35 Polarization: 1.53 SS G_CDS: -0.69 Total: 0.85 kcal Total: -86.31 5.06 -81.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919860471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.869 kcal (2) G-P(sol) polarization free energy of solvation -86.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds