Wall clock time and date at job start Sat Apr 11 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.46499 * 120.00271 * 300.00476 * 12 2 1 14 14 S 1.65611 * 119.99775 * 120.00228 * 12 2 1 15 15 O 1.42102 * 106.39852 * 203.53941 * 14 12 2 16 16 O 1.42098 * 106.40004 * 336.45813 * 14 12 2 17 17 N 1.65599 * 107.21496 * 90.00128 * 14 12 2 18 18 C 1.46496 * 120.00123 * 65.00012 * 17 14 12 19 19 C 1.53002 * 109.46976 * 164.99491 * 18 17 14 20 20 Br 1.96608 * 115.54856 * 34.42140 * 19 18 17 21 21 C 1.52995 * 117.50068 * 248.74780 * 19 18 17 22 22 C 1.53000 * 117.49849 * 180.08688 * 19 18 17 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47057 * 89.99771 * 13 12 2 28 28 H 1.09006 * 109.46711 * 209.99932 * 13 12 2 29 29 H 1.08998 * 109.46853 * 329.99725 * 13 12 2 30 30 H 0.96998 * 119.99747 * 244.99670 * 17 14 12 31 31 H 1.08995 * 109.47078 * 284.99839 * 18 17 14 32 32 H 1.08999 * 109.47444 * 44.99897 * 18 17 14 33 33 H 1.09000 * 117.49860 * 359.97438 * 21 19 18 34 34 H 1.09000 * 117.49974 * 145.02412 * 21 19 18 35 35 H 1.08999 * 117.50039 * 214.98465 * 22 19 18 36 36 H 1.09001 * 117.50198 * 359.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2863 15 8 2.8227 -0.5647 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1044 -1.8180 18 6 5.1356 -1.4443 -1.8415 19 6 6.6576 -1.3314 -1.7336 20 35 7.3213 0.1415 -0.6131 21 6 7.4832 -1.7096 -2.9649 22 6 7.4648 -2.6311 -1.7427 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.7090 1.1614 3.4844 27 1 0.7374 -2.1443 -1.9993 28 1 2.4628 -2.5819 -1.9864 29 1 1.5294 -2.5969 -0.4708 30 1 5.0733 0.6548 -1.5282 31 1 4.7538 -2.0249 -1.0018 32 1 4.8735 -1.9410 -2.7757 33 1 6.9420 -2.0393 -3.8518 34 1 8.3945 -1.1422 -3.1536 35 1 8.3640 -2.6695 -1.1279 36 1 6.9116 -3.5666 -1.8252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920058358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:40 Heat of formation + Delta-G solvation = -46.668727 kcal Electronic energy + Delta-G solvation = -20902.989613 eV Core-core repulsion = 17596.396698 eV Total energy + Delta-G solvation = -3306.592915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 340.024 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.15996 -36.66100 -36.14061 -35.25253 -34.09178 -32.59455 -30.10071 -29.08250 -26.38981 -25.48285 -25.17355 -22.80367 -20.84948 -20.39226 -18.80771 -17.21931 -16.92480 -16.47814 -16.23203 -15.49372 -14.89920 -14.41316 -14.13578 -13.87333 -13.42618 -13.21967 -12.72053 -12.13898 -11.98869 -11.95598 -11.81865 -11.58851 -11.53325 -11.37573 -11.22057 -11.18781 -10.96945 -10.86961 -10.84072 -10.40668 -10.21297 -10.08846 -9.99721 -9.70519 -9.34391 -9.10755 -8.47633 -7.96992 -6.08713 -4.16832 1.24184 1.44830 3.20737 3.24297 3.32818 3.34612 3.51239 4.13201 4.24089 4.36131 4.40038 4.47879 5.00377 5.19085 5.22358 5.30541 5.40934 5.53762 5.55254 5.67381 5.75990 5.99184 6.14847 6.32022 6.65328 6.87868 6.88144 7.11872 7.21579 7.52158 7.63430 7.79185 8.05613 8.26392 8.85899 9.49413 10.96483 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.005837 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.478067 B = 4795.783067 C = 6079.419854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.106 3.894 14 S 2.782 3.218 15 O -1.000 7.000 16 O -0.978 6.978 17 N -1.127 6.127 18 C 0.165 3.835 19 C -0.107 4.107 20 Br -0.098 7.098 21 C -0.153 4.153 22 C -0.148 4.148 23 H 0.032 0.968 24 H 0.092 0.908 25 H 0.012 0.988 26 H 0.263 0.737 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.415 0.585 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.087 -6.665 -8.143 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.041 4.041 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.963 6.963 17 N -0.889 5.889 18 C 0.037 3.963 19 C -0.186 4.186 20 Br -0.016 7.016 21 C -0.191 4.191 22 C -0.186 4.186 23 H 0.051 0.949 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.252 0.748 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.822 -5.683 -8.442 16.370 hybrid contribution 0.543 -0.593 1.301 1.530 sum 13.365 -6.277 -7.142 16.402 Atomic orbital electron populations 1.22050 0.97950 0.99631 1.00753 1.18741 0.91858 0.92804 0.80142 0.92319 1.21389 1.31684 1.13058 0.90114 0.91865 1.24918 0.94962 0.94972 0.98979 1.69895 1.36327 1.22615 1.23660 0.86494 0.78578 0.79633 0.82977 1.19783 1.21013 1.21048 1.57706 1.64370 1.21334 1.39815 1.21207 0.98950 0.82102 1.01844 1.01804 0.72505 0.73249 0.73347 1.93532 1.86067 1.76413 1.42286 1.93598 1.83484 1.32349 1.86823 1.56239 1.32629 1.14467 1.85575 1.20771 0.87811 0.84923 1.02829 1.25114 0.95650 0.95683 1.02118 1.97364 1.87097 1.47820 1.69360 1.23480 1.01536 1.01889 0.92191 1.23354 1.01514 0.93041 1.00722 0.94885 0.88920 0.96904 0.92722 0.93812 0.93413 0.90115 0.74843 0.90042 0.89344 0.87035 0.87497 0.87296 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.27 6.50 2.62 -69.08 -0.18 6.32 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.52 -13.28 7.99 -34.44 -0.28 -13.55 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.99 -20.20 3.12 -115.85 -0.36 -20.56 16 13 C 0.11 1.81 9.28 59.85 0.56 2.36 16 14 S 2.78 54.56 6.10 -107.50 -0.66 53.91 16 15 O -1.00 -20.00 16.68 -57.17 -0.95 -20.95 16 16 O -0.98 -22.64 16.70 -57.17 -0.95 -23.59 16 17 N -1.13 -18.44 5.96 -10.62 -0.06 -18.50 16 18 C 0.16 2.18 6.42 -4.04 -0.03 2.15 16 19 C -0.11 -1.21 2.93 -90.62 -0.27 -1.47 16 20 Br -0.10 -1.28 31.94 -68.01 -2.17 -3.45 16 21 C -0.15 -1.31 10.00 -26.70 -0.27 -1.58 16 22 C -0.15 -1.22 10.07 -26.69 -0.27 -1.49 16 23 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 30 H 0.41 6.75 6.71 -34.47 -0.23 6.52 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.04 7.51 -51.93 -0.39 0.65 16 33 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -30.96 328.50 -10.03 -40.99 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.94 Total: 4.37 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.49 Total: -8.76 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.20 Total: -62.85 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.91 Total: -44.55 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 54.56 SS G_CDS: -0.66 Total: 53.91 kcal Atomic # 35 Polarization: -1.28 SS G_CDS: -2.17 Total: -3.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.96 -10.03 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920058358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.677 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds