Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32093 * 122.70729 * 2 1 4 4 C 1.29753 * 116.85489 * 180.02562 * 3 2 1 5 5 S 1.76207 * 124.95232 * 180.02562 * 4 3 2 6 6 S 1.70966 * 110.09343 * 359.74980 * 4 3 2 7 7 C 1.33337 * 122.70310 * 180.02562 * 2 1 3 8 8 C 1.50696 * 125.95019 * 359.93854 * 7 2 1 9 9 C 1.50695 * 109.47115 * 90.00099 * 8 7 2 10 10 O 1.21283 * 120.00010 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00368 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00364 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47166 * 35.00564 * 12 11 9 14 14 C 1.50703 * 109.47098 * 155.00092 * 12 11 9 15 15 H 1.07999 * 120.00054 * 5.39654 * 14 12 11 16 16 C 1.37878 * 120.00239 * 185.39459 * 14 12 11 17 17 N 1.31513 * 119.99585 * 20.76239 * 16 14 12 18 18 Si 1.86791 * 120.00307 * 201.03427 * 16 14 12 19 19 H 1.48503 * 109.47259 * 179.72435 * 18 16 14 20 20 H 1.48494 * 109.47345 * 299.72968 * 18 16 14 21 21 H 1.48507 * 109.46860 * 59.72753 * 18 16 14 22 22 C 1.52996 * 109.47497 * 275.00301 * 12 11 9 23 23 F 1.39904 * 109.47224 * 294.83225 * 22 12 11 24 24 F 1.39905 * 109.46710 * 54.83006 * 22 12 11 25 25 F 1.39902 * 109.47423 * 174.83102 * 22 12 11 26 26 H 1.08997 * 109.46984 * 269.96259 * 1 2 3 27 27 H 1.09004 * 109.46607 * 29.96242 * 1 2 3 28 28 H 1.08995 * 109.47133 * 149.95494 * 1 2 3 29 29 H 1.40997 * 99.99975 * 89.97415 * 5 4 3 30 30 H 1.09005 * 109.47291 * 330.00453 * 8 7 2 31 31 H 1.08997 * 109.47096 * 210.00686 * 8 7 2 32 32 H 0.97001 * 119.99818 * 0.02562 * 11 9 8 33 33 H 0.96999 * 120.00681 * 355.81865 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.1115 0.0000 4 6 3.5116 0.9792 -0.0005 5 16 4.6630 2.3130 0.0000 6 16 3.9321 -0.6779 0.0059 7 6 2.2274 -1.1220 -0.0005 8 6 1.6789 -2.5256 0.0002 9 6 1.4948 -2.9936 -1.4204 10 8 1.7813 -2.2599 -2.3426 11 7 1.0127 -4.2280 -1.6661 12 6 0.8332 -4.6828 -3.0471 13 1 1.6260 -4.2706 -3.6713 14 6 0.8903 -6.1881 -3.0916 15 1 0.9572 -6.7533 -2.1738 16 6 0.8570 -6.8437 -4.3041 17 7 1.1827 -6.2045 -5.4064 18 14 0.3420 -8.6375 -4.3822 19 1 0.3830 -9.1034 -5.7916 20 1 1.2720 -9.4556 -3.5632 21 1 -1.0386 -8.7796 -3.8538 22 6 -0.5248 -4.2083 -3.5679 23 9 -1.5461 -4.8299 -2.8414 24 9 -0.6232 -2.8209 -3.4171 25 9 -0.6471 -4.5401 -4.9215 26 1 -0.3633 -0.0007 1.0276 27 1 -0.3633 0.8904 -0.5133 28 1 -0.3633 -0.8895 -0.5145 29 1 4.8230 2.4977 1.3886 30 1 0.7181 -2.5400 0.5148 31 1 2.3759 -3.1878 0.5136 32 1 0.7839 -4.8150 -0.9286 33 1 1.3875 -5.2569 -5.3751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928810954.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -148.530783 kcal Electronic energy + Delta-G solvation = -25558.311833 eV Core-core repulsion = 21229.225420 eV Total energy + Delta-G solvation = -4329.086413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.027 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.85486 -46.39623 -46.31734 -40.17824 -39.01977 -35.07672 -33.38188 -32.74653 -30.30813 -28.30836 -26.17594 -24.78285 -24.54497 -21.98854 -20.33801 -19.44838 -18.70535 -17.94179 -17.47517 -17.36091 -17.05992 -16.78513 -16.42213 -15.63295 -15.06347 -14.83162 -14.17680 -13.87029 -13.79852 -13.47896 -13.31258 -13.23358 -12.95281 -12.83420 -12.81752 -12.66351 -12.64886 -12.52804 -12.36796 -12.12693 -11.46256 -11.41654 -11.22565 -11.12199 -10.85801 -10.25771 -9.98401 -9.70160 -9.57254 -9.30703 -8.82395 -8.58669 -8.53166 -8.50536 -6.81675 -4.59274 0.22254 0.81747 1.37055 1.53599 2.04329 2.65906 2.90653 3.26061 3.33277 3.49577 3.57157 4.10620 4.25315 4.30907 4.50710 4.82258 4.86594 5.05226 5.27456 5.33699 5.39470 5.50357 5.51151 5.62174 5.65912 5.73446 6.13658 6.53110 6.85378 7.20947 7.39898 7.95765 8.05858 8.36869 8.59169 9.11985 10.54935 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.003152 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.670710 B = 8880.038782 C = 9289.513472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 N -0.418 5.418 4 C -0.005 4.005 5 S -0.036 6.036 6 S 0.201 5.799 7 C -0.175 4.175 8 C -0.070 4.070 9 C 0.506 3.494 10 O -0.524 6.524 11 N -0.704 5.704 12 C 0.235 3.765 13 H 0.079 0.921 14 C -0.640 4.640 15 H 0.074 0.926 16 C 0.040 3.960 17 N -0.854 5.854 18 Si 1.072 2.928 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.281 1.281 22 C 0.414 3.586 23 F -0.194 7.194 24 F -0.206 7.206 25 F -0.177 7.177 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.402 0.598 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 8.325 14.312 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 N -0.135 5.135 4 C -0.390 4.390 5 S 0.117 5.883 6 S 0.453 5.547 7 C -0.299 4.299 8 C -0.113 4.113 9 C 0.289 3.711 10 O -0.400 6.400 11 N -0.353 5.353 12 C 0.128 3.872 13 H 0.097 0.903 14 C -0.675 4.675 15 H 0.092 0.908 16 C -0.173 4.173 17 N -0.484 5.484 18 Si 0.898 3.102 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.207 1.207 22 C 0.358 3.642 23 F -0.176 7.176 24 F -0.188 7.188 25 F -0.159 7.159 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.236 0.764 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.350 8.374 12.330 15.527 hybrid contribution -1.788 0.579 2.118 2.832 sum 2.561 8.952 14.448 17.189 Atomic orbital electron populations 1.20391 0.86678 1.04164 1.02630 1.20180 0.98381 0.85998 1.02324 1.66973 1.03635 1.31322 1.11604 1.27194 0.97101 1.00284 1.14460 1.86988 1.48150 1.40969 1.12239 1.84003 1.05639 1.00498 1.64570 1.25301 0.96160 0.99548 1.08865 1.20175 1.03717 0.90668 0.96712 1.20318 0.78076 0.82211 0.90445 1.90748 1.49452 1.54074 1.45700 1.45881 1.64985 1.14876 1.09596 1.19749 0.88521 0.97995 0.80919 0.90311 1.21652 1.61542 0.87378 0.96968 0.90788 1.26015 0.92302 1.07497 0.91520 1.70755 1.34272 1.12548 1.30795 0.83496 0.76934 0.73139 0.76653 1.20328 1.20980 1.20677 1.23082 0.91545 0.73414 0.76117 1.93029 1.63708 1.82922 1.77939 1.93095 1.97066 1.33123 1.95541 1.93150 1.96576 1.92162 1.33981 0.90621 0.90265 0.90375 0.93569 0.86524 0.87299 0.76361 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.80 36.01 0.35 -0.61 16 2 C 0.07 0.97 6.74 -84.19 -0.57 0.41 16 3 N -0.42 -6.34 10.59 -10.94 -0.12 -6.45 16 4 C 0.00 -0.07 7.68 51.88 0.40 0.33 16 5 S -0.04 -0.39 26.26 -107.50 -2.82 -3.21 16 6 S 0.20 2.54 23.19 -107.50 -2.49 0.05 16 7 C -0.18 -2.41 5.06 -36.02 -0.18 -2.59 16 8 C -0.07 -0.86 5.62 -29.04 -0.16 -1.02 16 9 C 0.51 8.91 7.24 -10.99 -0.08 8.83 16 10 O -0.52 -11.49 14.65 5.55 0.08 -11.41 16 11 N -0.70 -13.00 5.02 -54.94 -0.28 -13.28 16 12 C 0.23 5.48 1.92 -69.09 -0.13 5.35 16 13 H 0.08 2.07 6.61 -51.93 -0.34 1.73 16 14 C -0.64 -15.77 8.21 -34.44 -0.28 -16.05 16 15 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.04 1.02 4.71 -17.82 -0.08 0.94 16 17 N -0.85 -23.78 12.43 55.43 0.69 -23.09 16 18 Si 1.07 22.88 29.95 -169.99 -5.09 17.79 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 22 C 0.41 9.92 2.82 37.16 0.10 10.03 16 23 F -0.19 -4.47 16.87 2.25 0.04 -4.43 16 24 F -0.21 -4.84 15.55 2.25 0.04 -4.81 16 25 F -0.18 -4.62 14.13 2.25 0.03 -4.59 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.99 7.33 -51.93 -0.38 0.61 16 29 H 0.10 0.82 9.55 96.90 0.93 1.74 16 30 H 0.12 1.11 7.41 -51.93 -0.38 0.72 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 6.18 8.53 -40.82 -0.35 5.83 16 33 H 0.28 7.91 6.04 -40.82 -0.25 7.66 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -31.24 327.50 -6.88 -38.11 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.25 Total: 4.77 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.64 Total: 5.61 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.30 Total: -42.82 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 0.10 Total: -13.82 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.09 Total: 17.79 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -5.32 Total: -3.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.24 -6.88 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810954.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.420 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds