Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32093 * 122.70729 * 2 1 4 4 C 1.29753 * 116.85489 * 180.02562 * 3 2 1 5 5 S 1.76207 * 124.95232 * 180.02562 * 4 3 2 6 6 S 1.70966 * 110.09343 * 359.74980 * 4 3 2 7 7 C 1.33337 * 122.70310 * 180.02562 * 2 1 3 8 8 C 1.50696 * 125.95019 * 359.93854 * 7 2 1 9 9 C 1.50695 * 109.47115 * 90.00099 * 8 7 2 10 10 O 1.21283 * 120.00010 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00368 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00364 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47166 * 35.00564 * 12 11 9 14 14 C 1.50703 * 109.47098 * 155.00092 * 12 11 9 15 15 H 1.07999 * 120.00054 * 5.39654 * 14 12 11 16 16 C 1.37878 * 120.00239 * 185.39459 * 14 12 11 17 17 N 1.31513 * 119.99585 * 20.76239 * 16 14 12 18 18 Si 1.86791 * 120.00307 * 201.03427 * 16 14 12 19 19 H 1.48503 * 109.47259 * 179.72435 * 18 16 14 20 20 H 1.48494 * 109.47345 * 299.72968 * 18 16 14 21 21 H 1.48507 * 109.46860 * 59.72753 * 18 16 14 22 22 C 1.52996 * 109.47497 * 275.00301 * 12 11 9 23 23 F 1.39904 * 109.47224 * 294.83225 * 22 12 11 24 24 F 1.39905 * 109.46710 * 54.83006 * 22 12 11 25 25 F 1.39902 * 109.47423 * 174.83102 * 22 12 11 26 26 H 1.08997 * 109.46984 * 269.96259 * 1 2 3 27 27 H 1.09004 * 109.46607 * 29.96242 * 1 2 3 28 28 H 1.08995 * 109.47133 * 149.95494 * 1 2 3 29 29 H 1.40997 * 99.99975 * 89.97415 * 5 4 3 30 30 H 1.09005 * 109.47291 * 330.00453 * 8 7 2 31 31 H 1.08997 * 109.47096 * 210.00686 * 8 7 2 32 32 H 0.97001 * 119.99818 * 0.02562 * 11 9 8 33 33 H 0.96999 * 120.00681 * 355.81865 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.1115 0.0000 4 6 3.5116 0.9792 -0.0005 5 16 4.6630 2.3130 0.0000 6 16 3.9321 -0.6779 0.0059 7 6 2.2274 -1.1220 -0.0005 8 6 1.6789 -2.5256 0.0002 9 6 1.4948 -2.9936 -1.4204 10 8 1.7813 -2.2599 -2.3426 11 7 1.0127 -4.2280 -1.6661 12 6 0.8332 -4.6828 -3.0471 13 1 1.6260 -4.2706 -3.6713 14 6 0.8903 -6.1881 -3.0916 15 1 0.9572 -6.7533 -2.1738 16 6 0.8570 -6.8437 -4.3041 17 7 1.1827 -6.2045 -5.4064 18 14 0.3420 -8.6375 -4.3822 19 1 0.3830 -9.1034 -5.7916 20 1 1.2720 -9.4556 -3.5632 21 1 -1.0386 -8.7796 -3.8538 22 6 -0.5248 -4.2083 -3.5679 23 9 -1.5461 -4.8299 -2.8414 24 9 -0.6232 -2.8209 -3.4171 25 9 -0.6471 -4.5401 -4.9215 26 1 -0.3633 -0.0007 1.0276 27 1 -0.3633 0.8904 -0.5133 28 1 -0.3633 -0.8895 -0.5145 29 1 4.8230 2.4977 1.3886 30 1 0.7181 -2.5400 0.5148 31 1 2.3759 -3.1878 0.5136 32 1 0.7839 -4.8150 -0.9286 33 1 1.3875 -5.2569 -5.3751 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928810954.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = -169.795469 kcal Electronic energy + Delta-G solvation = -25559.233939 eV Core-core repulsion = 21229.225420 eV Total energy + Delta-G solvation = -4330.008519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.027 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.80030 -48.33786 -48.27414 -41.31035 -40.38245 -36.81361 -34.67234 -34.33505 -31.45423 -29.90980 -27.25108 -26.50919 -25.86114 -23.76324 -21.83806 -20.51294 -19.95231 -19.46728 -19.27112 -18.98476 -18.60058 -18.23603 -18.00023 -16.66288 -16.55462 -16.01875 -15.69054 -15.47453 -15.22673 -15.18741 -14.81124 -14.76537 -14.64306 -14.56556 -14.47769 -14.40789 -14.12922 -13.85603 -13.65428 -13.31701 -13.07445 -12.96502 -12.53197 -12.32698 -12.19235 -11.92278 -11.40927 -11.15488 -10.97531 -10.47961 -10.37243 -10.22212 -9.81346 -9.39601 -8.83672 -6.61307 -0.77412 -0.11894 0.41066 0.54799 1.18213 1.49425 1.57675 1.66445 1.70171 1.84357 2.07841 2.27334 2.50982 2.91881 3.31210 3.41447 3.48913 3.57607 3.61669 3.90013 4.00132 4.39780 4.43024 4.59815 4.66569 4.67875 4.76750 5.18922 5.26426 5.35487 6.02459 6.29833 6.38590 6.59674 7.12638 7.26414 8.51459 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.003152 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.670710 B = 8880.038782 C = 9289.513472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.446 5.446 4 C -0.015 4.015 5 S -0.042 6.042 6 S 0.220 5.780 7 C -0.193 4.193 8 C -0.058 4.058 9 C 0.504 3.496 10 O -0.572 6.572 11 N -0.697 5.697 12 C 0.239 3.761 13 H 0.043 0.957 14 C -0.639 4.639 15 H 0.090 0.910 16 C -0.007 4.007 17 N -0.886 5.886 18 Si 1.114 2.886 19 H -0.289 1.289 20 H -0.258 1.258 21 H -0.268 1.268 22 C 0.415 3.585 23 F -0.186 7.186 24 F -0.205 7.205 25 F -0.193 7.193 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.419 0.581 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 7.485 16.862 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 N -0.164 5.164 4 C -0.400 4.400 5 S 0.109 5.891 6 S 0.473 5.527 7 C -0.316 4.316 8 C -0.099 4.099 9 C 0.290 3.710 10 O -0.450 6.450 11 N -0.349 5.349 12 C 0.131 3.869 13 H 0.060 0.940 14 C -0.675 4.675 15 H 0.108 0.892 16 C -0.213 4.213 17 N -0.517 5.517 18 Si 0.934 3.066 19 H -0.214 1.214 20 H -0.182 1.182 21 H -0.193 1.193 22 C 0.359 3.641 23 F -0.168 7.168 24 F -0.186 7.186 25 F -0.174 7.174 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.257 0.743 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.249 7.531 14.947 17.268 hybrid contribution -1.704 0.962 1.376 2.392 sum 2.545 8.493 16.323 18.576 Atomic orbital electron populations 1.20435 0.85612 1.03368 1.04256 1.20548 0.99368 0.86194 1.02175 1.67028 1.04376 1.32054 1.12972 1.27600 0.97190 1.01574 1.13640 1.86960 1.47012 1.40215 1.14874 1.83856 1.05161 0.99836 1.63830 1.25509 0.96668 1.00032 1.09429 1.20239 1.06491 0.90299 0.92918 1.21249 0.76294 0.81062 0.92361 1.90734 1.51211 1.55194 1.47876 1.45745 1.65238 1.15836 1.08040 1.19322 0.87050 0.97457 0.83042 0.93965 1.21973 1.60106 0.88059 0.97355 0.89180 1.27392 0.91548 1.10910 0.91486 1.70878 1.37133 1.11731 1.31989 0.82983 0.77754 0.69328 0.76535 1.21440 1.18216 1.19319 1.23086 0.91974 0.73545 0.75530 1.93035 1.63381 1.82781 1.77590 1.93096 1.97085 1.32977 1.95468 1.93121 1.96677 1.92312 1.35321 0.87744 0.91045 0.91091 0.90484 0.83126 0.83812 0.74300 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.80 71.24 0.70 -1.07 16 2 C 0.05 1.47 6.74 41.41 0.28 1.75 16 3 N -0.45 -13.18 10.59 -188.53 -2.00 -15.18 16 4 C -0.02 -0.40 7.68 130.55 1.00 0.60 16 5 S -0.04 -0.87 26.26 -56.49 -1.48 -2.36 16 6 S 0.22 5.28 23.19 -56.49 -1.31 3.97 16 7 C -0.19 -4.95 5.06 24.58 0.12 -4.83 16 8 C -0.06 -1.25 5.62 29.10 0.16 -1.08 16 9 C 0.50 17.09 7.24 87.66 0.63 17.73 16 10 O -0.57 -25.20 14.65 -3.04 -0.04 -25.25 16 11 N -0.70 -24.76 5.02 -446.11 -2.24 -27.00 16 12 C 0.24 11.20 1.92 44.25 0.09 11.28 16 13 H 0.04 2.32 6.61 -2.39 -0.02 2.30 16 14 C -0.64 -30.91 8.21 25.60 0.21 -30.70 16 15 H 0.09 3.99 7.81 -2.91 -0.02 3.97 16 16 C -0.01 -0.36 4.71 84.66 0.40 0.03 16 17 N -0.89 -50.34 12.43 21.45 0.27 -50.07 16 18 Si 1.11 44.84 29.95 68.60 2.05 46.90 16 19 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 22 C 0.41 19.90 2.82 71.98 0.20 20.10 16 23 F -0.19 -8.34 16.87 44.97 0.76 -7.58 16 24 F -0.20 -9.65 15.55 44.97 0.70 -8.95 16 25 F -0.19 -10.26 14.13 44.97 0.64 -9.62 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.07 1.70 7.33 -2.39 -0.02 1.69 16 29 H 0.13 1.85 9.55 73.80 0.70 2.55 16 30 H 0.15 2.25 7.41 -2.38 -0.02 2.23 16 31 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.42 11.74 8.53 -92.71 -0.79 10.95 16 33 H 0.26 15.48 6.04 -92.71 -0.56 14.92 16 Total: -1.00 -69.03 327.50 2.48 -66.55 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.34 Total: 14.78 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 3.80 Total: 13.82 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -3.97 Total: -92.25 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 9 Polarization: -28.25 SS G_CDS: 2.09 Total: -26.15 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.05 Total: 46.90 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -2.79 Total: 1.61 kcal Total: -69.03 2.48 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928810954.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.246 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds