Wall clock time and date at job start Sat Apr 11 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21282 * 120.00331 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99692 * 180.02562 * 12 11 9 15 15 S 1.81406 * 109.46794 * 180.02562 * 14 12 11 16 16 C 1.81394 * 102.99693 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.33639 * 122.74663 * 269.73891 * 17 16 15 19 19 S 1.76205 * 107.92363 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28247 * 0.27211 * 19 18 17 21 21 N 1.29033 * 110.16357 * 359.83704 * 20 19 18 22 22 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 23 23 F 1.39903 * 109.47440 * 60.00123 * 22 9 7 24 24 F 1.39899 * 109.47255 * 180.02562 * 22 9 7 25 25 F 1.39900 * 109.47102 * 299.99874 * 22 9 7 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 28 28 H 1.09003 * 109.46726 * 300.00059 * 14 12 11 29 29 H 1.08992 * 109.47335 * 60.00408 * 14 12 11 30 30 H 1.09005 * 109.47578 * 299.99735 * 16 15 14 31 31 H 1.09003 * 109.47306 * 60.00264 * 16 15 14 32 32 H 1.07997 * 126.04058 * 0.02562 * 18 17 16 33 33 H 1.07995 * 124.92162 * 179.83960 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7194 -4.9699 -0.9381 14 6 2.8160 -5.9580 -0.4932 15 16 2.0310 -7.4246 -1.2168 16 6 3.3431 -8.6741 -1.1303 17 6 2.8385 -9.9730 -1.7042 18 6 2.2392 -10.9076 -0.9603 19 16 1.8114 -12.2505 -2.0179 20 6 2.4881 -11.4252 -3.3536 21 7 2.9575 -10.2830 -2.9794 22 6 0.3719 -2.5805 1.2490 23 9 -0.5373 -1.5171 1.2496 24 9 -0.3272 -3.7922 1.2493 25 9 1.1766 -2.5067 2.3910 26 1 -0.4850 0.8401 0.0004 27 1 3.0969 -3.4866 0.3545 28 1 3.6922 -5.6872 -1.0824 29 1 3.1197 -6.1758 0.5306 30 1 4.2061 -8.3352 -1.7035 31 1 3.6337 -8.8245 -0.0906 32 1 2.0498 -10.8497 0.1014 33 1 2.5182 -11.8048 -4.3642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:52 Heat of formation + Delta-G solvation = -121.634296 kcal Electronic energy + Delta-G solvation = -24446.651039 eV Core-core repulsion = 20118.730945 eV Total energy + Delta-G solvation = -4327.920094 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.027 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.37966 -46.03376 -45.64142 -40.07063 -38.97084 -34.73674 -32.67279 -32.31498 -30.37399 -28.17543 -27.59686 -25.10495 -24.59234 -21.77204 -20.15870 -19.85153 -18.54448 -17.59501 -16.94484 -16.69354 -16.58503 -16.20191 -16.00852 -15.83187 -15.15873 -14.91786 -14.80316 -14.11399 -13.91211 -13.61333 -13.39297 -13.24992 -12.97137 -12.82537 -12.47605 -12.42349 -12.34835 -12.28414 -12.00896 -11.84470 -11.69134 -11.18643 -10.91868 -10.82064 -10.44271 -10.06835 -9.96818 -9.76529 -9.70871 -9.40580 -9.06623 -8.77071 -8.35933 -7.57434 -6.27210 -4.51830 0.35162 1.06892 1.31974 1.44355 2.41621 2.80809 3.06424 3.16967 3.22862 3.25255 3.73165 3.84092 4.17855 4.52055 4.62583 4.72405 4.89483 4.99793 5.08547 5.10152 5.16846 5.32024 5.34758 5.75727 5.80493 5.83537 6.17243 6.87153 7.07162 7.40320 7.40934 7.58968 8.19442 8.44715 8.75813 9.16105 10.64420 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.002349 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.413791 B =11918.154426 C =12366.717616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.246 3.754 10 H 0.087 0.913 11 N -0.707 5.707 12 C 0.521 3.479 13 O -0.515 6.515 14 C -0.130 4.130 15 S -0.155 6.155 16 C -0.040 4.040 17 C 0.083 3.917 18 C -0.235 4.235 19 S 0.122 5.878 20 C 0.024 3.976 21 N -0.458 5.458 22 C 0.417 3.583 23 F -0.136 7.136 24 F -0.217 7.217 25 F -0.209 7.209 26 H 0.269 0.731 27 H 0.400 0.600 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.744 -19.684 -1.299 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.590 4.590 8 H 0.096 0.904 9 C 0.141 3.859 10 H 0.104 0.896 11 N -0.358 5.358 12 C 0.304 3.696 13 O -0.390 6.390 14 C -0.281 4.281 15 S 0.072 5.928 16 C -0.191 4.191 17 C -0.050 4.050 18 C -0.377 4.377 19 S 0.374 5.626 20 C -0.275 4.275 21 N -0.171 5.171 22 C 0.360 3.640 23 F -0.117 7.117 24 F -0.199 7.199 25 F -0.191 7.191 26 H 0.080 0.920 27 H 0.234 0.766 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.199 0.801 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.453 -20.354 -2.304 21.197 hybrid contribution 2.255 1.820 1.333 3.190 sum 7.708 -18.534 -0.971 20.096 Atomic orbital electron populations 1.70400 1.05878 1.27464 1.43421 1.25094 0.95170 1.00170 0.93992 0.86197 0.79536 0.81578 0.78440 1.20195 1.19469 1.20753 1.20863 0.93778 0.88031 1.56368 0.90400 1.19759 0.88693 0.85637 0.91840 0.89590 1.45975 1.17351 1.10220 1.62206 1.19577 0.87856 0.83289 0.78831 1.90757 1.20660 1.82340 1.45241 1.23577 1.02551 0.96485 1.05513 1.87851 1.18808 1.04137 1.82029 1.21913 1.00956 0.92792 1.03417 1.19385 1.01152 0.96322 0.88144 1.26898 1.07774 0.97429 1.05608 1.84058 1.55696 1.21425 1.01405 1.28406 1.00957 0.93728 1.04449 1.66067 1.19292 1.16090 1.15691 1.23129 0.80898 0.72863 0.87081 1.93408 1.68361 1.53762 1.96192 1.93078 1.81499 1.48338 1.96968 1.92987 1.74395 1.96194 1.55562 0.92039 0.76647 0.87222 0.87386 0.88254 0.88440 0.80090 0.78185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.89 9.50 55.43 0.53 -22.36 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -13.89 8.46 -34.44 -0.29 -14.18 16 8 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 9 C 0.25 6.04 2.21 -69.09 -0.15 5.89 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.71 -13.96 4.98 -54.93 -0.27 -14.23 16 12 C 0.52 10.05 7.38 -10.98 -0.08 9.97 16 13 O -0.51 -12.17 14.44 5.56 0.08 -12.09 16 14 C -0.13 -1.77 6.42 36.01 0.23 -1.54 16 15 S -0.16 -2.30 20.86 -107.50 -2.24 -4.54 16 16 C -0.04 -0.42 6.36 36.01 0.23 -0.20 16 17 C 0.08 0.91 6.00 -84.23 -0.51 0.41 16 18 C -0.23 -2.13 11.13 29.12 0.32 -1.81 16 19 S 0.12 0.89 23.22 -107.50 -2.50 -1.60 16 20 C 0.02 0.20 12.23 51.59 0.63 0.83 16 21 N -0.46 -5.34 10.53 -11.90 -0.13 -5.47 16 22 C 0.42 10.62 2.81 37.16 0.10 10.72 16 23 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 24 F -0.22 -5.52 15.68 2.25 0.04 -5.49 16 25 F -0.21 -5.10 16.94 2.25 0.04 -5.06 16 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.40 6.58 8.54 -40.82 -0.35 6.23 16 28 H 0.11 1.22 8.14 -51.92 -0.42 0.79 16 29 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 31 H 0.10 0.79 8.12 -51.92 -0.42 0.37 16 32 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -32.60 328.96 -6.91 -39.51 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -2.82 Total: 3.59 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 0.40 Total: 11.66 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.13 Total: -42.06 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 9 Polarization: -14.38 SS G_CDS: 0.10 Total: -14.28 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -4.74 Total: -6.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.60 -6.91 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.126 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds