Wall clock time and date at job start Sat Apr 11 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21282 * 120.00331 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99692 * 180.02562 * 12 11 9 15 15 S 1.81406 * 109.46794 * 180.02562 * 14 12 11 16 16 C 1.81394 * 102.99693 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.33639 * 122.74663 * 269.73891 * 17 16 15 19 19 S 1.76205 * 107.92363 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28247 * 0.27211 * 19 18 17 21 21 N 1.29033 * 110.16357 * 359.83704 * 20 19 18 22 22 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 23 23 F 1.39903 * 109.47440 * 60.00123 * 22 9 7 24 24 F 1.39899 * 109.47255 * 180.02562 * 22 9 7 25 25 F 1.39900 * 109.47102 * 299.99874 * 22 9 7 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 28 28 H 1.09003 * 109.46726 * 300.00059 * 14 12 11 29 29 H 1.08992 * 109.47335 * 60.00408 * 14 12 11 30 30 H 1.09005 * 109.47578 * 299.99735 * 16 15 14 31 31 H 1.09003 * 109.47306 * 60.00264 * 16 15 14 32 32 H 1.07997 * 126.04058 * 0.02562 * 18 17 16 33 33 H 1.07995 * 124.92162 * 179.83960 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7194 -4.9699 -0.9381 14 6 2.8160 -5.9580 -0.4932 15 16 2.0310 -7.4246 -1.2168 16 6 3.3431 -8.6741 -1.1303 17 6 2.8385 -9.9730 -1.7042 18 6 2.2392 -10.9076 -0.9603 19 16 1.8114 -12.2505 -2.0179 20 6 2.4881 -11.4252 -3.3536 21 7 2.9575 -10.2830 -2.9794 22 6 0.3719 -2.5805 1.2490 23 9 -0.5373 -1.5171 1.2496 24 9 -0.3272 -3.7922 1.2493 25 9 1.1766 -2.5067 2.3910 26 1 -0.4850 0.8401 0.0004 27 1 3.0969 -3.4866 0.3545 28 1 3.6922 -5.6872 -1.0824 29 1 3.1197 -6.1758 0.5306 30 1 4.2061 -8.3352 -1.7035 31 1 3.6337 -8.8245 -0.0906 32 1 2.0498 -10.8497 0.1014 33 1 2.5182 -11.8048 -4.3642 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:51 Heat of formation + Delta-G solvation = -143.895549 kcal Electronic energy + Delta-G solvation = -24447.616359 eV Core-core repulsion = 20118.730945 eV Total energy + Delta-G solvation = -4328.885414 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.027 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.43322 -48.06648 -47.74316 -40.77581 -40.56261 -36.54374 -34.51708 -33.04251 -31.83513 -29.45225 -28.70304 -26.59367 -25.77703 -23.63232 -21.73177 -20.68261 -19.54572 -19.08116 -18.89693 -18.68502 -18.29078 -17.60219 -17.30170 -16.81282 -16.70071 -16.34728 -15.96216 -15.49882 -14.99636 -14.94672 -14.72352 -14.56948 -14.47510 -14.37916 -14.30712 -14.11118 -14.04077 -13.89202 -13.69765 -13.51855 -12.98670 -12.74509 -12.65408 -12.37763 -12.21722 -11.58750 -11.05177 -11.00900 -10.70581 -10.64312 -10.42313 -10.12547 -9.74521 -8.67979 -8.22452 -6.53688 -0.33243 0.37362 0.49194 0.77362 1.45876 1.46771 1.47218 1.57109 1.59041 2.03564 2.21229 2.39124 2.52377 2.93035 3.21149 3.62956 3.79573 3.86778 3.96121 4.07392 4.10944 4.19555 4.29401 4.42995 4.47290 4.64367 4.88760 5.08094 5.35863 5.51955 5.63373 6.51086 6.63199 6.74471 7.14905 7.29339 8.70349 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.002349 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.413791 B =11918.154426 C =12366.717616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.284 1.284 7 C -0.561 4.561 8 H 0.096 0.904 9 C 0.253 3.747 10 H 0.045 0.955 11 N -0.700 5.700 12 C 0.515 3.485 13 O -0.564 6.564 14 C -0.107 4.107 15 S -0.234 6.234 16 C -0.016 4.016 17 C 0.055 3.945 18 C -0.242 4.242 19 S 0.170 5.830 20 C 0.015 3.985 21 N -0.498 5.498 22 C 0.413 3.587 23 F -0.151 7.151 24 F -0.220 7.220 25 F -0.201 7.201 26 H 0.268 0.732 27 H 0.418 0.582 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.198 0.802 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.087 -20.773 -0.801 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.199 1.199 5 H -0.179 1.179 6 H -0.210 1.210 7 C -0.598 4.598 8 H 0.114 0.886 9 C 0.146 3.854 10 H 0.063 0.937 11 N -0.352 5.352 12 C 0.301 3.699 13 O -0.443 6.443 14 C -0.258 4.258 15 S -0.007 6.007 16 C -0.166 4.166 17 C -0.078 4.078 18 C -0.385 4.385 19 S 0.423 5.577 20 C -0.283 4.283 21 N -0.212 5.212 22 C 0.357 3.643 23 F -0.132 7.132 24 F -0.202 7.202 25 F -0.183 7.183 26 H 0.078 0.922 27 H 0.255 0.745 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.215 0.785 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 7.844 -21.470 -1.798 22.929 hybrid contribution 1.475 1.981 1.160 2.728 sum 9.318 -19.490 -0.638 21.612 Atomic orbital electron populations 1.70539 1.07574 1.28188 1.44663 1.26032 0.95889 1.03815 0.93462 0.85145 0.78614 0.77036 0.78455 1.19900 1.17898 1.20989 1.21240 0.94646 0.88172 1.55702 0.88643 1.19317 0.88941 0.87475 0.89706 0.93689 1.45802 1.17371 1.09518 1.62465 1.20515 0.88211 0.84050 0.77167 1.90738 1.23250 1.83197 1.47070 1.23435 1.01060 0.93212 1.08061 1.88139 1.22935 1.06921 1.82703 1.21893 0.98670 0.90859 1.05202 1.19545 1.02750 0.96972 0.88510 1.27232 1.06727 0.97797 1.06736 1.83891 1.54228 1.19755 0.99869 1.28922 1.00031 0.93210 1.06125 1.66080 1.21070 1.17728 1.16368 1.23303 0.80856 0.72357 0.87777 1.93377 1.69002 1.54552 1.96319 1.93069 1.81661 1.48400 1.97021 1.92987 1.74039 1.96147 1.55156 0.92175 0.74517 0.84062 0.83929 0.87756 0.85709 0.78519 0.75590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.65 9.50 21.45 0.20 -48.44 16 2 C 0.01 0.68 5.20 84.66 0.44 1.12 16 3 Si 0.98 40.14 29.54 68.60 2.03 42.16 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.56 -27.84 8.46 25.60 0.22 -27.63 16 8 H 0.10 4.29 7.74 -2.91 -0.02 4.27 16 9 C 0.25 12.56 2.21 44.24 0.10 12.65 16 10 H 0.05 2.61 7.58 -2.39 -0.02 2.59 16 11 N -0.70 -27.09 4.98 -446.10 -2.22 -29.31 16 12 C 0.51 19.61 7.38 87.66 0.65 20.26 16 13 O -0.56 -27.41 14.44 -3.04 -0.04 -27.46 16 14 C -0.11 -2.69 6.42 71.24 0.46 -2.24 16 15 S -0.23 -6.77 20.86 -56.49 -1.18 -7.95 16 16 C -0.02 -0.31 6.36 71.24 0.45 0.14 16 17 C 0.05 1.14 6.00 41.52 0.25 1.39 16 18 C -0.24 -3.97 11.13 66.78 0.74 -3.23 16 19 S 0.17 2.13 23.22 -56.49 -1.31 0.82 16 20 C 0.02 0.23 12.23 130.65 1.60 1.83 16 21 N -0.50 -11.13 10.53 -191.55 -2.02 -13.15 16 22 C 0.41 21.35 2.81 71.98 0.20 21.55 16 23 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16 24 F -0.22 -11.41 15.68 44.97 0.70 -10.70 16 25 F -0.20 -9.70 16.94 44.97 0.76 -8.93 16 26 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.42 12.87 8.54 -92.70 -0.79 12.08 16 28 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.12 1.65 8.12 -2.39 -0.02 1.63 16 32 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -73.03 328.96 3.00 -70.03 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.39 Total: 15.07 kcal Atomic # 6 Polarization: 20.75 SS G_CDS: 5.10 Total: 25.85 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -4.04 Total: -90.90 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.04 Total: -27.46 kcal Atomic # 9 Polarization: -29.68 SS G_CDS: 2.05 Total: -27.63 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.49 Total: -7.13 kcal Total: -73.03 3.00 -70.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.865 kcal (2) G-P(sol) polarization free energy of solvation -73.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds