Wall clock time and date at job start Sat Apr 11 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00041 * 3 2 1 5 5 H 1.48506 * 109.47180 * 29.99662 * 3 2 1 6 6 H 1.48492 * 109.47359 * 150.00295 * 3 2 1 7 7 C 1.37873 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00528 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47096 * 300.00043 * 9 7 2 11 11 O 1.42907 * 109.47219 * 59.99460 * 9 7 2 12 12 C 1.52997 * 109.47724 * 179.97438 * 9 7 2 13 13 N 1.46892 * 109.47496 * 180.02562 * 12 9 7 14 14 C 1.46902 * 111.00040 * 174.77464 * 13 12 9 15 15 H 1.08992 * 109.47223 * 326.35042 * 14 13 12 16 16 C 1.50705 * 109.47164 * 206.35209 * 14 13 12 17 17 C 1.38232 * 120.41230 * 319.72063 * 16 14 13 18 18 N 1.31850 * 120.78753 * 179.74977 * 17 16 14 19 19 C 1.31881 * 121.73384 * 0.53679 * 18 17 16 20 20 C 1.38285 * 120.74814 * 359.73027 * 19 18 17 21 21 Br 1.89104 * 120.42630 * 179.97438 * 20 19 18 22 22 C 1.38610 * 120.41522 * 139.99726 * 16 14 13 23 23 C 1.52998 * 109.47234 * 86.35559 * 14 13 12 24 24 C 1.53004 * 117.49369 * 252.76047 * 23 14 13 25 25 C 1.53004 * 117.49922 * 184.13860 * 23 14 13 26 26 H 0.97001 * 119.99527 * 0.02562 * 1 2 3 27 27 H 0.96697 * 113.99606 * 60.00158 * 11 9 7 28 28 H 1.08999 * 109.46900 * 300.00201 * 12 9 7 29 29 H 1.09003 * 109.47003 * 59.99330 * 12 9 7 30 30 H 1.00906 * 110.99948 * 298.72888 * 13 12 9 31 31 H 1.08001 * 119.60698 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.62650 * 179.74699 * 19 18 17 33 33 H 1.08000 * 120.79330 * 359.95982 * 22 16 14 34 34 H 1.08998 * 115.55487 * 38.46092 * 23 14 13 35 35 H 1.08998 * 117.50187 * 359.97438 * 24 23 14 36 36 H 1.09001 * 117.50042 * 145.02123 * 24 23 14 37 37 H 1.08997 * 117.49743 * 214.97459 * 25 23 14 38 38 H 1.09002 * 117.49502 * 359.97377 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2452 -3.6621 0.0005 13 7 1.5107 -4.9343 -0.0001 14 6 2.4302 -6.0730 -0.1250 15 1 3.2766 -5.7896 -0.7505 16 6 1.7073 -7.2357 -0.7548 17 6 0.4023 -7.5231 -0.4008 18 7 -0.2388 -8.5355 -0.9508 19 6 0.3350 -9.3162 -1.8455 20 6 1.6400 -9.0935 -2.2451 21 35 2.4540 -10.2191 -3.5283 22 6 2.3445 -8.0338 -1.6921 23 6 2.9337 -6.4766 1.2623 24 6 4.3836 -6.1373 1.6138 25 6 3.9828 -7.5878 1.3374 26 1 -0.4849 0.8401 -0.0004 27 1 0.9222 -2.5299 -1.9975 28 1 2.8718 -3.6044 -0.8894 29 1 2.8719 -3.6044 0.8905 30 1 0.9375 -5.0212 0.8258 31 1 -0.0995 -6.9083 0.3317 32 1 -0.2207 -10.1386 -2.2712 33 1 3.3649 -7.8353 -1.9851 34 1 2.1962 -6.4257 2.0633 35 1 4.9789 -5.6270 0.8566 36 1 4.6003 -5.8630 2.6462 37 1 3.9356 -8.2677 2.1881 38 1 4.3139 -8.0316 0.3985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930371640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:04 Heat of formation + Delta-G solvation = -8.136686 kcal Electronic energy + Delta-G solvation = -21186.070623 eV Core-core repulsion = 17881.537726 eV Total energy + Delta-G solvation = -3304.532897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47898 -39.26082 -37.74615 -35.44727 -34.18910 -34.13932 -33.16059 -30.67204 -29.86091 -27.48359 -25.34553 -24.56327 -23.50824 -23.17048 -22.36589 -21.25492 -18.99489 -18.23937 -17.59090 -17.09101 -16.71735 -16.63290 -15.99122 -15.82871 -15.45079 -15.06706 -14.96419 -14.66703 -14.23122 -14.17434 -13.79792 -13.27462 -13.07559 -12.82150 -12.71819 -12.66939 -12.44073 -12.39500 -12.27301 -12.02245 -11.46685 -11.41376 -11.14167 -10.98940 -10.69414 -10.60421 -10.49257 -10.06186 -9.81099 -9.19816 -8.10874 -6.36345 -0.12116 0.14068 0.47890 1.41837 1.42391 1.52755 2.39929 2.61249 2.83161 3.14739 3.18841 3.44154 3.71973 3.77017 3.81364 3.90087 4.03667 4.07238 4.18109 4.37076 4.40717 4.44438 4.55981 4.66478 4.73938 4.76452 4.85672 5.00476 5.08712 5.11825 5.22106 5.23026 5.49461 5.63878 5.79742 6.03540 6.19405 6.46690 6.77794 6.84464 7.37979 7.65455 8.93362 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.002723 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.274832 B =10280.537292 C =10764.640778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.585 4.585 8 H 0.060 0.940 9 C 0.234 3.766 10 H 0.018 0.982 11 O -0.571 6.571 12 C 0.061 3.939 13 N -0.675 5.675 14 C 0.167 3.833 15 H 0.088 0.912 16 C -0.098 4.098 17 C 0.125 3.875 18 N -0.496 5.496 19 C 0.116 3.884 20 C -0.147 4.147 21 Br -0.025 7.025 22 C -0.046 4.046 23 C -0.190 4.190 24 C -0.174 4.174 25 C -0.160 4.160 26 H 0.260 0.740 27 H 0.351 0.649 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.340 0.660 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.157 0.843 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -22.881 -3.168 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.623 4.623 8 H 0.078 0.922 9 C 0.176 3.824 10 H 0.036 0.964 11 O -0.374 6.374 12 C -0.068 4.068 13 N -0.304 5.304 14 C 0.056 3.944 15 H 0.106 0.894 16 C -0.101 4.101 17 C -0.032 4.032 18 N -0.205 5.205 19 C -0.043 4.043 20 C -0.228 4.228 21 Br 0.059 6.941 22 C -0.073 4.073 23 C -0.210 4.210 24 C -0.211 4.211 25 C -0.197 4.197 26 H 0.069 0.931 27 H 0.195 0.805 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.159 0.841 31 H 0.176 0.824 32 H 0.196 0.804 33 H 0.174 0.826 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.582 -23.364 -3.604 24.827 hybrid contribution 1.558 1.627 0.671 2.351 sum 9.140 -21.737 -2.934 23.762 Atomic orbital electron populations 1.70229 1.07650 1.27216 1.48602 1.25884 0.95428 1.02856 0.93553 0.85597 0.78787 0.79053 0.78349 1.19990 1.21142 1.18771 1.22051 0.93552 0.92775 1.53930 0.92167 1.19187 0.87910 0.90386 0.84937 0.96382 1.86514 1.38725 1.96458 1.15712 1.22437 0.95786 0.88880 0.99673 1.60507 1.22980 1.00789 1.46146 1.19931 0.93339 0.87624 0.93521 0.89410 1.20771 0.95529 0.96850 0.96995 1.22779 0.91491 0.92281 0.96644 1.67861 1.37628 1.05504 1.09473 1.23133 0.90810 0.97764 0.92573 1.22954 0.97953 1.00104 1.01830 1.96738 1.80807 1.63462 1.53080 1.21584 1.00734 0.91775 0.93239 1.23066 0.93549 1.06240 0.98111 1.23052 0.96176 0.98868 1.02982 1.22928 1.01787 0.91297 1.03723 0.93129 0.80507 0.91895 0.95003 0.84115 0.82431 0.80366 0.82586 0.87737 0.88713 0.88330 0.88011 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.58 12.84 21.45 0.28 -53.30 16 2 C 0.03 1.39 5.40 84.65 0.46 1.84 16 3 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.58 -31.21 8.76 25.60 0.22 -30.98 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.23 11.51 3.08 29.85 0.09 11.60 16 10 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 11 O -0.57 -29.59 12.59 -148.98 -1.88 -31.46 16 12 C 0.06 2.29 5.12 86.30 0.44 2.73 16 13 N -0.67 -21.15 5.54 -495.47 -2.74 -23.90 16 14 C 0.17 4.04 2.40 44.17 0.11 4.14 16 15 H 0.09 2.12 7.38 -2.39 -0.02 2.10 16 16 C -0.10 -2.32 4.72 -19.78 -0.09 -2.41 16 17 C 0.12 3.26 10.49 84.69 0.89 4.15 16 18 N -0.50 -13.14 10.36 -195.76 -2.03 -15.17 16 19 C 0.12 2.55 10.95 84.70 0.93 3.48 16 20 C -0.15 -2.99 6.25 22.40 0.14 -2.85 16 21 Br -0.03 -0.43 33.74 -20.37 -0.69 -1.11 16 22 C -0.05 -0.94 9.46 22.48 0.21 -0.73 16 23 C -0.19 -3.98 5.11 -10.79 -0.06 -4.03 16 24 C -0.17 -3.34 10.18 30.60 0.31 -3.03 16 25 C -0.16 -2.73 9.98 30.60 0.31 -2.42 16 26 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.35 16.43 9.04 -74.06 -0.67 15.76 16 28 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.34 10.55 7.84 -89.69 -0.70 9.85 16 31 H 0.16 4.08 7.32 -2.91 -0.02 4.06 16 32 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.10 2.25 7.97 -2.39 -0.02 2.23 16 35 H 0.09 1.84 8.07 -2.39 -0.02 1.82 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.56 8.02 -2.39 -0.02 1.55 16 Total: -1.00 -63.30 346.12 -1.36 -64.66 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.28 Total: 34.05 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 3.96 Total: -18.52 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -4.50 Total: -92.37 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.88 Total: -31.46 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.69 Total: -1.11 kcal Total: -63.30 -1.36 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930371640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.526 kcal (2) G-P(sol) polarization free energy of solvation -63.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds