Wall clock time and date at job start Sat Apr 11 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34240 * 126.28328 * 2 1 4 4 H 0.96999 * 125.73881 * 359.97438 * 3 2 1 5 5 N 1.39927 * 108.51662 * 179.97438 * 3 2 1 6 6 C 1.30510 * 108.89310 * 0.02562 * 5 3 2 7 7 Br 1.89108 * 125.99935 * 179.97438 * 6 5 3 8 8 C 1.38055 * 126.28286 * 179.68759 * 2 1 3 9 9 C 1.47394 * 126.42092 * 0.02562 * 8 2 1 10 10 O 1.21606 * 120.00267 * 89.99695 * 9 8 2 11 11 N 1.34785 * 119.99716 * 269.99735 * 9 8 2 12 12 C 1.46505 * 119.99682 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47146 * 89.99806 * 12 11 9 14 14 H 1.07997 * 120.00083 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99693 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99638 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00234 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47700 * 89.99080 * 17 15 13 19 19 H 1.48502 * 109.47301 * 209.99785 * 17 15 13 20 20 H 1.48506 * 109.46923 * 329.99110 * 17 15 13 21 21 C 1.46494 * 120.00271 * 359.97438 * 11 9 8 22 22 C 1.52995 * 109.46945 * 89.99695 * 21 11 9 23 23 C 1.47202 * 109.47289 * 180.02562 * 22 21 11 24 24 N 5.19109 * 84.27974 * 95.76509 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.02520 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02621 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02601 * 1 2 3 28 28 H 1.09001 * 109.46488 * 209.99775 * 12 11 9 29 29 H 1.08999 * 109.47151 * 329.99656 * 12 11 9 30 30 H 0.97005 * 119.99944 * 180.02562 * 16 15 13 31 31 H 1.08992 * 109.47330 * 210.00120 * 21 11 9 32 32 H 1.09001 * 109.46787 * 330.00113 * 21 11 9 33 33 H 1.08998 * 109.47803 * 300.00099 * 22 21 11 34 34 H 1.09001 * 109.47036 * 60.00571 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0020 2.0047 -0.0004 5 7 3.6340 0.6551 0.0006 6 6 3.6596 -0.6497 0.0004 7 35 5.2111 -1.7310 0.0003 8 6 2.3240 -1.1129 0.0061 9 6 1.8858 -2.5201 0.0132 10 8 1.7053 -3.1061 -1.0369 11 7 1.6851 -3.1575 1.1838 12 6 1.2500 -4.5564 1.1909 13 6 2.4575 -5.4580 1.1962 14 1 3.4498 -5.0316 1.1949 15 6 2.2955 -6.8272 1.2038 16 7 3.3494 -7.6140 1.2089 17 14 0.5793 -7.5647 1.2068 18 1 0.1253 -7.7678 -0.1924 19 1 0.6027 -8.8702 1.9142 20 1 -0.3546 -6.6422 1.9012 21 6 1.9030 -2.4517 2.4489 22 6 0.6018 -1.7766 2.8869 23 6 0.8208 -1.0669 4.1578 24 7 0.9896 -0.5188 5.1391 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3633 -0.8898 0.5143 28 1 0.6511 -4.7460 2.0816 29 1 0.6519 -4.7554 0.3016 30 1 3.2354 -8.5773 1.2139 31 1 2.2181 -3.1631 3.2122 32 1 2.6770 -1.6961 2.3147 33 1 0.2866 -1.0652 2.1236 34 1 -0.1723 -2.5322 3.0211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930482983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:07 Heat of formation + Delta-G solvation = 73.486016 kcal Electronic energy + Delta-G solvation = -21653.499879 eV Core-core repulsion = 18248.966065 eV Total energy + Delta-G solvation = -3404.533814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63570 -38.92345 -36.90046 -35.28317 -33.37412 -32.84933 -31.82016 -30.99513 -30.22028 -28.38505 -27.17097 -24.18148 -23.25376 -21.47811 -21.07242 -18.66901 -17.94019 -17.35675 -16.80683 -16.47920 -15.79096 -15.10595 -14.80682 -14.53218 -14.35368 -13.97168 -13.78378 -13.33362 -13.26546 -13.00141 -12.64045 -12.49052 -12.42140 -12.26026 -11.81027 -11.60412 -11.37479 -11.23954 -11.00062 -10.86842 -10.56433 -10.21584 -10.19016 -9.58459 -9.38598 -9.32392 -8.72414 -8.58137 -7.90979 -6.07416 -4.06585 1.19267 1.41857 2.11217 2.65196 2.70066 2.73963 3.08448 3.28254 3.33120 3.36388 3.60477 4.10980 4.33749 4.39113 4.62478 4.84374 4.94599 5.08516 5.13724 5.18482 5.25491 5.30541 5.55019 5.58743 5.74705 5.84415 6.05727 6.60296 6.84063 6.86878 7.15526 7.19823 7.50591 7.58593 8.05801 8.45782 8.80908 8.99732 9.51831 11.05809 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.005899 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.741696 B = 4745.549747 C = 5976.206510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 N -0.452 5.452 4 H 0.444 0.556 5 N -0.262 5.262 6 C 0.106 3.894 7 Br 0.057 6.943 8 C -0.240 4.240 9 C 0.589 3.411 10 O -0.516 6.516 11 N -0.580 5.580 12 C 0.214 3.786 13 C -0.529 4.529 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.872 3.128 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.265 1.265 21 C 0.120 3.880 22 C -0.056 4.056 23 C 0.216 3.784 24 N -0.441 5.441 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 17.249 -1.237 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.009 4.009 3 N -0.162 5.162 4 H 0.289 0.711 5 N -0.087 5.087 6 C -0.140 4.140 7 Br 0.138 6.862 8 C -0.256 4.256 9 C 0.373 3.627 10 O -0.391 6.391 11 N -0.311 5.311 12 C 0.094 3.906 13 C -0.568 4.568 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.699 3.301 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.006 4.006 22 C -0.097 4.097 23 C -0.103 4.103 24 N -0.118 5.118 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.445 18.159 -0.338 18.486 hybrid contribution -1.642 -0.650 -0.369 1.804 sum -5.087 17.509 -0.707 18.247 Atomic orbital electron populations 1.20727 0.86045 1.04595 1.04853 1.21369 0.94644 0.86235 0.98608 1.45963 1.03579 1.08471 1.58139 0.71056 1.77247 0.96323 1.10984 1.24166 1.24014 0.93826 0.92510 1.03609 1.96932 1.29788 1.62016 1.97449 1.20114 0.91076 0.95140 1.19297 1.17053 0.77815 0.83654 0.84173 1.90793 1.50217 1.66940 1.31127 1.47794 1.66209 1.13474 1.03579 1.19784 0.96685 0.76380 0.97711 1.21326 0.93571 0.90497 1.51380 0.90197 1.24839 0.96530 0.96957 0.94530 1.69893 1.29055 1.04051 1.50307 0.86924 0.85282 0.79063 0.78823 1.19933 1.21206 1.18978 1.21263 0.93912 0.97184 0.88245 1.20052 1.02482 0.99506 0.87707 1.29047 0.93270 0.93413 0.94521 1.81238 1.08557 1.10245 1.11769 0.88764 0.90078 0.88585 0.94808 0.94113 0.92588 0.88301 0.90600 0.87793 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.38 36.01 0.34 -0.38 16 2 C 0.12 1.33 6.81 -81.60 -0.56 0.78 16 3 N -0.45 -4.47 7.28 33.86 0.25 -4.22 16 4 H 0.44 2.56 8.96 -182.73 -1.64 0.92 16 5 N -0.26 -3.61 12.64 32.15 0.41 -3.20 16 6 C 0.11 1.65 7.46 -16.92 -0.13 1.53 16 7 Br 0.06 0.93 33.93 -68.01 -2.31 -1.38 16 8 C -0.24 -3.64 4.10 -105.05 -0.43 -4.07 16 9 C 0.59 10.94 6.97 -12.53 -0.09 10.85 16 10 O -0.52 -11.83 16.69 5.27 0.09 -11.74 16 11 N -0.58 -10.34 2.46 -176.35 -0.43 -10.78 16 12 C 0.21 4.60 4.23 -5.19 -0.02 4.58 16 13 C -0.53 -14.09 9.94 -34.44 -0.34 -14.43 16 14 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 17 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 21 C 0.12 1.68 5.18 -4.05 -0.02 1.66 16 22 C -0.06 -0.57 6.03 -29.52 -0.18 -0.74 16 23 C 0.22 2.56 15.44 -20.74 -0.32 2.24 16 24 N -0.44 -6.37 18.54 42.18 0.78 -5.59 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.69 6.15 -51.93 -0.32 0.37 16 28 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.08 1.05 6.65 -51.93 -0.35 0.71 16 33 H 0.10 0.85 4.52 -51.93 -0.23 0.62 16 34 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -35.06 323.83 -6.62 -41.68 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.54 Total: -3.36 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.84 Total: 3.96 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 1.78 Total: -49.60 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 35 Polarization: 0.93 SS G_CDS: -2.31 Total: -1.38 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.06 -6.62 -41.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930482983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.167 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds