Wall clock time and date at job start Sat Apr 11 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34240 * 126.28328 * 2 1 4 4 H 0.96999 * 125.73881 * 359.97438 * 3 2 1 5 5 N 1.39927 * 108.51662 * 179.97438 * 3 2 1 6 6 C 1.30510 * 108.89310 * 0.02562 * 5 3 2 7 7 Br 1.89108 * 125.99935 * 179.97438 * 6 5 3 8 8 C 1.38055 * 126.28286 * 179.68759 * 2 1 3 9 9 C 1.47394 * 126.42092 * 0.02562 * 8 2 1 10 10 O 1.21606 * 120.00267 * 89.99695 * 9 8 2 11 11 N 1.34785 * 119.99716 * 269.99735 * 9 8 2 12 12 C 1.46505 * 119.99682 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47146 * 89.99806 * 12 11 9 14 14 H 1.07997 * 120.00083 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99693 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99638 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00234 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47700 * 89.99080 * 17 15 13 19 19 H 1.48502 * 109.47301 * 209.99785 * 17 15 13 20 20 H 1.48506 * 109.46923 * 329.99110 * 17 15 13 21 21 C 1.46494 * 120.00271 * 359.97438 * 11 9 8 22 22 C 1.52995 * 109.46945 * 89.99695 * 21 11 9 23 23 C 1.47202 * 109.47289 * 180.02562 * 22 21 11 24 24 N 5.19109 * 84.27974 * 95.76509 * 2 1 3 25 25 H 1.09002 * 109.47152 * 90.02520 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02621 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02601 * 1 2 3 28 28 H 1.09001 * 109.46488 * 209.99775 * 12 11 9 29 29 H 1.08999 * 109.47151 * 329.99656 * 12 11 9 30 30 H 0.97005 * 119.99944 * 180.02562 * 16 15 13 31 31 H 1.08992 * 109.47330 * 210.00120 * 21 11 9 32 32 H 1.09001 * 109.46787 * 330.00113 * 21 11 9 33 33 H 1.08998 * 109.47803 * 300.00099 * 22 21 11 34 34 H 1.09001 * 109.47036 * 60.00571 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0020 2.0047 -0.0004 5 7 3.6340 0.6551 0.0006 6 6 3.6596 -0.6497 0.0004 7 35 5.2111 -1.7310 0.0003 8 6 2.3240 -1.1129 0.0061 9 6 1.8858 -2.5201 0.0132 10 8 1.7053 -3.1061 -1.0369 11 7 1.6851 -3.1575 1.1838 12 6 1.2500 -4.5564 1.1909 13 6 2.4575 -5.4580 1.1962 14 1 3.4498 -5.0316 1.1949 15 6 2.2955 -6.8272 1.2038 16 7 3.3494 -7.6140 1.2089 17 14 0.5793 -7.5647 1.2068 18 1 0.1253 -7.7678 -0.1924 19 1 0.6027 -8.8702 1.9142 20 1 -0.3546 -6.6422 1.9012 21 6 1.9030 -2.4517 2.4489 22 6 0.6018 -1.7766 2.8869 23 6 0.8208 -1.0669 4.1578 24 7 0.9896 -0.5188 5.1391 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3633 -0.8898 0.5143 28 1 0.6511 -4.7460 2.0816 29 1 0.6519 -4.7554 0.3016 30 1 3.2354 -8.5773 1.2139 31 1 2.2181 -3.1631 3.2122 32 1 2.6770 -1.6961 2.3147 33 1 0.2866 -1.0652 2.1236 34 1 -0.1723 -2.5322 3.0211 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930482983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:06 Heat of formation + Delta-G solvation = 47.898629 kcal Electronic energy + Delta-G solvation = -21654.609431 eV Core-core repulsion = 18248.966065 eV Total energy + Delta-G solvation = -3405.643366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.67175 -40.32499 -37.99656 -36.67495 -34.75358 -34.32473 -32.96587 -32.22848 -31.39457 -29.83729 -28.24764 -25.34967 -24.89887 -22.52613 -22.39988 -19.88932 -19.16934 -18.68925 -18.33088 -17.73190 -17.07730 -16.26655 -16.03779 -15.79340 -15.57669 -15.34692 -14.95374 -14.60140 -14.30864 -14.03092 -13.91440 -13.72139 -13.57854 -13.30166 -13.20462 -12.97481 -12.70051 -12.37061 -12.34453 -12.30912 -11.93518 -11.83506 -11.59645 -11.42047 -10.85012 -10.68711 -10.44570 -9.79090 -9.45610 -8.18602 -6.22936 0.06906 0.47140 0.97713 1.44931 1.49472 1.56289 1.58935 1.71435 1.81476 1.89629 2.35941 2.44387 3.08478 3.17990 3.50532 3.72265 3.91916 4.00940 4.06240 4.19078 4.42752 4.65605 4.68403 4.77677 4.83793 4.91481 5.01024 5.13250 5.19038 5.59297 5.66915 6.00058 6.27754 6.38091 6.57514 6.65179 6.82110 7.31485 7.45435 8.98348 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.005899 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.741696 B = 4745.549747 C = 5976.206510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.159 3.841 3 N -0.426 5.426 4 H 0.466 0.534 5 N -0.276 5.276 6 C 0.091 3.909 7 Br 0.030 6.970 8 C -0.277 4.277 9 C 0.595 3.405 10 O -0.570 6.570 11 N -0.579 5.579 12 C 0.221 3.779 13 C -0.531 4.531 14 H 0.031 0.969 15 C 0.008 3.992 16 N -0.951 5.951 17 Si 0.941 3.059 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.220 1.220 21 C 0.116 3.884 22 C -0.042 4.042 23 C 0.242 3.758 24 N -0.485 5.485 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 19.531 -0.680 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.025 3.975 3 N -0.138 5.138 4 H 0.316 0.684 5 N -0.101 5.101 6 C -0.154 4.154 7 Br 0.112 6.888 8 C -0.294 4.294 9 C 0.381 3.619 10 O -0.448 6.448 11 N -0.308 5.308 12 C 0.099 3.901 13 C -0.569 4.569 14 H 0.050 0.950 15 C -0.189 4.189 16 N -0.592 5.592 17 Si 0.764 3.236 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.142 1.142 21 C -0.009 4.009 22 C -0.082 4.082 23 C -0.075 4.075 24 N -0.163 5.163 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.185 20.533 0.265 21.755 hybrid contribution -0.402 -1.239 -0.583 1.427 sum -7.587 19.293 -0.318 20.734 Atomic orbital electron populations 1.21045 0.82476 1.06856 1.06386 1.21861 0.96244 0.84700 0.94697 1.45968 1.02196 1.09565 1.56077 0.68404 1.77184 0.98494 1.09927 1.24511 1.23870 0.93252 0.93079 1.05158 1.96892 1.31338 1.63013 1.97583 1.19848 0.91659 0.94366 1.23521 1.17419 0.76360 0.84772 0.83309 1.90755 1.52554 1.68589 1.32940 1.47719 1.65760 1.12342 1.04986 1.19542 0.94476 0.77442 0.98602 1.21636 0.93640 0.91530 1.50139 0.95032 1.25848 1.01293 0.97545 0.94224 1.70081 1.32119 1.04336 1.52640 0.85816 0.80205 0.78662 0.78896 1.20385 1.21414 1.14249 1.21364 0.96341 0.96916 0.86242 1.20014 1.00573 1.00341 0.87314 1.29159 0.91936 0.92295 0.94111 1.81283 1.09821 1.11963 1.13236 0.87485 0.85691 0.88373 0.91466 0.94847 0.92745 0.89313 0.90718 0.85147 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.38 71.24 0.67 -0.25 16 2 C 0.16 2.86 6.81 42.15 0.29 3.15 16 3 N -0.43 -6.90 7.28 -46.80 -0.34 -7.24 16 4 H 0.47 3.23 8.96 -213.43 -1.91 1.32 16 5 N -0.28 -7.14 12.64 -52.20 -0.66 -7.80 16 6 C 0.09 2.82 7.46 85.66 0.64 3.45 16 7 Br 0.03 1.03 33.93 -20.37 -0.69 0.34 16 8 C -0.28 -8.02 4.10 -20.14 -0.08 -8.11 16 9 C 0.59 21.79 6.97 86.65 0.60 22.39 16 10 O -0.57 -26.45 16.69 -4.05 -0.07 -26.52 16 11 N -0.58 -20.03 2.46 -830.10 -2.04 -22.07 16 12 C 0.22 9.20 4.23 85.63 0.36 9.56 16 13 C -0.53 -28.96 9.94 25.60 0.25 -28.71 16 14 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 15 C 0.01 0.45 5.47 84.66 0.46 0.91 16 16 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 17 Si 0.94 41.14 27.47 68.60 1.88 43.03 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.22 -7.98 6.54 99.48 0.65 -7.33 16 21 C 0.12 3.05 5.18 86.38 0.45 3.50 16 22 C -0.04 -0.68 6.03 28.79 0.17 -0.50 16 23 C 0.24 4.99 15.44 89.44 1.38 6.37 16 24 N -0.49 -12.95 18.54 20.01 0.37 -12.58 16 25 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.10 0.88 6.15 -2.38 -0.01 0.87 16 28 H 0.07 2.38 7.13 -2.39 -0.02 2.36 16 29 H 0.03 1.47 6.85 -2.39 -0.02 1.46 16 30 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 31 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 32 H 0.07 2.00 6.65 -2.39 -0.02 1.98 16 33 H 0.13 1.47 4.52 -2.39 -0.01 1.46 16 34 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -82.62 323.83 3.16 -79.46 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -0.79 Total: 0.11 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.20 Total: 11.77 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -2.37 Total: -108.19 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.03 kcal Atomic # 35 Polarization: 1.03 SS G_CDS: -0.69 Total: 0.34 kcal Total: -82.62 3.16 -79.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930482983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.363 kcal (2) G-P(sol) polarization free energy of solvation -82.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds