Wall clock time and date at job start Sat Apr 11 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48497 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46690 * 300.00148 * 3 2 1 6 6 H 1.48494 * 109.46935 * 59.99721 * 3 2 1 7 7 C 1.38815 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00498 * 196.73784 * 7 2 1 9 9 N 1.36936 * 119.99818 * 16.72635 * 7 2 1 10 10 C 1.46965 * 120.59465 * 27.85798 * 9 7 2 11 11 C 1.53370 * 108.63718 * 124.74956 * 10 9 7 12 12 N 1.46963 * 108.63680 * 49.42443 * 11 10 9 13 13 C 1.34773 * 120.59332 * 124.75104 * 12 11 10 14 14 O 1.21473 * 120.00159 * 5.54101 * 13 12 11 15 15 C 1.48489 * 120.00054 * 185.53673 * 13 12 11 16 16 N 1.32485 * 119.16767 * 40.96251 * 15 13 12 17 17 C 1.32085 * 120.77612 * 179.71607 * 16 15 13 18 18 C 1.38924 * 119.14993 * 0.54885 * 17 16 15 19 19 Br 1.89099 * 120.75695 * 179.75017 * 18 17 16 20 20 C 1.38916 * 118.48263 * 359.72495 * 18 17 16 21 21 N 1.32081 * 119.15189 * 0.02562 * 20 18 17 22 22 C 1.46965 * 118.80936 * 304.77650 * 12 11 10 23 23 C 1.46963 * 120.59598 * 207.83074 * 9 7 2 24 24 H 0.96997 * 120.00228 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.61112 * 5.00159 * 10 9 7 26 26 H 1.09004 * 109.75478 * 244.57955 * 10 9 7 27 27 H 1.09006 * 109.60795 * 169.17287 * 11 10 9 28 28 H 1.09005 * 109.60453 * 289.67943 * 11 10 9 29 29 H 1.07995 * 120.42408 * 180.25190 * 17 16 15 30 30 H 1.08001 * 120.42367 * 180.02562 * 20 18 17 31 31 H 1.08997 * 109.60828 * 295.47941 * 22 12 11 32 32 H 1.09004 * 109.74906 * 175.05223 * 22 12 11 33 33 H 1.08999 * 109.60739 * 354.99894 * 23 9 7 34 34 H 1.09011 * 109.60890 * 115.50662 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0559 -1.2221 0.2688 9 7 1.3691 -2.3628 -0.3424 10 6 0.2180 -2.3404 -1.2559 11 6 0.5033 -3.2886 -2.4271 12 7 0.9541 -4.5791 -1.8875 13 6 0.3230 -5.7214 -2.2240 14 8 -0.5619 -5.7040 -3.0560 15 6 0.7095 -7.0012 -1.5778 16 7 0.9697 -7.0159 -0.2788 17 6 1.3108 -8.1376 0.3295 18 6 1.4061 -9.3080 -0.4128 19 35 1.8977 -10.9379 0.4103 20 6 1.1315 -9.2537 -1.7735 21 7 0.7911 -8.0984 -2.3156 22 6 2.1052 -4.6015 -0.9740 23 6 1.8199 -3.6533 0.1972 24 1 -0.4850 0.8400 0.0004 25 1 0.0694 -1.3283 -1.6323 26 1 -0.6774 -2.6695 -0.7285 27 1 -0.4062 -3.4335 -3.0103 28 1 1.2828 -2.8641 -3.0598 29 1 1.5177 -8.1438 1.3894 30 1 1.1955 -10.1448 -2.3803 31 1 2.9987 -4.2706 -1.5033 32 1 2.2567 -5.6131 -0.5973 33 1 2.7293 -3.5083 0.7804 34 1 1.0404 -4.0777 0.8300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933237458.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:16 Heat of formation + Delta-G solvation = 69.130791 kcal Electronic energy + Delta-G solvation = -21408.756344 eV Core-core repulsion = 18004.033674 eV Total energy + Delta-G solvation = -3404.722671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.65114 -39.33662 -36.90404 -34.51447 -33.87971 -33.54385 -31.23191 -30.76949 -29.92648 -27.19464 -25.23186 -25.16780 -23.55626 -22.80940 -21.16090 -19.36416 -18.28073 -17.80895 -16.72898 -16.22543 -15.85937 -15.13400 -15.00656 -14.79485 -14.66409 -14.07264 -13.67050 -13.54495 -13.40478 -13.29950 -12.48129 -12.00849 -11.80477 -11.62997 -11.31485 -11.19919 -11.10599 -10.82193 -10.72719 -10.54748 -10.25989 -10.02342 -9.93833 -9.76039 -9.65863 -9.51023 -8.62676 -8.35688 -6.73489 -5.85700 -3.30511 -0.03892 0.58667 0.89853 2.50367 2.78978 3.27836 3.33699 3.41913 3.43658 3.80100 3.92579 3.95512 4.27979 4.43841 4.60519 5.13901 5.27576 5.32400 5.61148 5.74318 5.77793 5.94489 6.05703 6.24569 6.31338 6.36517 6.47039 6.69467 6.85920 7.19667 7.42375 7.53433 7.67980 7.72341 8.24565 8.35075 9.11098 9.73880 10.30279 11.21899 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.002758 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.407392 B =10149.783020 C =10921.733958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.158 3.842 11 C 0.088 3.912 12 N -0.569 5.569 13 C 0.578 3.422 14 O -0.520 6.520 15 C 0.315 3.685 16 N -0.470 5.470 17 C 0.180 3.820 18 C -0.201 4.201 19 Br -0.011 7.011 20 C 0.181 3.819 21 N -0.469 5.469 22 C 0.084 3.916 23 C 0.137 3.863 24 H 0.255 0.745 25 H 0.105 0.895 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -22.910 0.689 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.315 5.315 10 C 0.031 3.969 11 C -0.035 4.035 12 N -0.301 5.301 13 C 0.360 3.640 14 O -0.395 6.395 15 C 0.046 3.954 16 N -0.187 5.187 17 C 0.012 3.988 18 C -0.285 4.285 19 Br 0.073 6.927 20 C 0.012 3.988 21 N -0.184 5.184 22 C -0.041 4.041 23 C 0.010 3.990 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.044 0.956 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.202 0.798 30 H 0.200 0.800 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.482 -22.399 0.092 22.843 hybrid contribution 0.583 0.255 0.408 0.756 sum 5.065 -22.144 0.501 22.721 Atomic orbital electron populations 1.70006 1.05296 1.25645 1.53576 1.25074 0.95314 0.98544 1.00638 0.86199 0.79317 0.83753 0.77333 1.20224 1.21475 1.21685 1.19240 0.92591 0.84562 1.42110 0.91375 1.44041 1.35104 1.01641 1.50709 1.21241 0.89039 0.98631 0.87981 1.22728 1.00060 0.81715 0.98984 1.47922 1.30918 1.06029 1.45221 1.17215 0.83134 0.81518 0.82099 1.90786 1.31460 1.84965 1.32280 1.23357 0.91020 0.94285 0.86787 1.68794 1.10975 1.28293 1.10623 1.23532 0.88831 0.85442 1.01030 1.24035 1.09845 0.95994 0.98630 1.96811 1.90845 1.24846 1.80230 1.23449 0.88418 0.96352 0.90557 1.68460 1.12231 0.98351 1.39369 1.22664 0.87078 1.01648 0.92671 1.21204 0.98611 0.86806 0.92356 0.93466 0.87719 0.95646 0.89794 0.91460 0.79751 0.79960 0.91840 0.89855 0.91621 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.12 55.49 0.62 -24.80 16 2 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 3 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -6.72 9.58 -15.06 -0.14 -6.86 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.32 2.97 -172.03 -0.51 -14.83 16 10 C 0.16 3.70 5.51 -3.60 -0.02 3.68 16 11 C 0.09 1.76 6.58 -3.60 -0.02 1.73 16 12 N -0.57 -10.74 2.95 -173.36 -0.51 -11.25 16 13 C 0.58 10.96 7.56 -12.04 -0.09 10.87 16 14 O -0.52 -11.19 16.50 5.39 0.09 -11.10 16 15 C 0.32 5.00 6.68 -157.07 -1.05 3.95 16 16 N -0.47 -6.55 7.65 -11.10 -0.08 -6.63 16 17 C 0.18 1.82 11.09 -17.19 -0.19 1.63 16 18 C -0.20 -1.82 6.28 -39.08 -0.25 -2.06 16 19 Br -0.01 -0.08 33.77 -68.01 -2.30 -2.37 16 20 C 0.18 1.83 11.09 -17.19 -0.19 1.64 16 21 N -0.47 -6.73 10.32 -11.10 -0.11 -6.84 16 22 C 0.08 1.44 6.24 -3.60 -0.02 1.42 16 23 C 0.14 2.74 6.67 -3.60 -0.02 2.72 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.10 2.70 5.93 -51.93 -0.31 2.39 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.65 7.02 -51.93 -0.36 1.29 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.19 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.27 4.72 -51.93 -0.24 1.03 16 33 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 34 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -31.32 308.91 -8.69 -40.00 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.41 Total: -1.52 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: -2.09 Total: 18.71 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.60 Total: -64.36 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.30 Total: -2.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.32 -8.69 -40.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933237458.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.135 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds