Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00300 * 2 1 4 4 H 1.48508 * 109.46901 * 271.76360 * 3 2 1 5 5 H 1.48498 * 109.47048 * 31.76255 * 3 2 1 6 6 H 1.48498 * 109.47137 * 151.76841 * 3 2 1 7 7 C 1.37879 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00424 * 359.60917 * 7 2 1 9 9 C 1.50707 * 119.99995 * 179.60115 * 7 2 1 10 10 C 1.52999 * 115.54504 * 88.32455 * 9 7 2 11 11 N 1.46501 * 109.47271 * 56.06872 * 10 9 7 12 12 C 1.34777 * 119.99997 * 185.06093 * 11 10 9 13 13 O 1.21519 * 119.99911 * 5.02830 * 12 11 10 14 14 C 1.48103 * 119.99848 * 185.03088 * 12 11 10 15 15 C 1.39647 * 120.90228 * 354.76422 * 14 12 11 16 16 C 1.38811 * 118.96282 * 179.97438 * 15 14 12 17 17 O 1.35701 * 119.60441 * 179.97438 * 16 15 14 18 18 N 1.32204 * 120.78288 * 0.27026 * 16 15 14 19 19 C 1.31855 * 121.99385 * 359.43377 * 18 16 15 20 20 C 1.38154 * 120.95686 * 0.56857 * 19 18 16 21 21 Br 1.89095 * 120.44853 * 179.69724 * 20 19 18 22 22 C 1.53000 * 117.50001 * 233.99420 * 9 7 2 23 23 C 1.52999 * 117.49785 * 302.65555 * 9 7 2 24 24 H 0.96996 * 120.00005 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47209 * 296.06697 * 10 9 7 26 26 H 1.09005 * 109.46734 * 176.07064 * 10 9 7 27 27 H 0.96995 * 119.99912 * 5.06817 * 11 10 9 28 28 H 1.07996 * 120.51790 * 359.95242 * 15 14 12 29 29 H 0.96707 * 113.99791 * 90.00327 * 17 16 15 30 30 H 1.07999 * 119.52363 * 180.29120 * 19 18 16 31 31 H 1.09000 * 117.50009 * 215.00142 * 22 9 7 32 32 H 1.08994 * 117.49627 * 0.02562 * 22 9 7 33 33 H 1.08997 * 117.49808 * 359.97438 * 23 9 7 34 34 H 1.09006 * 117.49387 * 144.97110 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4594 2.0679 -1.3995 5 1 1.4658 2.6416 0.7370 6 1 3.5649 1.4295 0.6623 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0073 9 6 3.5115 -1.1942 -0.0086 10 6 4.1795 -1.1485 1.3671 11 7 3.6993 -2.2682 2.1807 12 6 4.0748 -2.3735 3.4708 13 8 4.7362 -1.4932 3.9849 14 6 3.6814 -3.5622 4.2619 15 6 2.8323 -4.5321 3.7248 16 6 2.4900 -5.6304 4.5017 17 8 1.6654 -6.5805 3.9930 18 7 2.9532 -5.7587 5.7333 19 6 3.7611 -4.8669 6.2723 20 6 4.1513 -3.7441 5.5682 21 35 5.3037 -2.4700 6.3584 22 6 4.2113 -1.9964 -1.1075 23 6 4.2110 -0.4665 -1.1583 24 1 -0.4850 0.8400 -0.0004 25 1 3.9318 -0.2085 1.8603 26 1 5.2606 -1.2227 1.2486 27 1 3.1113 -2.9338 1.7909 28 1 2.4477 -4.4292 2.7209 29 1 2.1259 -7.2954 3.5325 30 1 4.1195 -5.0140 7.2804 31 1 5.1477 -2.4915 -0.8505 32 1 3.5817 -2.5237 -1.8241 33 1 3.5813 0.0120 -1.9083 34 1 5.1471 0.0453 -0.9345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935781511.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = 6.545548 kcal Electronic energy + Delta-G solvation = -21119.888879 eV Core-core repulsion = 17680.159557 eV Total energy + Delta-G solvation = -3439.729322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92132 -39.16567 -37.40798 -36.99585 -33.87131 -33.04358 -32.21001 -31.77900 -29.07788 -27.11076 -25.58112 -24.48615 -23.16274 -21.84312 -20.66446 -19.59307 -18.71711 -17.40887 -17.24115 -16.39768 -15.81305 -15.60516 -15.24733 -15.03084 -14.64819 -14.57370 -13.89044 -13.58681 -13.09629 -12.88120 -12.57637 -12.48302 -12.16858 -12.08154 -11.24570 -11.16966 -10.89596 -10.77915 -10.56351 -10.27053 -10.06676 -10.05589 -9.71646 -9.27825 -8.98111 -8.94840 -8.73390 -8.65328 -8.41484 -6.23003 -4.29043 0.34533 0.57357 1.47375 2.80209 3.22778 3.25694 3.34611 3.34997 3.40694 3.56210 4.24249 4.33483 4.51171 4.60284 4.78610 4.86837 5.06319 5.23765 5.32633 5.51154 5.59884 5.90773 5.94317 5.97906 6.10901 6.34111 6.38113 6.61476 6.83461 6.94519 6.99040 7.15587 7.46712 7.59077 7.90558 8.31317 8.47252 8.75392 9.39714 10.87949 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.013569 B = 0.004287 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.042531 B = 6529.632667 C = 7584.843699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.495 4.495 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.155 3.845 11 N -0.686 5.686 12 C 0.537 3.463 13 O -0.513 6.513 14 C -0.038 4.038 15 C -0.146 4.146 16 C 0.322 3.678 17 O -0.474 6.474 18 N -0.485 5.485 19 C 0.151 3.849 20 C -0.118 4.118 21 Br 0.006 6.994 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.266 0.734 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.404 0.596 28 H 0.159 0.841 29 H 0.405 0.595 30 H 0.174 0.826 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 -10.581 10.091 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.122 4.122 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.096 0.904 9 C -0.019 4.019 10 C 0.032 3.968 11 N -0.336 5.336 12 C 0.321 3.679 13 O -0.390 6.390 14 C -0.051 4.051 15 C -0.169 4.169 16 C 0.143 3.857 17 O -0.282 6.282 18 N -0.205 5.205 19 C -0.009 4.009 20 C -0.201 4.201 21 Br 0.092 6.908 22 C -0.216 4.216 23 C -0.229 4.229 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.241 0.759 28 H 0.176 0.824 29 H 0.263 0.737 30 H 0.191 0.809 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.310 -9.738 11.371 18.177 hybrid contribution 0.167 0.723 -1.193 1.405 sum 10.477 -9.015 10.178 17.165 Atomic orbital electron populations 1.69875 1.06394 1.27394 1.49128 1.24971 0.94587 0.99190 0.93436 0.86860 0.80780 0.83300 0.78376 1.20418 1.22027 1.18060 1.20139 0.85909 0.94519 1.52612 0.90374 1.19623 0.95403 1.00983 0.85914 1.21203 0.95481 0.88698 0.91386 1.45764 1.49203 1.28820 1.09815 1.17945 0.81636 0.85816 0.82519 1.90909 1.38867 1.39723 1.69469 1.20323 0.95810 0.95476 0.93510 1.22482 0.97611 0.94380 1.02397 1.19081 0.89033 0.89562 0.88034 1.84830 1.32335 1.36939 1.74061 1.67151 1.09786 1.30755 1.12763 1.22558 0.91576 0.87201 0.99521 1.23145 1.02496 0.98248 0.96231 1.96801 1.60009 1.55100 1.78879 1.22895 1.01055 0.93234 1.04464 1.22935 1.01454 0.94777 1.03749 0.92377 0.91189 0.93432 0.75950 0.82381 0.73705 0.80864 0.90855 0.89334 0.89096 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 20.94 24.84 -169.99 -4.22 16.72 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -5.83 5.66 56.52 0.32 -5.51 16 7 C -0.49 -12.43 8.89 -34.44 -0.31 -12.74 16 8 H 0.08 2.10 8.06 -52.48 -0.42 1.68 16 9 C -0.02 -0.38 0.93 -155.66 -0.14 -0.52 16 10 C 0.16 3.07 5.35 -4.04 -0.02 3.05 16 11 N -0.69 -12.15 5.32 -61.17 -0.33 -12.47 16 12 C 0.54 9.38 7.77 -12.21 -0.09 9.29 16 13 O -0.51 -10.09 13.69 5.35 0.07 -10.02 16 14 C -0.04 -0.56 5.91 -104.66 -0.62 -1.18 16 15 C -0.15 -1.86 9.54 -38.84 -0.37 -2.23 16 16 C 0.32 3.93 7.74 -17.18 -0.13 3.80 16 17 O -0.47 -4.94 13.56 -18.81 -0.25 -5.20 16 18 N -0.48 -6.08 10.36 -13.36 -0.14 -6.22 16 19 C 0.15 1.73 10.93 -17.57 -0.19 1.54 16 20 C -0.12 -1.58 6.28 -38.95 -0.24 -1.83 16 21 Br 0.01 0.09 30.62 -68.01 -2.08 -1.99 16 22 C -0.18 -3.23 9.93 -26.69 -0.27 -3.49 16 23 C -0.19 -3.74 7.49 -26.69 -0.20 -3.94 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.07 1.55 6.65 -51.93 -0.35 1.20 16 26 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 27 H 0.40 6.62 6.34 -40.82 -0.26 6.37 16 28 H 0.16 1.83 6.55 -52.49 -0.34 1.48 16 29 H 0.40 1.98 9.06 45.56 0.41 2.39 16 30 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.09 1.88 7.07 -51.93 -0.37 1.51 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -31.27 311.06 -6.83 -38.09 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.65 Total: 7.58 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.69 Total: -6.14 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.31 Total: -43.73 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.18 Total: -15.22 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.22 Total: 16.72 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -2.08 Total: -1.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.27 -6.83 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781511.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.641 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds