Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21700 * 120.00136 * 0.02562 * 19 18 16 21 21 C 1.46658 * 120.00474 * 180.02562 * 19 18 16 22 22 C 1.36549 * 125.98472 * 179.71538 * 21 19 18 23 23 C 1.40412 * 106.70968 * 179.85440 * 22 21 19 24 24 Br 1.89105 * 126.44573 * 180.11682 * 23 22 21 25 25 C 1.35185 * 107.10062 * 0.41000 * 23 22 21 26 26 O 1.33963 * 108.75472 * 359.74596 * 25 23 22 27 27 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 29 29 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 30 30 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 31 31 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 32 32 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 33 33 H 1.08003 * 126.64087 * 0.02562 * 22 21 19 34 34 H 1.08003 * 125.61748 * 179.74517 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1993 -7.5039 0.6954 21 6 -1.9623 -8.4765 -1.2765 22 6 -2.4241 -9.6572 -0.7691 23 6 -2.9404 -10.3874 -1.8516 24 35 -3.7255 -12.1061 -1.7749 25 6 -2.7647 -9.6333 -2.9597 26 8 -2.1751 -8.4827 -2.6087 27 1 -0.4850 0.8400 0.0004 28 1 -0.7146 -1.7148 -0.3630 29 1 -0.5197 -2.8483 1.0094 30 1 1.8513 -4.1847 1.0018 31 1 2.9071 -3.7537 -0.3789 32 1 -1.0306 -6.1896 -2.0959 33 1 -2.3997 -9.9678 0.2650 34 1 -3.0524 -9.9124 -3.9626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961941118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = 54.012219 kcal Electronic energy + Delta-G solvation = -20361.647261 eV Core-core repulsion = 16923.976249 eV Total energy + Delta-G solvation = -3437.671012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.21312 -39.77975 -38.22602 -34.66356 -34.04661 -32.72877 -31.34324 -30.39146 -29.51459 -27.09534 -25.86236 -24.03790 -22.01499 -21.63086 -20.61715 -20.23918 -19.24640 -18.56425 -16.96582 -16.85872 -16.68119 -16.34844 -14.80229 -14.63321 -14.56912 -13.85247 -13.57891 -13.53275 -13.47739 -13.29051 -12.76040 -12.25663 -12.09843 -11.58489 -11.39765 -11.14341 -10.85292 -10.79629 -10.47133 -10.33958 -10.24109 -10.10204 -10.00247 -9.70119 -9.25487 -9.15399 -8.83852 -8.45183 -6.95556 -5.68888 -3.13089 0.61965 1.08577 1.61075 2.23613 2.91138 2.99228 3.39001 3.42994 3.44313 4.18424 4.27218 4.30567 4.44980 4.78886 5.03705 5.10248 5.27331 5.31450 5.36792 5.53891 5.62615 5.75379 5.86105 6.00960 6.18343 6.20448 6.49808 6.63520 6.71535 6.84675 7.27984 7.36669 7.51473 7.76268 7.95283 8.24415 9.09639 9.73874 10.44526 11.34571 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.057913 B = 0.001862 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.365162 B =15037.887827 C =15131.299341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.168 4.168 12 H 0.103 0.897 13 C -0.183 4.183 14 H 0.104 0.896 15 C 0.160 3.840 16 C 0.088 3.912 17 H 0.134 0.866 18 N -0.682 5.682 19 C 0.603 3.397 20 O -0.513 6.513 21 C -0.057 4.057 22 C -0.099 4.099 23 C -0.200 4.200 24 Br -0.005 7.005 25 C 0.038 3.962 26 O -0.150 6.150 27 H 0.254 0.746 28 H 0.138 0.862 29 H 0.019 0.981 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.405 0.595 33 H 0.171 0.829 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 -24.769 -8.050 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.189 4.189 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.122 0.878 15 C 0.033 3.967 16 C -0.018 4.018 17 H 0.152 0.848 18 N -0.329 5.329 19 C 0.388 3.612 20 O -0.390 6.390 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.281 4.281 24 Br 0.079 6.921 25 C -0.036 4.036 26 O -0.045 6.045 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.239 0.761 33 H 0.188 0.812 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.034 -24.890 -7.316 27.471 hybrid contribution 0.442 0.831 -0.685 1.164 sum -8.592 -24.059 -8.001 26.771 Atomic orbital electron populations 1.69463 1.04974 1.24948 1.57831 1.24764 0.95716 0.97746 1.02693 0.86078 0.78337 0.82751 0.77888 1.21191 1.21533 1.21182 1.19067 0.90380 0.82136 1.42754 0.90251 1.46125 1.01300 0.99391 1.85661 1.22582 0.85459 0.95127 0.93718 1.24675 0.99716 0.91488 1.03043 0.87866 1.24407 0.91134 1.02449 1.02419 0.87827 1.21083 0.94823 0.85785 0.94996 1.22045 0.98052 0.85372 0.96306 0.84795 1.45305 1.59591 1.16479 1.11574 1.16409 0.78205 0.80383 0.86180 1.90915 1.56351 1.79236 1.12523 1.22218 1.09096 0.98979 0.80723 1.21798 0.97851 0.91744 1.00643 1.22157 1.12415 0.97289 0.96226 1.96713 1.80827 1.15586 1.99022 1.24377 0.96211 0.83213 0.99753 1.84169 1.60308 1.36078 1.23912 0.93480 0.84517 0.96279 0.95424 0.92914 0.76080 0.81186 0.76330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.12 55.49 0.56 -25.81 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -5.91 10.42 -15.06 -0.16 -6.07 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.22 3.46 -165.73 -0.57 -15.79 16 10 C 0.16 3.68 6.43 -0.29 0.00 3.68 16 11 C -0.17 -3.15 6.96 -89.22 -0.62 -3.78 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 13 C -0.18 -3.23 7.05 -89.24 -0.63 -3.86 16 14 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 15 C 0.16 3.33 7.05 -2.43 -0.02 3.31 16 16 C 0.09 1.45 5.97 -67.94 -0.41 1.05 16 17 H 0.13 2.46 7.40 -51.93 -0.38 2.08 16 18 N -0.68 -9.32 5.56 -55.12 -0.31 -9.63 16 19 C 0.60 8.62 7.79 -12.86 -0.10 8.52 16 20 O -0.51 -9.00 16.43 5.19 0.09 -8.91 16 21 C -0.06 -0.67 7.13 -36.79 -0.26 -0.93 16 22 C -0.10 -1.05 10.61 -39.37 -0.42 -1.47 16 23 C -0.20 -1.76 6.58 -39.85 -0.26 -2.02 16 24 Br -0.01 -0.04 34.10 -68.01 -2.32 -2.36 16 25 C 0.04 0.27 12.05 29.65 0.36 0.63 16 26 O -0.15 -1.43 10.40 4.93 0.05 -1.38 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.14 3.63 5.34 -51.93 -0.28 3.35 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 4.57 8.58 -40.82 -0.35 4.22 16 33 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.22 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -30.90 318.77 -8.85 -39.75 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.52 Total: 3.99 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.61 Total: -1.41 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.32 Total: -51.23 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.14 Total: -10.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.32 Total: -2.36 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.90 -8.85 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961941118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.759 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds