Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21700 * 120.00136 * 0.02562 * 19 18 16 21 21 C 1.46658 * 120.00474 * 180.02562 * 19 18 16 22 22 C 1.36549 * 125.98472 * 179.71538 * 21 19 18 23 23 C 1.40412 * 106.70968 * 179.85440 * 22 21 19 24 24 Br 1.89105 * 126.44573 * 180.11682 * 23 22 21 25 25 C 1.35185 * 107.10062 * 0.41000 * 23 22 21 26 26 O 1.33963 * 108.75472 * 359.74596 * 25 23 22 27 27 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 28 28 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 29 29 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 30 30 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 31 31 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 32 32 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 33 33 H 1.08003 * 126.64087 * 0.02562 * 22 21 19 34 34 H 1.08003 * 125.61748 * 179.74517 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1993 -7.5039 0.6954 21 6 -1.9623 -8.4765 -1.2765 22 6 -2.4241 -9.6572 -0.7691 23 6 -2.9404 -10.3874 -1.8516 24 35 -3.7255 -12.1061 -1.7749 25 6 -2.7647 -9.6333 -2.9597 26 8 -2.1751 -8.4827 -2.6087 27 1 -0.4850 0.8400 0.0004 28 1 -0.7146 -1.7148 -0.3630 29 1 -0.5197 -2.8483 1.0094 30 1 1.8513 -4.1847 1.0018 31 1 2.9071 -3.7537 -0.3789 32 1 -1.0306 -6.1896 -2.0959 33 1 -2.3997 -9.9678 0.2650 34 1 -3.0524 -9.9124 -3.9626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961941118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = 34.121573 kcal Electronic energy + Delta-G solvation = -20362.509785 eV Core-core repulsion = 16923.976249 eV Total energy + Delta-G solvation = -3438.533536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.95032 -41.07138 -39.68029 -36.12664 -34.90741 -34.33873 -32.35061 -31.83974 -30.36397 -28.83241 -27.67230 -25.18142 -23.18608 -22.73609 -22.01726 -21.40765 -20.81714 -19.52580 -18.89456 -17.73049 -17.63522 -17.48275 -16.70286 -15.85848 -15.78193 -15.44707 -14.91872 -14.60742 -14.43320 -14.29239 -14.17342 -13.80918 -13.26672 -13.10732 -13.02814 -12.74072 -12.69429 -12.16228 -12.01182 -11.78034 -11.70694 -11.61784 -11.35017 -10.96006 -10.74732 -10.69819 -9.98798 -9.69206 -8.96365 -7.75368 -5.22703 -0.19892 0.45223 0.89698 1.37820 1.49265 1.52474 1.58598 1.85373 1.95852 2.50485 2.82991 3.32395 3.40699 3.54542 3.66607 3.81411 3.87991 3.97662 4.12458 4.22800 4.35830 4.53240 4.66813 4.73973 4.85980 4.88439 4.98760 5.24832 5.29287 5.44509 5.46555 5.51522 5.77906 6.25930 6.29687 6.86951 7.02825 7.69965 8.44415 9.26033 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.057913 B = 0.001862 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.365162 B =15037.887827 C =15131.299341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.153 3.847 11 C -0.171 4.171 12 H 0.121 0.879 13 C -0.167 4.167 14 H 0.132 0.868 15 C 0.153 3.847 16 C 0.113 3.887 17 H 0.115 0.885 18 N -0.671 5.671 19 C 0.606 3.394 20 O -0.554 6.554 21 C -0.082 4.082 22 C -0.094 4.094 23 C -0.220 4.220 24 Br 0.005 6.995 25 C 0.070 3.930 26 O -0.149 6.149 27 H 0.249 0.751 28 H 0.109 0.891 29 H 0.000 1.000 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.419 0.581 33 H 0.167 0.833 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -26.463 -10.194 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.192 4.192 12 H 0.139 0.861 13 C -0.189 4.189 14 H 0.150 0.850 15 C 0.027 3.973 16 C 0.006 3.994 17 H 0.133 0.867 18 N -0.320 5.320 19 C 0.394 3.606 20 O -0.434 6.434 21 C -0.134 4.134 22 C -0.116 4.116 23 C -0.301 4.301 24 Br 0.089 6.911 25 C -0.003 4.003 26 O -0.044 6.044 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.018 0.982 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.257 0.743 33 H 0.184 0.816 34 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -9.001 -26.622 -9.489 29.662 hybrid contribution 0.378 1.204 -0.014 1.262 sum -8.623 -25.419 -9.504 28.474 Atomic orbital electron populations 1.69728 1.06213 1.25127 1.58857 1.25609 0.96631 1.00919 1.03060 0.85059 0.77031 0.78543 0.78115 1.20187 1.21980 1.20679 1.19450 0.90969 0.83349 1.42187 0.89758 1.46422 1.02117 1.00501 1.85956 1.22321 0.84869 0.96203 0.93743 1.24335 1.01361 0.90822 1.02692 0.86119 1.24320 0.90166 1.01815 1.02567 0.84978 1.21215 0.95987 0.84315 0.95761 1.21564 0.97164 0.85014 0.95651 0.86696 1.45076 1.59241 1.15566 1.12077 1.16648 0.77424 0.80666 0.85886 1.90893 1.57976 1.80136 1.14377 1.21531 1.11524 0.98595 0.81747 1.21936 0.96870 0.91641 1.01163 1.22272 1.13512 0.98170 0.96152 1.96731 1.80627 1.14744 1.99025 1.25290 0.92674 0.81354 1.00975 1.84170 1.60564 1.37046 1.22595 0.94113 0.87340 0.98221 0.95684 0.91873 0.74299 0.81564 0.71912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.75 10.12 21.65 0.22 -55.53 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.23 -12.83 10.42 84.03 0.88 -11.95 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 9 N -0.63 -32.17 3.46 -678.24 -2.35 -34.51 16 10 C 0.15 7.48 6.43 85.80 0.55 8.04 16 11 C -0.17 -6.34 6.96 -9.89 -0.07 -6.41 16 12 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 13 C -0.17 -5.68 7.05 -9.90 -0.07 -5.75 16 14 H 0.13 3.78 8.14 -2.38 -0.02 3.76 16 15 C 0.15 6.31 7.05 86.52 0.61 6.92 16 16 C 0.11 3.66 5.97 44.99 0.27 3.93 16 17 H 0.12 4.29 7.40 -2.39 -0.02 4.27 16 18 N -0.67 -17.30 5.56 -446.53 -2.48 -19.78 16 19 C 0.61 16.86 7.79 86.44 0.67 17.53 16 20 O -0.55 -19.59 16.43 -4.35 -0.07 -19.67 16 21 C -0.08 -1.76 7.13 24.07 0.17 -1.59 16 22 C -0.09 -1.87 10.61 22.40 0.24 -1.63 16 23 C -0.22 -3.30 6.58 22.10 0.15 -3.15 16 24 Br 0.00 0.06 34.10 -20.37 -0.69 -0.63 16 25 C 0.07 0.75 12.05 67.12 0.81 1.55 16 26 O -0.15 -2.38 10.40 -5.29 -0.06 -2.44 16 27 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.11 6.00 5.34 -2.39 -0.01 5.99 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.42 8.39 8.58 -92.70 -0.80 7.60 16 33 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.27 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -68.65 318.77 1.62 -67.03 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.36 Total: 14.33 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 4.67 Total: 4.02 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.61 Total: -109.83 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.13 Total: -22.10 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.69 Total: -0.63 kcal Total: -68.65 1.62 -67.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961941118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.149 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds