Wall clock time and date at job start Sat Apr 11 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47506 * 269.99884 * 3 2 1 5 5 H 1.48503 * 109.47385 * 30.00035 * 3 2 1 6 6 H 1.48503 * 109.47214 * 149.99848 * 3 2 1 7 7 C 1.38811 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00258 * 189.10010 * 7 2 1 9 9 N 1.36938 * 120.00127 * 9.09817 * 7 2 1 10 10 C 1.48144 * 127.83769 * 15.57360 * 9 7 2 11 11 C 1.54435 * 104.56008 * 140.40029 * 10 9 7 12 12 H 1.09010 * 118.18951 * 244.24053 * 11 10 9 13 13 C 1.54148 * 105.00568 * 23.91742 * 11 10 9 14 14 H 1.09002 * 123.10430 * 221.60883 * 13 11 10 15 15 C 1.48148 * 127.83976 * 195.57193 * 9 7 2 16 16 C 1.52998 * 118.09287 * 87.29546 * 11 10 9 17 17 H 1.08994 * 117.44265 * 16.00003 * 16 11 10 18 18 N 1.46498 * 117.44258 * 160.74464 * 16 11 10 19 19 C 1.34783 * 119.99951 * 224.00060 * 18 16 11 20 20 O 1.21633 * 119.99686 * 359.97438 * 19 18 16 21 21 C 1.47255 * 120.00099 * 180.02562 * 19 18 16 22 22 C 1.47067 * 127.20359 * 359.97438 * 21 19 18 23 23 C 1.34133 * 105.97004 * 179.70521 * 22 21 19 24 24 O 1.34265 * 109.16632 * 0.26425 * 23 22 21 25 25 C 1.33689 * 110.91380 * 359.97438 * 24 23 22 26 26 Br 1.89089 * 125.82210 * 180.02562 * 25 24 23 27 27 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.40983 * 259.19823 * 10 9 7 29 29 H 1.09004 * 110.40293 * 21.62968 * 10 9 7 30 30 H 1.08998 * 110.40505 * 100.80068 * 15 9 7 31 31 H 1.09001 * 110.40583 * 338.37103 * 15 9 7 32 32 H 0.96999 * 120.00268 * 44.00284 * 18 16 11 33 33 H 1.08002 * 127.00978 * 359.97349 * 22 21 19 34 34 H 1.08001 * 125.41263 * 180.24065 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2080 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7101 11 6 0.0654 -3.8177 -1.6163 12 1 -0.1204 -3.6948 -2.6833 13 6 1.2861 -4.5977 -1.0892 14 1 2.0178 -5.0714 -1.7437 15 6 1.8196 -3.7546 0.0889 16 6 -0.1184 -5.1932 -0.9721 17 1 -0.5685 -5.2272 0.0200 18 7 -0.4526 -6.3132 -1.8554 19 6 -1.4099 -7.1917 -1.4970 20 8 -1.9960 -7.0548 -0.4400 21 6 -1.7455 -8.3177 -2.3846 22 6 -1.1419 -8.6330 -3.6881 23 6 -1.7566 -9.7441 -4.1204 24 8 -2.6704 -10.1238 -3.2128 25 6 -2.6843 -9.2867 -2.1706 26 35 -3.8062 -9.4251 -0.6548 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7317 -2.7500 0.1081 29 1 -0.3432 -1.7022 -1.2911 30 1 1.4116 -4.1182 1.0320 31 1 2.9091 -3.7785 0.1108 32 1 0.0150 -6.4225 -2.6981 33 1 -0.3600 -8.0845 -4.1922 34 1 -1.5497 -10.2521 -5.0507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962219008.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:41 Heat of formation + Delta-G solvation = 58.641425 kcal Electronic energy + Delta-G solvation = -20559.875574 eV Core-core repulsion = 17122.405299 eV Total energy + Delta-G solvation = -3437.470275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.95679 -39.69361 -38.23389 -34.50829 -33.49799 -32.56854 -32.23083 -30.24956 -29.15256 -27.15211 -25.82130 -24.03472 -22.19993 -21.17662 -20.51003 -19.97125 -19.29388 -18.48919 -16.87995 -16.76830 -16.23373 -16.23058 -15.12542 -14.72659 -14.55219 -13.99289 -13.60658 -13.46845 -13.18889 -13.04066 -12.75046 -12.22485 -11.64774 -11.51655 -11.43855 -11.01990 -10.86690 -10.83336 -10.41262 -10.26231 -10.18292 -10.16332 -9.83699 -9.72973 -9.20297 -9.05285 -8.73941 -8.31727 -6.87019 -5.79377 -3.14063 0.50986 0.79295 1.62518 2.85147 3.11380 3.17719 3.38655 3.43691 3.45925 4.25536 4.31885 4.39740 4.47790 4.82036 5.10322 5.14294 5.22854 5.36419 5.39482 5.56301 5.74297 5.83284 5.88953 6.13118 6.23391 6.35390 6.51481 6.68381 6.80091 6.88279 7.36531 7.53282 7.54856 7.71915 8.20650 8.22385 9.10884 9.73633 10.50537 11.34840 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.002456 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.035409 B =11399.940943 C =11971.596861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.177 4.177 12 H 0.102 0.898 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.097 3.903 17 H 0.134 0.866 18 N -0.687 5.687 19 C 0.582 3.418 20 O -0.517 6.517 21 C -0.183 4.183 22 C -0.188 4.188 23 C -0.015 4.015 24 O -0.161 6.161 25 C 0.042 3.958 26 Br 0.087 6.913 27 H 0.255 0.745 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.398 0.602 33 H 0.166 0.834 34 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -23.454 -9.112 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.199 4.199 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.029 3.971 16 C -0.009 4.009 17 H 0.152 0.848 18 N -0.335 5.335 19 C 0.368 3.632 20 O -0.393 6.393 21 C -0.191 4.191 22 C -0.208 4.208 23 C -0.083 4.083 24 O -0.057 6.057 25 C -0.090 4.090 26 Br 0.171 6.829 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.232 0.768 33 H 0.184 0.816 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.760 -23.364 -7.752 25.528 hybrid contribution 1.106 0.840 -1.116 1.781 sum -5.654 -22.525 -8.868 24.859 Atomic orbital electron populations 1.69900 1.05049 1.25465 1.55584 1.24906 0.95645 0.97993 1.01690 0.86104 0.78694 0.83246 0.77604 1.21522 1.21639 1.20535 1.18998 0.90824 0.82291 1.43546 0.90503 1.45177 1.13346 0.99973 1.73144 1.21069 0.86904 0.92430 0.93686 1.24732 1.01777 0.92872 1.00524 0.88031 1.24277 0.90192 1.02394 1.03530 0.87861 1.21128 0.97196 0.85889 0.92929 1.21867 0.98774 0.84715 0.95522 0.84847 1.45129 1.38379 1.26935 1.23087 1.17021 0.80042 0.80946 0.85218 1.90876 1.51173 1.74138 1.23129 1.21349 1.00763 0.99211 0.97782 1.22956 1.03821 0.99081 0.94934 1.24094 0.91435 0.97950 0.94831 1.83876 1.50165 1.46429 1.25270 1.24219 1.00640 0.93251 0.90843 1.96992 1.61841 1.97915 1.26160 0.93505 0.95482 0.89084 0.95459 0.92957 0.76804 0.81629 0.76678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.81 10.86 55.49 0.60 -26.21 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.86 29.56 -169.99 -5.03 16.84 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.34 10.35 -15.06 -0.16 -6.50 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 9 N -0.59 -15.17 3.38 -168.83 -0.57 -15.74 16 10 C 0.19 4.48 5.70 -2.39 -0.01 4.46 16 11 C -0.18 -3.35 7.05 -89.27 -0.63 -3.98 16 12 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 13 C -0.18 -3.18 7.05 -89.29 -0.63 -3.81 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 15 C 0.16 3.24 7.04 -2.41 -0.02 3.23 16 16 C 0.10 1.63 5.98 -67.93 -0.41 1.22 16 17 H 0.13 2.54 7.40 -51.93 -0.38 2.16 16 18 N -0.69 -9.38 5.56 -54.94 -0.31 -9.69 16 19 C 0.58 8.63 7.81 -12.59 -0.10 8.53 16 20 O -0.52 -9.32 14.91 5.25 0.08 -9.24 16 21 C -0.18 -2.21 6.32 -103.25 -0.65 -2.87 16 22 C -0.19 -1.53 10.60 -37.45 -0.40 -1.92 16 23 C -0.02 -0.10 12.03 29.29 0.35 0.25 16 24 O -0.16 -1.58 10.53 7.42 0.08 -1.50 16 25 C 0.04 0.49 7.86 30.14 0.24 0.73 16 26 Br 0.09 1.02 32.42 -68.01 -2.20 -1.19 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 4.20 7.99 -40.82 -0.33 3.88 16 33 H 0.17 0.88 7.74 -52.49 -0.41 0.48 16 34 H 0.22 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -32.68 316.29 -8.62 -41.31 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.54 Total: 1.54 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.50 Total: -0.89 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.27 Total: -51.64 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.16 Total: -10.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 35 Polarization: 1.02 SS G_CDS: -2.20 Total: -1.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.68 -8.62 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962219008.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.948 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds