Wall clock time and date at job start Sat Apr 11 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47506 * 269.99884 * 3 2 1 5 5 H 1.48503 * 109.47385 * 30.00035 * 3 2 1 6 6 H 1.48503 * 109.47214 * 149.99848 * 3 2 1 7 7 C 1.38811 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00258 * 189.10010 * 7 2 1 9 9 N 1.36938 * 120.00127 * 9.09817 * 7 2 1 10 10 C 1.48144 * 127.83769 * 15.57360 * 9 7 2 11 11 C 1.54435 * 104.56008 * 140.40029 * 10 9 7 12 12 H 1.09010 * 118.18951 * 244.24053 * 11 10 9 13 13 C 1.54148 * 105.00568 * 23.91742 * 11 10 9 14 14 H 1.09002 * 123.10430 * 221.60883 * 13 11 10 15 15 C 1.48148 * 127.83976 * 195.57193 * 9 7 2 16 16 C 1.52998 * 118.09287 * 87.29546 * 11 10 9 17 17 H 1.08994 * 117.44265 * 16.00003 * 16 11 10 18 18 N 1.46498 * 117.44258 * 160.74464 * 16 11 10 19 19 C 1.34783 * 119.99951 * 224.00060 * 18 16 11 20 20 O 1.21633 * 119.99686 * 359.97438 * 19 18 16 21 21 C 1.47255 * 120.00099 * 180.02562 * 19 18 16 22 22 C 1.47067 * 127.20359 * 359.97438 * 21 19 18 23 23 C 1.34133 * 105.97004 * 179.70521 * 22 21 19 24 24 O 1.34265 * 109.16632 * 0.26425 * 23 22 21 25 25 C 1.33689 * 110.91380 * 359.97438 * 24 23 22 26 26 Br 1.89089 * 125.82210 * 180.02562 * 25 24 23 27 27 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.40983 * 259.19823 * 10 9 7 29 29 H 1.09004 * 110.40293 * 21.62968 * 10 9 7 30 30 H 1.08998 * 110.40505 * 100.80068 * 15 9 7 31 31 H 1.09001 * 110.40583 * 338.37103 * 15 9 7 32 32 H 0.96999 * 120.00268 * 44.00284 * 18 16 11 33 33 H 1.08002 * 127.00978 * 359.97349 * 22 21 19 34 34 H 1.08001 * 125.41263 * 180.24065 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2080 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7101 11 6 0.0654 -3.8177 -1.6163 12 1 -0.1204 -3.6948 -2.6833 13 6 1.2861 -4.5977 -1.0892 14 1 2.0178 -5.0714 -1.7437 15 6 1.8196 -3.7546 0.0889 16 6 -0.1184 -5.1932 -0.9721 17 1 -0.5685 -5.2272 0.0200 18 7 -0.4526 -6.3132 -1.8554 19 6 -1.4099 -7.1917 -1.4970 20 8 -1.9960 -7.0548 -0.4400 21 6 -1.7455 -8.3177 -2.3846 22 6 -1.1419 -8.6330 -3.6881 23 6 -1.7566 -9.7441 -4.1204 24 8 -2.6704 -10.1238 -3.2128 25 6 -2.6843 -9.2867 -2.1706 26 35 -3.8062 -9.4251 -0.6548 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7317 -2.7500 0.1081 29 1 -0.3432 -1.7022 -1.2911 30 1 1.4116 -4.1182 1.0320 31 1 2.9091 -3.7785 0.1108 32 1 0.0150 -6.4225 -2.6981 33 1 -0.3600 -8.0845 -4.1922 34 1 -1.5497 -10.2521 -5.0507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962219008.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:41 Heat of formation + Delta-G solvation = 36.544090 kcal Electronic energy + Delta-G solvation = -20560.833787 eV Core-core repulsion = 17122.405299 eV Total energy + Delta-G solvation = -3438.428487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.67220 -41.04098 -39.68965 -36.10053 -34.62175 -33.90514 -33.10825 -32.01323 -29.92094 -28.92080 -27.68966 -25.22274 -23.37199 -22.40622 -21.88417 -21.07997 -20.85606 -19.37886 -18.84944 -17.60137 -17.50949 -17.20068 -16.73558 -15.99782 -15.75615 -15.52036 -15.03549 -14.74944 -14.62459 -14.02745 -13.86852 -13.69441 -13.33414 -13.22126 -12.88679 -12.70252 -12.41299 -12.13703 -12.02797 -11.88026 -11.79141 -11.65051 -11.01102 -10.99426 -10.82302 -10.71657 -9.84991 -9.63323 -8.92200 -7.91046 -5.28357 -0.28559 -0.08892 1.01991 1.47694 1.49632 1.58774 1.82046 2.08948 2.33155 2.49437 2.87939 3.28885 3.48352 3.60629 3.64667 3.84928 3.92685 4.11857 4.15333 4.36452 4.41364 4.53303 4.71959 4.83091 4.90436 5.00524 5.21306 5.28695 5.41458 5.44876 5.53424 5.64870 5.69710 6.16940 6.46044 7.00315 7.12403 7.67783 8.46084 9.22808 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.002456 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.035409 B =11399.940943 C =11971.596861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.983 3.017 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.189 3.811 11 C -0.183 4.183 12 H 0.123 0.877 13 C -0.156 4.156 14 H 0.144 0.856 15 C 0.147 3.853 16 C 0.117 3.883 17 H 0.107 0.893 18 N -0.671 5.671 19 C 0.578 3.422 20 O -0.557 6.557 21 C -0.202 4.202 22 C -0.191 4.191 23 C 0.005 3.995 24 O -0.165 6.165 25 C 0.024 3.976 26 Br 0.071 6.929 27 H 0.250 0.750 28 H -0.006 1.006 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.418 0.582 33 H 0.197 0.803 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -25.208 -11.732 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.204 4.204 12 H 0.141 0.859 13 C -0.177 4.177 14 H 0.161 0.839 15 C 0.021 3.979 16 C 0.010 3.990 17 H 0.125 0.875 18 N -0.321 5.321 19 C 0.366 3.634 20 O -0.436 6.436 21 C -0.209 4.209 22 C -0.211 4.211 23 C -0.062 4.062 24 O -0.061 6.061 25 C -0.108 4.108 26 Br 0.155 6.845 27 H 0.059 0.941 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.256 0.744 33 H 0.215 0.785 34 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.879 -25.169 -10.405 27.669 hybrid contribution 0.522 1.294 -0.302 1.427 sum -4.357 -23.875 -10.708 26.527 Atomic orbital electron populations 1.70112 1.06662 1.25768 1.57110 1.25787 0.96475 1.01456 1.02018 0.85021 0.77695 0.78627 0.77611 1.20974 1.22307 1.19063 1.19426 0.91468 0.83443 1.42670 0.89732 1.45482 1.13675 1.01234 1.73707 1.20772 0.86080 0.93746 0.93087 1.24396 1.03995 0.91509 1.00494 0.85890 1.24192 0.90550 1.01121 1.01854 0.83871 1.21293 0.98166 0.84327 0.94086 1.21385 0.98215 0.84641 0.94765 0.87502 1.44861 1.38330 1.25530 1.23332 1.17468 0.79387 0.81438 0.85069 1.90861 1.52508 1.75199 1.25078 1.21273 1.01942 0.98397 0.99307 1.23309 1.04717 0.99891 0.93150 1.25133 0.89010 0.97154 0.94931 1.83902 1.50991 1.46047 1.25161 1.24160 1.01052 0.94106 0.91465 1.96960 1.62234 1.97955 1.27302 0.94142 0.98832 0.92449 0.96322 0.91431 0.74429 0.78550 0.71771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 10.86 21.65 0.24 -57.53 16 2 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 3 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.24 -13.53 10.35 84.03 0.87 -12.66 16 8 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 9 N -0.62 -32.03 3.38 -688.06 -2.32 -34.36 16 10 C 0.19 9.50 5.70 86.55 0.49 10.00 16 11 C -0.18 -6.75 7.05 -9.92 -0.07 -6.82 16 12 H 0.12 4.04 8.14 -2.38 -0.02 4.02 16 13 C -0.16 -5.08 7.05 -9.93 -0.07 -5.15 16 14 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 15 C 0.15 6.03 7.04 86.53 0.61 6.64 16 16 C 0.12 3.81 5.98 44.99 0.27 4.08 16 17 H 0.11 4.17 7.40 -2.39 -0.02 4.15 16 18 N -0.67 -16.79 5.56 -445.96 -2.48 -19.27 16 19 C 0.58 16.56 7.81 86.61 0.68 17.23 16 20 O -0.56 -20.41 14.91 -4.14 -0.06 -20.47 16 21 C -0.20 -4.47 6.32 -18.97 -0.12 -4.59 16 22 C -0.19 -2.30 10.60 23.65 0.25 -2.05 16 23 C 0.00 0.04 12.03 66.88 0.80 0.85 16 24 O -0.16 -2.79 10.53 3.65 0.04 -2.75 16 25 C 0.02 0.53 7.86 67.44 0.53 1.06 16 26 Br 0.07 1.69 32.42 -20.37 -0.66 1.03 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.06 3.24 6.51 -2.39 -0.02 3.22 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.42 7.16 7.99 -92.71 -0.74 6.42 16 33 H 0.20 1.01 7.74 -2.91 -0.02 0.98 16 34 H 0.27 -0.56 8.06 -2.91 -0.02 -0.59 16 Total: -1.00 -75.27 316.29 1.89 -73.39 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.41 Total: 7.07 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.70 Total: 5.42 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.57 Total: -111.16 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.02 Total: -23.22 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 35 Polarization: 1.69 SS G_CDS: -0.66 Total: 1.03 kcal Total: -75.27 1.89 -73.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962219008.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.930 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds