Wall clock time and date at job start Sat Apr 11 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09006 * 117.40754 * 252.33884 * 16 13 11 18 18 N 1.46503 * 117.44579 * 107.64647 * 16 13 11 19 19 C 1.34775 * 119.99929 * 135.75651 * 18 16 13 20 20 O 1.21562 * 120.00092 * 0.02562 * 19 18 16 21 21 C 1.47770 * 119.99930 * 180.02562 * 19 18 16 22 22 C 1.39619 * 120.14944 * 359.97438 * 21 19 18 23 23 C 1.38020 * 119.85248 * 179.97438 * 22 21 19 24 24 Cl 1.73594 * 119.92033 * 180.02562 * 23 22 21 25 25 C 1.38527 * 120.15335 * 359.97438 * 23 22 21 26 26 C 1.38249 * 120.30493 * 0.02562 * 25 23 22 27 27 C 1.38161 * 120.14883 * 359.74831 * 26 25 23 28 28 Cl 1.73589 * 120.08234 * 180.25324 * 27 26 25 29 29 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 30 30 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 31 31 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 32 32 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 33 33 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 34 34 H 0.96998 * 119.99589 * 315.76144 * 18 16 13 35 35 H 1.07995 * 120.07251 * 359.96099 * 22 21 19 36 36 H 1.07998 * 119.84326 * 180.02562 * 25 23 22 37 37 H 1.08003 * 119.92601 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3521 -5.2958 0.7147 18 7 -0.9202 -6.2772 -1.1358 19 6 -1.3392 -7.3937 -0.5078 20 8 -1.1993 -7.5034 0.6948 21 6 -1.9687 -8.4843 -1.2810 22 6 -2.1314 -8.3613 -2.6622 23 6 -2.7196 -9.3840 -3.3785 24 17 -2.9222 -9.2332 -5.0960 25 6 -3.1477 -10.5309 -2.7302 26 6 -2.9898 -10.6595 -1.3628 27 6 -2.3984 -9.6455 -0.6341 28 17 -2.1950 -9.8116 1.0818 29 1 -0.4850 0.8400 0.0004 30 1 -0.7146 -1.7148 -0.3630 31 1 -0.5197 -2.8483 1.0094 32 1 1.8513 -4.1847 1.0018 33 1 2.9071 -3.7537 -0.3789 34 1 -1.0321 -6.1894 -2.0953 35 1 -1.7979 -7.4678 -3.1689 36 1 -3.6070 -11.3282 -3.2956 37 1 -3.3254 -11.5565 -0.8636 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962378306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:53 Heat of formation + Delta-G solvation = 55.663666 kcal Electronic energy + Delta-G solvation = -23605.322557 eV Core-core repulsion = 19822.860007 eV Total energy + Delta-G solvation = -3782.462550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57635 -39.14688 -38.03938 -37.07079 -36.49305 -34.49479 -32.93925 -31.70220 -30.95072 -30.05250 -27.06756 -25.87890 -24.56107 -23.25846 -21.84097 -20.68456 -20.33658 -19.21369 -18.42784 -16.97708 -16.90047 -16.56570 -15.87968 -15.61813 -15.17311 -14.77335 -14.68111 -14.13657 -13.92995 -13.59509 -13.25123 -12.76612 -12.72764 -12.69274 -12.44190 -12.21710 -11.58746 -11.51099 -11.41012 -11.30404 -11.23021 -11.09599 -10.83970 -10.36375 -10.23012 -10.05800 -9.73230 -9.71264 -9.65312 -9.21276 -9.08342 -8.82009 -8.37964 -6.93545 -5.67274 -3.11379 0.15818 0.46061 1.50685 1.84717 2.43490 2.92844 3.25027 3.39827 3.43820 3.45135 4.05634 4.12255 4.32654 4.46140 4.51584 4.59012 4.78271 5.06900 5.16017 5.19578 5.34423 5.40301 5.46559 5.51168 5.57291 5.79071 5.88529 5.89176 6.10919 6.23635 6.52675 6.66340 6.76793 6.87478 7.30784 7.44693 7.53119 7.78175 8.12738 8.26327 9.11310 9.75524 10.46530 11.36087 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.002437 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.089236 B =11487.261852 C =12705.741660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.918 3.082 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.170 4.170 12 H 0.102 0.898 13 C -0.184 4.184 14 H 0.102 0.898 15 C 0.161 3.839 16 C 0.093 3.907 17 H 0.133 0.867 18 N -0.690 5.690 19 C 0.554 3.446 20 O -0.508 6.508 21 C -0.111 4.111 22 C -0.067 4.067 23 C -0.042 4.042 24 Cl -0.055 7.055 25 C -0.076 4.076 26 C -0.108 4.108 27 C 0.015 3.985 28 Cl -0.018 7.018 29 H 0.254 0.746 30 H 0.137 0.863 31 H 0.018 0.982 32 H 0.027 0.973 33 H 0.051 0.949 34 H 0.397 0.603 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 -23.499 -8.059 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.032 3.968 11 C -0.191 4.191 12 H 0.120 0.880 13 C -0.206 4.206 14 H 0.120 0.880 15 C 0.034 3.966 16 C -0.012 4.012 17 H 0.151 0.849 18 N -0.339 5.339 19 C 0.340 3.660 20 O -0.383 6.383 21 C -0.115 4.115 22 C -0.087 4.087 23 C -0.069 4.069 24 Cl -0.026 7.026 25 C -0.095 4.095 26 C -0.127 4.127 27 C -0.013 4.013 28 Cl 0.012 6.988 29 H 0.065 0.935 30 H 0.154 0.846 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.268 -23.261 -7.153 25.702 hybrid contribution 0.382 0.738 -0.810 1.160 sum -7.886 -22.523 -7.963 25.157 Atomic orbital electron populations 1.69468 1.04961 1.24907 1.57860 1.24755 0.95704 0.97709 1.02722 0.86087 0.78342 0.82800 0.77877 1.21205 1.21537 1.21202 1.19068 0.90375 0.82175 1.42723 0.90286 1.46120 1.01317 0.99376 1.85669 1.22563 0.85419 0.95140 0.93699 1.24660 0.99756 0.91702 1.03015 0.88017 1.24396 0.91158 1.02631 1.02400 0.87970 1.21071 0.94788 0.85792 0.94988 1.21965 0.97667 0.85289 0.96326 0.84919 1.45313 1.60584 1.16894 1.11115 1.17866 0.78997 0.81796 0.87372 1.90892 1.54767 1.79282 1.13359 1.19820 1.03120 0.95466 0.93086 1.21214 0.96753 0.98566 0.92138 1.20851 1.03347 0.96597 0.86096 1.98407 1.95996 1.97883 1.10316 1.21210 0.97855 0.96577 0.93908 1.21064 0.99529 0.98884 0.93198 1.21155 0.98093 0.94243 0.87821 1.98448 1.95130 1.97193 1.08045 0.93509 0.84590 0.96358 0.95494 0.93016 0.76840 0.83644 0.83495 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.12 55.49 0.56 -25.91 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.95 10.42 -15.06 -0.16 -6.11 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.32 3.46 -165.73 -0.57 -15.89 16 10 C 0.16 3.73 6.43 -0.29 0.00 3.72 16 11 C -0.17 -3.20 6.96 -89.22 -0.62 -3.83 16 12 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 13 C -0.18 -3.28 7.06 -89.24 -0.63 -3.91 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 15 C 0.16 3.37 7.05 -2.43 -0.02 3.35 16 16 C 0.09 1.55 5.97 -67.93 -0.41 1.14 16 17 H 0.13 2.48 7.40 -51.93 -0.38 2.10 16 18 N -0.69 -9.20 5.51 -54.77 -0.30 -9.50 16 19 C 0.55 7.78 7.76 -12.36 -0.10 7.69 16 20 O -0.51 -8.75 13.53 5.31 0.07 -8.68 16 21 C -0.11 -1.22 5.88 -104.94 -0.62 -1.84 16 22 C -0.07 -0.58 9.32 -39.15 -0.36 -0.95 16 23 C -0.04 -0.32 6.31 -39.55 -0.25 -0.57 16 24 Cl -0.06 -0.40 28.95 -51.86 -1.50 -1.90 16 25 C -0.08 -0.49 9.82 -39.47 -0.39 -0.88 16 26 C -0.11 -0.78 9.82 -39.61 -0.39 -1.17 16 27 C 0.02 0.16 6.35 -39.07 -0.25 -0.09 16 28 Cl -0.02 -0.21 26.02 -51.86 -1.35 -1.56 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.14 3.63 5.34 -51.93 -0.28 3.35 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.40 4.16 6.86 -40.82 -0.28 3.88 16 35 H 0.15 1.03 6.41 -52.49 -0.34 0.70 16 36 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 37 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -31.24 342.08 -11.02 -42.27 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.78 Total: 3.09 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -4.28 Total: -3.91 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.31 Total: -51.30 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -2.85 Total: -3.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.24 -11.02 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962378306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.929 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds