Wall clock time and date at job start Sat Apr 11 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00296 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99979 * 3 2 1 5 5 H 1.48498 * 109.47072 * 150.00081 * 3 2 1 6 6 H 1.48498 * 109.47087 * 29.99688 * 3 2 1 7 7 C 1.38815 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99809 * 155.61667 * 7 2 1 9 9 N 1.36937 * 119.99944 * 335.61437 * 7 2 1 10 10 C 1.48141 * 127.83847 * 158.93083 * 9 7 2 11 11 C 1.54389 * 104.61972 * 140.41544 * 10 9 7 12 12 H 1.08995 * 117.61518 * 244.78380 * 11 10 9 13 13 C 1.54281 * 104.95956 * 23.86679 * 11 10 9 14 14 H 1.08998 * 121.81770 * 222.17270 * 13 11 10 15 15 C 1.48145 * 127.83974 * 338.61234 * 9 7 2 16 16 C 1.53003 * 118.12264 * 89.21099 * 11 10 9 17 17 H 1.09001 * 117.44242 * 16.10274 * 16 11 10 18 18 N 1.46499 * 117.44409 * 160.81259 * 16 11 10 19 19 C 1.34773 * 119.99942 * 205.00138 * 18 16 11 20 20 O 1.21553 * 120.00061 * 359.97438 * 19 18 16 21 21 C 1.47852 * 120.00015 * 179.97438 * 19 18 16 22 22 C 1.39557 * 120.12957 * 359.71866 * 21 19 18 23 23 C 1.38087 * 119.86226 * 179.77339 * 22 21 19 24 24 Cl 1.73606 * 119.93428 * 180.23047 * 23 22 21 25 25 C 1.38449 * 120.13550 * 0.52844 * 23 22 21 26 26 C 1.38451 * 120.26517 * 359.69803 * 25 23 22 27 27 Cl 1.73602 * 119.93365 * 180.02562 * 26 25 23 28 28 C 1.38089 * 120.12852 * 0.04930 * 26 25 23 29 29 H 0.96998 * 120.00528 * 174.47574 * 1 2 3 30 30 H 1.09000 * 110.40761 * 259.20014 * 10 9 7 31 31 H 1.09005 * 110.40589 * 21.62995 * 10 9 7 32 32 H 1.09003 * 110.40893 * 338.36893 * 15 9 7 33 33 H 1.09003 * 110.41009 * 100.80005 * 15 9 7 34 34 H 0.97003 * 119.99850 * 24.99246 * 18 16 11 35 35 H 1.07998 * 120.07279 * 359.97438 * 22 21 19 36 36 H 1.07995 * 119.87144 * 179.72807 * 25 23 22 37 37 H 1.08009 * 120.06102 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5479 1.4400 0.7000 6 1 1.4478 2.6527 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0180 -1.2441 -0.3856 9 7 1.4171 -2.3350 0.4907 10 6 1.7764 -3.7440 0.2078 11 6 1.6233 -4.4651 1.5644 12 1 2.5222 -4.8800 2.0202 13 6 0.6305 -3.5982 2.3664 14 1 0.7823 -3.3795 3.4233 15 6 0.2747 -2.4294 1.4292 16 6 0.2569 -5.0566 1.9166 17 1 -0.4602 -5.1825 1.1054 18 7 0.2145 -6.0833 2.9608 19 6 -0.7901 -6.9815 2.9823 20 8 -1.6611 -6.9394 2.1355 21 6 -0.8326 -8.0180 4.0358 22 6 0.1692 -8.0724 5.0058 23 6 0.1216 -9.0398 5.9900 24 17 1.3636 -9.1055 7.2011 25 6 -0.9114 -9.9614 6.0092 26 6 -1.9057 -9.9154 5.0468 27 17 -3.1973 -11.0749 5.0795 28 6 -1.8716 -8.9494 4.0607 29 1 -0.4851 -0.8361 -0.0809 30 1 1.0942 -4.1698 -0.5280 31 1 2.8060 -3.8105 -0.1439 32 1 0.1726 -1.5051 1.9979 33 1 -0.6456 -2.6467 0.8870 34 1 0.9095 -6.1166 3.6367 35 1 0.9784 -7.3573 4.9888 36 1 -0.9421 -10.7190 6.7783 37 1 -2.6475 -8.9148 3.3101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962382660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:57 Heat of formation + Delta-G solvation = 38.481129 kcal Electronic energy + Delta-G solvation = -23320.188446 eV Core-core repulsion = 19536.980805 eV Total energy + Delta-G solvation = -3783.207641 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71854 -39.31042 -38.30954 -37.31098 -36.71905 -34.84534 -33.12142 -31.72790 -31.23286 -30.01037 -27.48121 -25.74547 -24.60247 -23.35468 -22.01055 -20.84748 -20.41654 -19.45726 -18.60647 -17.49892 -17.02706 -16.63668 -16.14931 -15.77414 -15.25782 -14.96154 -14.59670 -14.22752 -14.01249 -13.78697 -13.65127 -13.20780 -12.89096 -12.82913 -12.48147 -12.30356 -12.01718 -11.75047 -11.62724 -11.57460 -11.48650 -10.90124 -10.71785 -10.62381 -10.34145 -10.27164 -10.08060 -9.70556 -9.63004 -9.36692 -9.35204 -8.63888 -8.45831 -7.03903 -6.17236 -3.23367 0.06232 0.35955 1.21960 1.67520 2.24974 2.75368 3.13068 3.47333 3.51595 3.66818 3.98464 4.04013 4.24225 4.35217 4.43447 4.52342 4.63865 4.76261 4.85817 5.12723 5.22689 5.29854 5.37366 5.42011 5.47165 5.64758 5.70630 5.79012 5.86643 5.96405 6.31528 6.51472 6.54153 6.68545 6.91740 6.94731 7.25966 7.69723 7.92998 8.40511 8.92898 9.73801 10.35870 11.18933 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002133 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.560396 B =13125.832653 C =14062.011145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.025 4.025 3 Si 1.071 2.929 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.173 4.173 12 H 0.105 0.895 13 C -0.175 4.175 14 H 0.108 0.892 15 C 0.165 3.835 16 C 0.093 3.907 17 H 0.138 0.862 18 N -0.688 5.688 19 C 0.562 3.438 20 O -0.523 6.523 21 C -0.101 4.101 22 C -0.075 4.075 23 C -0.031 4.031 24 Cl -0.049 7.049 25 C -0.081 4.081 26 C -0.031 4.031 27 Cl -0.047 7.047 28 C -0.047 4.047 29 H 0.270 0.730 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.399 0.601 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -22.898 15.166 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.901 3.099 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.194 4.194 12 H 0.123 0.877 13 C -0.197 4.197 14 H 0.126 0.874 15 C 0.039 3.961 16 C -0.013 4.013 17 H 0.155 0.845 18 N -0.337 5.337 19 C 0.348 3.652 20 O -0.399 6.399 21 C -0.105 4.105 22 C -0.094 4.094 23 C -0.058 4.058 24 Cl -0.019 7.019 25 C -0.100 4.100 26 C -0.058 4.058 27 Cl -0.018 7.018 28 C -0.066 4.066 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.234 0.766 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.390 -21.159 14.649 25.773 hybrid contribution 0.711 -1.916 0.559 2.119 sum -0.679 -23.076 15.208 27.644 Atomic orbital electron populations 1.70735 1.06564 1.30435 1.47949 1.25898 0.96593 1.01286 0.98927 0.83451 0.74517 0.75515 0.76462 1.22046 1.21865 1.21069 1.19732 0.97239 0.86761 1.42271 0.91700 1.45253 1.37297 1.00147 1.49330 1.21140 0.98798 0.86099 0.91224 1.24346 0.92477 1.01928 1.00647 0.87724 1.25089 1.04331 0.90765 0.99472 0.87427 1.21040 0.90832 0.94284 0.89964 1.22578 0.99975 0.86133 0.92580 0.84471 1.45240 1.26708 1.30663 1.31045 1.17899 0.81972 0.80909 0.84408 1.90827 1.37531 1.72871 1.38706 1.19850 0.96108 0.97738 0.96833 1.21339 0.98393 0.97285 0.92404 1.20597 0.93017 0.98278 0.93892 1.98415 1.51594 1.97978 1.53961 1.21109 0.91816 0.98599 0.98485 1.20635 0.92642 0.94774 0.97796 1.98411 1.47849 1.57451 1.98131 1.21301 0.97685 0.90940 0.96722 0.91910 0.95498 0.92673 0.91283 0.95281 0.76564 0.83762 0.83254 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 12.82 55.49 0.71 -26.92 16 2 C -0.03 -0.71 5.12 -17.43 -0.09 -0.80 16 3 Si 1.07 25.10 29.98 -169.99 -5.10 20.00 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.33 -9.30 10.19 -15.06 -0.15 -9.46 16 8 H 0.07 1.80 7.94 -52.49 -0.42 1.38 16 9 N -0.60 -14.97 3.23 -169.11 -0.55 -15.52 16 10 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 11 C -0.17 -2.85 6.91 -89.22 -0.62 -3.47 16 12 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 13 C -0.18 -3.09 7.22 -87.20 -0.63 -3.72 16 14 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 15 C 0.16 3.78 5.01 -2.62 -0.01 3.77 16 16 C 0.09 1.44 6.20 -65.69 -0.41 1.04 16 17 H 0.14 2.41 7.40 -51.93 -0.38 2.03 16 18 N -0.69 -8.31 5.52 -52.58 -0.29 -8.60 16 19 C 0.56 7.26 7.77 -12.33 -0.10 7.16 16 20 O -0.52 -8.72 15.91 5.32 0.08 -8.63 16 21 C -0.10 -1.00 5.87 -104.98 -0.62 -1.62 16 22 C -0.07 -0.58 9.32 -39.15 -0.36 -0.95 16 23 C -0.03 -0.23 6.31 -39.56 -0.25 -0.48 16 24 Cl -0.05 -0.34 28.95 -51.86 -1.50 -1.84 16 25 C -0.08 -0.56 9.60 -39.43 -0.38 -0.94 16 26 C -0.03 -0.25 6.31 -39.56 -0.25 -0.50 16 27 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 28 C -0.05 -0.44 9.37 -39.14 -0.37 -0.81 16 29 H 0.27 8.17 6.41 -40.82 -0.26 7.91 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 33 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.40 3.61 6.86 -40.82 -0.28 3.33 16 35 H 0.14 0.86 6.40 -52.49 -0.34 0.53 16 36 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.16 1.51 7.65 -52.48 -0.40 1.11 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -32.06 347.35 -10.93 -42.98 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.78 Total: 2.78 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -4.25 Total: -7.63 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.12 Total: -51.04 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.10 Total: 20.00 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -3.00 Total: -3.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.06 -10.93 -42.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962382660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.465 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds