Wall clock time and date at job start Sat Apr 11 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00296 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99979 * 3 2 1 5 5 H 1.48498 * 109.47072 * 150.00081 * 3 2 1 6 6 H 1.48498 * 109.47087 * 29.99688 * 3 2 1 7 7 C 1.38815 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99809 * 155.61667 * 7 2 1 9 9 N 1.36937 * 119.99944 * 335.61437 * 7 2 1 10 10 C 1.48141 * 127.83847 * 158.93083 * 9 7 2 11 11 C 1.54389 * 104.61972 * 140.41544 * 10 9 7 12 12 H 1.08995 * 117.61518 * 244.78380 * 11 10 9 13 13 C 1.54281 * 104.95956 * 23.86679 * 11 10 9 14 14 H 1.08998 * 121.81770 * 222.17270 * 13 11 10 15 15 C 1.48145 * 127.83974 * 338.61234 * 9 7 2 16 16 C 1.53003 * 118.12264 * 89.21099 * 11 10 9 17 17 H 1.09001 * 117.44242 * 16.10274 * 16 11 10 18 18 N 1.46499 * 117.44409 * 160.81259 * 16 11 10 19 19 C 1.34773 * 119.99942 * 205.00138 * 18 16 11 20 20 O 1.21553 * 120.00061 * 359.97438 * 19 18 16 21 21 C 1.47852 * 120.00015 * 179.97438 * 19 18 16 22 22 C 1.39557 * 120.12957 * 359.71866 * 21 19 18 23 23 C 1.38087 * 119.86226 * 179.77339 * 22 21 19 24 24 Cl 1.73606 * 119.93428 * 180.23047 * 23 22 21 25 25 C 1.38449 * 120.13550 * 0.52844 * 23 22 21 26 26 C 1.38451 * 120.26517 * 359.69803 * 25 23 22 27 27 Cl 1.73602 * 119.93365 * 180.02562 * 26 25 23 28 28 C 1.38089 * 120.12852 * 0.04930 * 26 25 23 29 29 H 0.96998 * 120.00528 * 174.47574 * 1 2 3 30 30 H 1.09000 * 110.40761 * 259.20014 * 10 9 7 31 31 H 1.09005 * 110.40589 * 21.62995 * 10 9 7 32 32 H 1.09003 * 110.40893 * 338.36893 * 15 9 7 33 33 H 1.09003 * 110.41009 * 100.80005 * 15 9 7 34 34 H 0.97003 * 119.99850 * 24.99246 * 18 16 11 35 35 H 1.07998 * 120.07279 * 359.97438 * 22 21 19 36 36 H 1.07995 * 119.87144 * 179.72807 * 25 23 22 37 37 H 1.08009 * 120.06102 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5479 1.4400 0.7000 6 1 1.4478 2.6527 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0180 -1.2441 -0.3856 9 7 1.4171 -2.3350 0.4907 10 6 1.7764 -3.7440 0.2078 11 6 1.6233 -4.4651 1.5644 12 1 2.5222 -4.8800 2.0202 13 6 0.6305 -3.5982 2.3664 14 1 0.7823 -3.3795 3.4233 15 6 0.2747 -2.4294 1.4292 16 6 0.2569 -5.0566 1.9166 17 1 -0.4602 -5.1825 1.1054 18 7 0.2145 -6.0833 2.9608 19 6 -0.7901 -6.9815 2.9823 20 8 -1.6611 -6.9394 2.1355 21 6 -0.8326 -8.0180 4.0358 22 6 0.1692 -8.0724 5.0058 23 6 0.1216 -9.0398 5.9900 24 17 1.3636 -9.1055 7.2011 25 6 -0.9114 -9.9614 6.0092 26 6 -1.9057 -9.9154 5.0468 27 17 -3.1973 -11.0749 5.0795 28 6 -1.8716 -8.9494 4.0607 29 1 -0.4851 -0.8361 -0.0809 30 1 1.0942 -4.1698 -0.5280 31 1 2.8060 -3.8105 -0.1439 32 1 0.1726 -1.5051 1.9979 33 1 -0.6456 -2.6467 0.8870 34 1 0.9095 -6.1166 3.6367 35 1 0.9784 -7.3573 4.9888 36 1 -0.9421 -10.7190 6.7783 37 1 -2.6475 -8.9148 3.3101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962382660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:57 Heat of formation + Delta-G solvation = 19.744726 kcal Electronic energy + Delta-G solvation = -23321.000917 eV Core-core repulsion = 19536.980805 eV Total energy + Delta-G solvation = -3784.020112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65162 -40.46823 -39.49931 -37.88868 -37.33349 -36.36956 -34.68063 -32.73736 -31.96835 -31.52161 -29.20197 -27.48039 -25.68036 -24.07251 -23.41921 -22.08586 -21.79638 -20.97444 -19.54366 -19.46723 -18.01567 -17.47625 -16.97031 -16.57547 -16.26719 -16.13225 -15.79133 -15.59181 -15.37491 -15.23452 -14.98399 -14.91721 -13.90132 -13.65300 -13.46063 -13.41399 -13.34163 -12.99950 -12.64604 -12.54878 -12.35533 -12.33877 -12.21927 -12.06511 -11.91253 -11.85957 -11.65159 -11.37058 -10.91278 -10.62292 -10.29970 -9.97919 -9.80128 -9.10422 -8.39054 -5.41573 -0.62806 -0.26437 0.62474 1.08477 1.39424 1.57737 1.65494 1.71267 1.84155 2.30320 2.61941 2.69615 3.12952 3.24143 3.42640 3.60858 3.66857 3.72097 3.77810 3.79136 3.96905 3.99527 4.09862 4.26550 4.30571 4.63785 4.69096 4.70019 4.81379 4.84891 4.85980 4.99060 5.11246 5.16402 5.20213 5.34887 5.62197 6.24827 6.28182 6.79197 6.94587 7.62760 8.29725 8.97059 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002133 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.560396 B =13125.832653 C =14062.011145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.081 4.081 3 Si 1.124 2.876 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.290 1.290 7 C -0.339 4.339 8 H 0.065 0.935 9 N -0.622 5.622 10 C 0.145 3.855 11 C -0.150 4.150 12 H 0.143 0.857 13 C -0.179 4.179 14 H 0.133 0.867 15 C 0.169 3.831 16 C 0.117 3.883 17 H 0.114 0.886 18 N -0.673 5.673 19 C 0.564 3.436 20 O -0.567 6.567 21 C -0.113 4.113 22 C -0.063 4.063 23 C -0.032 4.032 24 Cl -0.039 7.039 25 C -0.068 4.068 26 C -0.034 4.034 27 Cl -0.045 7.045 28 C -0.054 4.054 29 H 0.253 0.747 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.005 0.995 34 H 0.419 0.581 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -24.558 17.413 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.277 4.277 3 Si 0.947 3.053 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.216 1.216 7 C -0.467 4.467 8 H 0.083 0.917 9 N -0.347 5.347 10 C 0.020 3.980 11 C -0.171 4.171 12 H 0.161 0.839 13 C -0.201 4.201 14 H 0.151 0.849 15 C 0.043 3.957 16 C 0.010 3.990 17 H 0.132 0.868 18 N -0.323 5.323 19 C 0.353 3.647 20 O -0.447 6.447 21 C -0.116 4.116 22 C -0.083 4.083 23 C -0.060 4.060 24 Cl -0.010 7.010 25 C -0.087 4.087 26 C -0.061 4.061 27 Cl -0.015 7.015 28 C -0.074 4.074 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.258 0.742 35 H 0.183 0.817 36 H 0.188 0.812 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.671 -22.877 16.929 28.468 hybrid contribution 0.050 -1.543 -0.141 1.550 sum 0.721 -24.420 16.787 29.643 Atomic orbital electron populations 1.70862 1.07688 1.29443 1.51073 1.27379 0.96632 1.04921 0.98736 0.82763 0.73963 0.71433 0.77120 1.20773 1.19651 1.21611 1.20049 0.97241 0.88020 1.41398 0.91700 1.45544 1.37546 1.01361 1.50239 1.21293 0.98888 0.84308 0.93542 1.24206 0.94133 1.01013 0.97751 0.83909 1.24825 1.05788 0.89862 0.99584 0.84944 1.20830 0.89606 0.95152 0.90155 1.22091 0.98788 0.85597 0.92542 0.86807 1.44992 1.27273 1.29440 1.30580 1.18335 0.81042 0.81026 0.84339 1.90814 1.39190 1.74054 1.40633 1.19490 0.97571 0.97545 0.97040 1.21481 0.97946 0.97445 0.91399 1.20622 0.93271 0.98115 0.93950 1.98427 1.51147 1.97932 1.53483 1.21360 0.90816 0.98456 0.98073 1.20607 0.93132 0.94625 0.97774 1.98415 1.47815 1.57197 1.98115 1.21279 0.97548 0.91499 0.97055 0.93674 0.96345 0.91839 0.94490 0.97756 0.74245 0.81664 0.81183 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.38 12.82 21.65 0.28 -59.11 16 2 C -0.08 -4.70 5.12 84.86 0.43 -4.27 16 3 Si 1.12 51.00 29.98 68.60 2.06 53.05 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.34 -19.24 10.19 84.03 0.86 -18.39 16 8 H 0.07 3.60 7.94 -2.91 -0.02 3.58 16 9 N -0.62 -31.86 3.23 -688.93 -2.22 -34.08 16 10 C 0.15 5.91 7.04 86.54 0.61 6.52 16 11 C -0.15 -4.64 6.91 -9.89 -0.07 -4.70 16 12 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 13 C -0.18 -6.16 7.22 -8.58 -0.06 -6.22 16 14 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 15 C 0.17 8.02 5.01 86.40 0.43 8.45 16 16 C 0.12 3.49 6.20 46.44 0.29 3.78 16 17 H 0.11 4.07 7.40 -2.39 -0.02 4.05 16 18 N -0.67 -14.69 5.52 -438.55 -2.42 -17.11 16 19 C 0.56 13.95 7.77 86.79 0.67 14.62 16 20 O -0.57 -19.15 15.91 -3.88 -0.06 -19.21 16 21 C -0.11 -2.03 5.87 -20.10 -0.12 -2.14 16 22 C -0.06 -0.79 9.32 22.55 0.21 -0.58 16 23 C -0.03 -0.37 6.31 22.28 0.14 -0.23 16 24 Cl -0.04 -0.41 28.95 -2.72 -0.08 -0.49 16 25 C -0.07 -0.75 9.60 22.37 0.21 -0.54 16 26 C -0.03 -0.49 6.31 22.29 0.14 -0.35 16 27 Cl -0.04 -0.61 28.95 -2.72 -0.08 -0.69 16 28 C -0.05 -0.96 9.37 22.55 0.21 -0.75 16 29 H 0.25 16.23 6.41 -92.71 -0.59 15.63 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.04 1.95 7.47 -2.39 -0.02 1.94 16 33 H 0.00 0.24 7.67 -2.39 -0.02 0.22 16 34 H 0.42 5.94 6.86 -92.71 -0.64 5.30 16 35 H 0.17 1.28 6.40 -2.91 -0.02 1.26 16 36 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.15 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -72.65 347.35 2.11 -70.54 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.67 Total: 11.90 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 3.96 Total: -4.80 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -4.37 Total: -110.30 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.06 Total: -19.21 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.06 Total: 53.05 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.16 Total: -1.18 kcal Total: -72.65 2.11 -70.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962382660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.289 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds