Wall clock time and date at job start Sat Apr 11 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47869 * 126.94967 * 359.69323 * 9 7 2 11 11 C 1.55993 * 105.11721 * 181.87325 * 10 9 7 12 12 H 1.08998 * 116.81219 * 159.41182 * 11 10 9 13 13 C 1.57090 * 99.47471 * 33.16079 * 11 10 9 14 14 C 1.49296 * 126.94212 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.14849 * 15.85051 * 14 9 7 16 16 C 1.56016 * 104.09351 * 246.70019 * 14 9 7 17 17 N 1.47867 * 105.10528 * 288.76921 * 16 14 9 18 18 C 1.34771 * 126.94299 * 182.02708 * 17 16 14 19 19 O 1.21611 * 120.00094 * 179.97438 * 18 17 16 20 20 C 1.47384 * 120.00081 * 359.96851 * 18 17 16 21 21 C 1.36390 * 127.18620 * 0.03259 * 20 18 17 22 22 O 1.33698 * 108.41794 * 179.97438 * 21 20 18 23 23 C 1.34218 * 110.90698 * 0.02562 * 22 21 20 24 24 Br 1.89100 * 125.44968 * 179.97438 * 23 22 21 25 25 C 1.34297 * 109.10224 * 359.70782 * 23 22 21 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.09007 * 110.30943 * 300.90657 * 10 9 7 28 28 H 1.09001 * 110.31495 * 63.08692 * 10 9 7 29 29 H 1.09000 * 112.36875 * 191.50974 * 13 11 10 30 30 H 1.09006 * 112.36822 * 64.07324 * 13 11 10 31 31 H 1.09000 * 110.31442 * 47.67734 * 16 14 9 32 32 H 1.09005 * 110.31049 * 169.75784 * 16 14 9 33 33 H 1.08003 * 125.79537 * 0.02562 * 21 20 18 34 34 H 1.07998 * 127.02417 * 180.29420 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5669 0.0063 11 6 -0.3638 -4.1104 0.0496 12 1 -1.3333 -4.4582 0.4061 13 6 0.8877 -4.5274 0.9027 14 6 1.9100 -3.7618 -0.0112 15 1 2.9652 -3.8358 0.2518 16 6 1.5027 -4.3426 -1.4007 17 7 0.0463 -4.5806 -1.3069 18 6 -0.7498 -5.1146 -2.2542 19 8 -1.9390 -5.2542 -2.0412 20 6 -0.1794 -5.5292 -3.5484 21 6 1.1238 -5.4411 -3.9410 22 8 1.2243 -5.9245 -5.1835 23 6 0.0289 -6.3335 -5.6364 24 35 -0.3000 -7.0839 -7.3407 25 6 -0.8953 -6.1299 -4.6835 26 1 -0.4850 0.8400 0.0040 27 1 -0.5736 -2.0959 0.8897 28 1 -0.5820 -2.1487 -0.8992 29 1 1.0527 -5.6048 0.8978 30 1 0.8531 -4.1237 1.9146 31 1 1.7185 -3.6224 -2.1899 32 1 2.0293 -5.2783 -1.5888 33 1 1.9369 -5.0483 -3.3484 34 1 -1.9492 -6.3587 -4.7402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032432896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:01 Heat of formation + Delta-G solvation = 39.656431 kcal Electronic energy + Delta-G solvation = -21640.684179 eV Core-core repulsion = 18202.390653 eV Total energy + Delta-G solvation = -3438.293526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.78205 -41.55177 -39.26750 -35.54543 -34.33450 -33.66046 -32.83877 -31.00751 -30.28612 -29.59204 -27.04057 -26.00616 -24.21739 -22.52146 -21.99629 -21.31511 -20.50214 -19.09755 -18.21467 -17.69794 -17.59606 -17.25857 -16.58986 -16.18820 -15.77779 -15.38769 -14.83181 -14.76735 -14.26713 -14.06791 -13.63606 -13.49716 -13.37619 -13.11967 -12.81975 -12.75498 -12.48941 -12.30835 -12.15449 -11.98657 -11.87237 -11.75120 -11.53036 -11.21324 -11.04310 -10.74621 -9.85788 -9.60172 -8.90965 -7.83807 -5.19490 -0.32253 0.13636 0.60991 1.48569 1.48975 1.58974 1.71520 2.18933 2.24882 2.49465 3.29568 3.34897 3.43558 3.67750 3.70661 3.85619 3.94599 4.03996 4.19485 4.22188 4.46802 4.59674 4.64972 4.75357 4.87023 4.94884 5.04478 5.14850 5.23764 5.46621 5.51962 5.55627 5.67380 6.10466 6.55577 7.03518 7.06036 7.72201 8.41844 9.27661 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.003017 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.338402 B = 9278.205572 C = 9933.450977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.256 1.256 5 H -0.302 1.302 6 H -0.299 1.299 7 C -0.226 4.226 8 H 0.100 0.900 9 N -0.616 5.616 10 C 0.187 3.813 11 C 0.102 3.898 12 H 0.114 0.886 13 C -0.129 4.129 14 C 0.139 3.861 15 H 0.144 0.856 16 C 0.071 3.929 17 N -0.602 5.602 18 C 0.594 3.406 19 O -0.591 6.591 20 C -0.252 4.252 21 C 0.062 3.938 22 O -0.158 6.158 23 C -0.039 4.039 24 Br 0.079 6.921 25 C -0.115 4.115 26 H 0.242 0.758 27 H 0.019 0.981 28 H -0.004 1.004 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.255 0.745 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -17.810 -11.421 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.264 4.264 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.230 1.230 6 H -0.226 1.226 7 C -0.355 4.355 8 H 0.118 0.882 9 N -0.341 5.341 10 C 0.060 3.940 11 C -0.001 4.001 12 H 0.132 0.868 13 C -0.168 4.168 14 C 0.033 3.967 15 H 0.161 0.839 16 C -0.053 4.053 17 N -0.334 5.334 18 C 0.385 3.615 19 O -0.474 6.474 20 C -0.257 4.257 21 C -0.010 4.010 22 O -0.054 6.054 23 C -0.165 4.165 24 Br 0.162 6.838 25 C -0.138 4.138 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.014 0.986 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.270 0.730 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.050 -17.961 -12.202 22.293 hybrid contribution -0.551 1.754 0.429 1.888 sum 4.500 -16.206 -11.773 20.530 Atomic orbital electron populations 1.70167 1.06670 1.25006 1.58892 1.25648 0.96318 1.01189 1.03257 0.85054 0.78722 0.79779 0.76053 1.17952 1.23030 1.22635 1.19597 0.91376 0.82937 1.41597 0.88213 1.45522 1.01330 1.01217 1.86002 1.21505 0.85184 0.90010 0.97257 1.24207 0.99761 0.94301 0.81833 0.86787 1.24088 0.93496 1.01034 0.98216 1.23628 0.98580 0.83012 0.91528 0.83871 1.23649 0.79165 1.00971 1.01484 1.49069 1.10317 1.59167 1.14857 1.17126 0.84897 0.76903 0.82539 1.90725 1.16650 1.58997 1.81034 1.21385 0.95145 1.12501 0.96675 1.25888 0.98575 0.94183 0.82356 1.83882 1.31692 1.61444 1.28377 1.23861 0.85308 1.10407 0.96926 1.96874 1.93394 1.80517 1.13009 1.22767 1.00916 0.99909 0.90174 0.94831 0.96315 0.98553 0.87652 0.89889 0.91566 0.86968 0.72958 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.54 10.56 21.65 0.23 -57.31 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.97 44.21 29.55 68.60 2.03 46.24 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.23 -11.42 10.38 84.03 0.87 -10.55 16 8 H 0.10 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -27.90 3.02 -648.64 -1.96 -29.86 16 10 C 0.19 9.03 4.77 87.15 0.42 9.44 16 11 C 0.10 3.79 5.24 46.92 0.25 4.04 16 12 H 0.11 4.26 8.06 -2.39 -0.02 4.24 16 13 C -0.13 -3.71 6.80 33.45 0.23 -3.48 16 14 C 0.14 4.26 5.53 46.92 0.26 4.52 16 15 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 16 C 0.07 1.93 4.40 87.16 0.38 2.32 16 17 N -0.60 -20.74 2.96 -772.18 -2.28 -23.03 16 18 C 0.59 22.04 7.89 86.65 0.68 22.72 16 19 O -0.59 -26.38 17.33 -4.07 -0.07 -26.45 16 20 C -0.25 -7.52 6.29 -18.99 -0.12 -7.64 16 21 C 0.06 1.42 10.78 67.39 0.73 2.14 16 22 O -0.16 -3.66 10.53 4.03 0.04 -3.62 16 23 C -0.04 -0.92 7.76 66.92 0.52 -0.40 16 24 Br 0.08 1.40 34.08 -20.37 -0.69 0.71 16 25 C -0.12 -3.12 10.95 23.68 0.26 -2.86 16 26 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.02 1.03 7.48 -2.38 -0.02 1.01 16 28 H 0.00 -0.22 7.66 -2.39 -0.02 -0.24 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.07 1.99 7.25 -2.39 -0.02 1.97 16 32 H 0.11 1.93 6.95 -2.38 -0.02 1.92 16 33 H 0.26 4.22 4.56 -2.91 -0.01 4.21 16 34 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -72.29 306.18 3.37 -68.92 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.14 Total: 7.59 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 4.94 Total: 16.80 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.01 Total: -110.19 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.03 Total: -30.07 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 35 Polarization: 1.40 SS G_CDS: -0.69 Total: 0.71 kcal Total: -72.29 3.37 -68.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032432896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.576 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds