Wall clock time and date at job start Sat Apr 11 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.09003 * 116.25028 * 159.68077 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.08997 * 116.15677 * 15.86358 * 14 9 7 16 16 C 1.55482 * 104.35427 * 246.77810 * 14 9 7 17 17 N 1.47859 * 105.17781 * 288.90623 * 16 14 9 18 18 C 1.34775 * 126.94990 * 181.92262 * 17 16 14 19 19 O 1.21718 * 119.99998 * 180.02562 * 18 17 16 20 20 C 1.46536 * 119.99830 * 359.97438 * 18 17 16 21 21 O 1.34962 * 126.00427 * 0.02824 * 20 18 17 22 22 C 1.33938 * 109.40150 * 179.97438 * 21 20 18 23 23 C 1.35085 * 108.80662 * 359.97438 * 22 21 20 24 24 C 1.36670 * 126.00181 * 179.71281 * 20 18 17 25 25 Br 1.89099 * 126.66453 * 0.02769 * 24 20 18 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 28 28 H 1.09002 * 110.31321 * 63.07753 * 10 9 7 29 29 H 1.09001 * 112.36900 * 64.26801 * 13 11 10 30 30 H 1.09000 * 112.36910 * 191.71305 * 13 11 10 31 31 H 1.09003 * 110.35167 * 169.94076 * 16 14 9 32 32 H 1.09008 * 110.30151 * 47.85182 * 16 14 9 33 33 H 1.07998 * 125.59556 * 180.02562 * 22 21 20 34 34 H 1.08004 * 126.43429 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3398 -4.4465 0.3989 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9664 -3.8365 0.2403 16 6 1.5026 -4.3421 -1.4014 17 7 0.0463 -4.5801 -1.3077 18 6 -0.7501 -5.1134 -2.2553 19 8 -1.9404 -5.2524 -2.0423 20 6 -0.1830 -5.5247 -3.5424 21 8 1.1128 -5.4261 -3.9063 22 6 1.2630 -5.8995 -5.1502 23 6 0.0606 -6.3123 -5.6071 24 6 -0.8726 -6.0812 -4.5829 25 35 -2.7239 -6.4628 -4.6352 26 1 -0.4850 0.8400 0.0040 27 1 -0.5781 -2.0936 0.8793 28 1 -0.5774 -2.1511 -0.9095 29 1 0.8524 -4.1240 1.9141 30 1 1.0524 -5.6050 0.8971 31 1 2.0278 -5.2786 -1.5892 32 1 1.7185 -3.6229 -2.1916 33 1 2.1928 -5.9447 -5.6976 34 1 -0.1440 -6.7427 -6.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032687001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:07 Heat of formation + Delta-G solvation = 55.610586 kcal Electronic energy + Delta-G solvation = -21934.315002 eV Core-core repulsion = 18496.713300 eV Total energy + Delta-G solvation = -3437.601702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.81818 -40.01284 -37.85125 -33.92773 -33.47380 -31.74722 -30.78071 -29.64932 -28.85644 -28.48817 -25.26426 -24.12060 -22.60239 -21.85327 -20.40048 -19.90443 -19.01913 -17.86286 -16.72825 -16.53621 -16.19789 -15.72616 -14.98754 -14.45681 -14.06478 -13.58753 -13.46605 -13.18108 -13.13669 -13.00184 -12.18486 -11.98295 -11.70998 -11.57787 -11.35610 -11.06376 -10.90785 -10.80556 -10.65076 -10.52048 -10.30707 -10.11900 -9.66102 -9.61933 -9.50851 -8.77896 -8.73126 -8.07165 -6.96099 -5.78920 -3.13717 0.93341 1.56777 2.08147 2.67843 3.26151 3.35880 3.36480 3.40623 3.42850 4.40040 4.48465 4.61374 4.97369 5.08725 5.15796 5.30708 5.40089 5.51281 5.56316 5.59025 5.71838 5.91678 5.94309 6.15050 6.22588 6.35210 6.41127 6.55096 6.61086 6.69495 7.38419 7.44247 7.68606 7.88093 8.07416 8.32481 9.07685 9.68665 10.37182 11.33326 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.003645 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.713398 B = 7679.255245 C = 7756.484634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.100 3.900 12 H 0.118 0.882 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.108 0.892 16 C 0.085 3.915 17 N -0.593 5.593 18 C 0.601 3.399 19 O -0.513 6.513 20 C -0.014 4.014 21 O -0.143 6.143 22 C -0.008 4.008 23 C -0.200 4.200 24 C -0.119 4.119 25 Br 0.010 6.990 26 H 0.255 0.745 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.215 0.785 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -15.503 -9.369 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.002 4.002 12 H 0.136 0.864 13 C -0.189 4.189 14 C 0.032 3.968 15 H 0.126 0.874 16 C -0.040 4.040 17 N -0.325 5.325 18 C 0.387 3.613 19 O -0.391 6.391 20 C -0.070 4.070 21 O -0.037 6.037 22 C -0.078 4.078 23 C -0.221 4.221 24 C -0.203 4.203 25 Br 0.095 6.905 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.300 -15.304 -9.128 17.822 hybrid contribution 0.847 0.947 -0.530 1.377 sum 0.548 -14.357 -9.658 17.312 Atomic orbital electron populations 1.69897 1.04967 1.25524 1.56213 1.24820 0.95681 0.97737 1.01919 0.86189 0.78451 0.83130 0.77887 1.21171 1.21595 1.21065 1.18998 0.90382 0.82038 1.44716 0.90162 1.45240 1.01303 0.99302 1.86289 1.21951 0.84794 0.86867 1.01536 1.24467 0.98129 0.97918 0.79697 0.86381 1.24217 0.96422 0.99003 0.99290 1.23161 0.96678 0.86302 0.90639 0.87397 1.23303 0.79184 0.99375 1.02160 1.49141 1.09881 1.58341 1.15137 1.16074 0.85493 0.79051 0.80659 1.90926 1.13230 1.56630 1.78307 1.22210 0.81435 1.06133 0.97241 1.84302 1.26646 1.63294 1.29483 1.24382 1.00440 0.99365 0.83639 1.21632 0.91559 1.07889 1.01002 1.22260 0.94151 1.07410 0.96430 1.96694 1.01899 1.93280 1.98665 0.93462 0.92282 0.93365 0.89446 0.91538 0.92461 0.90734 0.76843 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.56 55.49 0.59 -26.06 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.14 10.38 -15.06 -0.16 -6.30 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.19 3.02 -156.44 -0.47 -14.66 16 10 C 0.17 4.12 4.76 -1.68 -0.01 4.11 16 11 C 0.10 1.90 5.24 -62.55 -0.33 1.58 16 12 H 0.12 2.15 8.05 -51.93 -0.42 1.73 16 13 C -0.15 -2.48 6.83 -22.10 -0.15 -2.63 16 14 C 0.14 2.58 5.51 -62.64 -0.35 2.24 16 15 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 16 C 0.08 1.48 4.97 -1.98 -0.01 1.47 16 17 N -0.59 -11.18 2.95 -158.69 -0.47 -11.65 16 18 C 0.60 11.55 7.86 -12.92 -0.10 11.45 16 19 O -0.51 -10.79 15.58 5.17 0.08 -10.71 16 20 C -0.01 -0.24 6.97 -36.81 -0.26 -0.49 16 21 O -0.14 -2.04 8.52 4.84 0.04 -2.00 16 22 C -0.01 -0.08 12.07 29.61 0.36 0.28 16 23 C -0.20 -2.25 10.87 -39.86 -0.43 -2.68 16 24 C -0.12 -1.78 6.63 -39.31 -0.26 -2.04 16 25 Br 0.01 0.14 32.34 -68.01 -2.20 -2.06 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.06 1.53 7.47 -51.93 -0.39 1.15 16 28 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 32 H 0.07 1.45 7.94 -51.92 -0.41 1.04 16 33 H 0.22 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -31.57 306.98 -8.30 -39.87 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.68 Total: -0.63 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.79 Total: 6.75 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.35 Total: -52.37 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.12 Total: -12.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.20 Total: -2.06 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.57 -8.30 -39.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032687001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.481 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds