Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47864 * 126.94685 * 0.02779 * 9 7 2 11 11 C 1.56021 * 105.10416 * 181.97612 * 10 9 7 12 12 H 1.09003 * 116.25028 * 159.68077 * 11 10 9 13 13 C 1.57083 * 99.60735 * 32.80765 * 11 10 9 14 14 C 1.49290 * 126.93985 * 179.71194 * 9 7 2 15 15 H 1.08997 * 116.15677 * 15.86358 * 14 9 7 16 16 C 1.55482 * 104.35427 * 246.77810 * 14 9 7 17 17 N 1.47859 * 105.17781 * 288.90623 * 16 14 9 18 18 C 1.34775 * 126.94990 * 181.92262 * 17 16 14 19 19 O 1.21718 * 119.99998 * 180.02562 * 18 17 16 20 20 C 1.46536 * 119.99830 * 359.97438 * 18 17 16 21 21 O 1.34962 * 126.00427 * 0.02824 * 20 18 17 22 22 C 1.33938 * 109.40150 * 179.97438 * 21 20 18 23 23 C 1.35085 * 108.80662 * 359.97438 * 22 21 20 24 24 C 1.36670 * 126.00181 * 179.71281 * 20 18 17 25 25 Br 1.89099 * 126.66453 * 0.02769 * 24 20 18 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.08995 * 110.31873 * 300.88539 * 10 9 7 28 28 H 1.09002 * 110.31321 * 63.07753 * 10 9 7 29 29 H 1.09001 * 112.36900 * 64.26801 * 13 11 10 30 30 H 1.09000 * 112.36910 * 191.71305 * 13 11 10 31 31 H 1.09003 * 110.35167 * 169.94076 * 16 14 9 32 32 H 1.09008 * 110.30151 * 47.85182 * 16 14 9 33 33 H 1.07998 * 125.59556 * 180.02562 * 22 21 20 34 34 H 1.08004 * 126.43429 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5668 -0.0006 11 6 -0.3638 -4.1104 0.0488 12 1 -1.3398 -4.4465 0.3989 13 6 0.8873 -4.5275 0.9022 14 6 1.9100 -3.7617 -0.0177 15 1 2.9664 -3.8365 0.2403 16 6 1.5026 -4.3421 -1.4014 17 7 0.0463 -4.5801 -1.3077 18 6 -0.7501 -5.1134 -2.2553 19 8 -1.9404 -5.2524 -2.0423 20 6 -0.1830 -5.5247 -3.5424 21 8 1.1128 -5.4261 -3.9063 22 6 1.2630 -5.8995 -5.1502 23 6 0.0606 -6.3123 -5.6071 24 6 -0.8726 -6.0812 -4.5829 25 35 -2.7239 -6.4628 -4.6352 26 1 -0.4850 0.8400 0.0040 27 1 -0.5781 -2.0936 0.8793 28 1 -0.5774 -2.1511 -0.9095 29 1 0.8524 -4.1240 1.9141 30 1 1.0524 -5.6050 0.8971 31 1 2.0278 -5.2786 -1.5892 32 1 1.7185 -3.6229 -2.1916 33 1 2.1928 -5.9447 -5.6976 34 1 -0.1440 -6.7427 -6.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032687001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = 35.448232 kcal Electronic energy + Delta-G solvation = -21935.189307 eV Core-core repulsion = 18496.713300 eV Total energy + Delta-G solvation = -3438.476007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.84460 -41.53119 -39.36110 -35.55321 -34.71248 -33.43072 -31.89577 -31.10090 -30.37414 -29.99248 -27.00102 -25.66739 -24.03490 -22.87893 -21.73309 -21.43725 -20.47013 -19.37371 -18.28818 -17.69463 -17.57274 -17.20881 -16.49030 -16.06224 -15.73886 -15.08505 -14.78605 -14.65420 -14.18562 -13.95962 -13.73300 -13.58728 -13.39818 -13.11881 -12.86952 -12.69128 -12.67561 -12.34920 -12.19721 -12.10930 -11.91555 -11.80476 -11.52932 -10.85297 -10.70706 -10.61185 -9.92715 -9.52222 -8.92176 -7.84370 -5.20288 -0.22280 0.45597 1.19313 1.47302 1.50138 1.52683 1.56363 1.95223 2.05400 2.49016 3.29549 3.35305 3.47995 3.61539 3.74975 3.87243 3.98634 4.17963 4.18578 4.34764 4.53952 4.64254 4.71599 4.79466 4.90926 5.00351 5.11214 5.14286 5.23770 5.43835 5.47645 5.64347 5.69251 6.09626 6.44317 6.88727 7.02768 7.70839 8.41031 9.26925 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.003645 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.713398 B = 7679.255245 C = 7756.484634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.232 4.232 8 H 0.096 0.904 9 N -0.617 5.617 10 C 0.187 3.813 11 C 0.104 3.896 12 H 0.122 0.878 13 C -0.126 4.126 14 C 0.136 3.864 15 H 0.139 0.861 16 C 0.097 3.903 17 N -0.599 5.599 18 C 0.595 3.405 19 O -0.545 6.545 20 C -0.059 4.059 21 O -0.153 6.153 22 C 0.024 3.976 23 C -0.208 4.208 24 C -0.119 4.119 25 Br 0.002 6.998 26 H 0.244 0.756 27 H 0.024 0.976 28 H -0.005 1.005 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 -17.554 -10.572 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.230 1.230 6 H -0.198 1.198 7 C -0.360 4.360 8 H 0.114 0.886 9 N -0.341 5.341 10 C 0.061 3.939 11 C 0.001 3.999 12 H 0.140 0.860 13 C -0.165 4.165 14 C 0.030 3.970 15 H 0.156 0.844 16 C -0.028 4.028 17 N -0.331 5.331 18 C 0.383 3.617 19 O -0.426 6.426 20 C -0.114 4.114 21 O -0.047 6.047 22 C -0.046 4.046 23 C -0.228 4.228 24 C -0.203 4.203 25 Br 0.087 6.913 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.013 0.987 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.285 0.715 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.695 -17.402 -10.331 20.416 hybrid contribution -0.013 1.502 -0.290 1.530 sum 2.683 -15.900 -10.620 19.308 Atomic orbital electron populations 1.70150 1.06653 1.25268 1.58673 1.25665 0.96372 1.01210 1.03049 0.85162 0.77005 0.78842 0.78388 1.20322 1.23017 1.19760 1.19509 0.91292 0.83071 1.42147 0.88585 1.45497 1.01446 1.01073 1.86094 1.21536 0.85038 0.90005 0.97343 1.24313 0.99929 0.94352 0.81302 0.85994 1.24117 0.93302 1.00855 0.98232 1.23587 0.98487 0.83321 0.91610 0.84373 1.23143 0.78651 1.00407 1.00551 1.49190 1.10534 1.58433 1.14959 1.16452 0.85260 0.78462 0.81498 1.90886 1.14466 1.58003 1.79231 1.21645 0.82935 1.09886 0.96954 1.84272 1.25324 1.63751 1.31347 1.25523 1.02019 0.95330 0.81733 1.22046 0.90873 1.08362 1.01516 1.22648 0.94234 1.06237 0.97156 1.96682 1.02855 1.93144 1.98635 0.94691 0.95837 0.98682 0.89435 0.87859 0.88701 0.93156 0.71527 0.78932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.53 10.56 21.65 0.23 -58.31 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 3 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.23 -12.21 10.38 84.03 0.87 -11.34 16 8 H 0.10 4.64 7.83 -2.91 -0.02 4.62 16 9 N -0.62 -29.52 3.02 -648.87 -1.96 -31.48 16 10 C 0.19 9.33 4.76 87.17 0.42 9.75 16 11 C 0.10 4.00 5.24 46.93 0.25 4.25 16 12 H 0.12 4.57 8.05 -2.39 -0.02 4.56 16 13 C -0.13 -3.88 6.83 33.60 0.23 -3.66 16 14 C 0.14 4.69 5.51 46.87 0.26 4.95 16 15 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 16 C 0.10 3.19 4.97 86.97 0.43 3.63 16 17 N -0.60 -22.49 2.95 -774.17 -2.28 -24.77 16 18 C 0.59 23.07 7.86 86.41 0.68 23.75 16 19 O -0.55 -23.64 15.58 -4.41 -0.07 -23.71 16 20 C -0.06 -1.90 6.97 24.07 0.17 -1.74 16 21 O -0.15 -3.93 8.52 -5.61 -0.05 -3.98 16 22 C 0.02 0.38 12.07 67.09 0.81 1.19 16 23 C -0.21 -3.94 10.87 22.09 0.24 -3.70 16 24 C -0.12 -3.39 6.63 22.45 0.15 -3.25 16 25 Br 0.00 0.05 32.34 -20.37 -0.66 -0.61 16 26 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.02 1.31 7.47 -2.39 -0.02 1.30 16 28 H -0.01 -0.30 7.67 -2.39 -0.02 -0.32 16 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.09 2.46 7.75 -2.39 -0.02 2.44 16 32 H 0.05 1.92 7.94 -2.38 -0.02 1.90 16 33 H 0.27 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -74.24 306.98 3.33 -70.91 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.13 Total: 4.51 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 4.96 Total: 20.36 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -4.02 Total: -114.56 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.12 Total: -27.69 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.66 Total: -0.61 kcal Total: -74.24 3.33 -70.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032687001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.362 kcal (2) G-P(sol) polarization free energy of solvation -74.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds