Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47869 * 126.94967 * 359.69323 * 9 7 2 11 11 C 1.55993 * 105.11721 * 181.87325 * 10 9 7 12 12 H 1.08998 * 116.81219 * 159.41182 * 11 10 9 13 13 C 1.57090 * 99.47471 * 33.16079 * 11 10 9 14 14 C 1.49296 * 126.94212 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.14849 * 15.85051 * 14 9 7 16 16 C 1.56016 * 104.09351 * 246.70019 * 14 9 7 17 17 N 1.47867 * 105.10528 * 288.76921 * 16 14 9 18 18 C 1.34771 * 126.94299 * 182.02708 * 17 16 14 19 19 O 1.21633 * 120.00244 * 179.97438 * 18 17 16 20 20 C 1.47260 * 120.00261 * 359.97090 * 18 17 16 21 21 C 1.47067 * 127.19809 * 0.02562 * 20 18 17 22 22 C 1.34138 * 105.96713 * 179.97438 * 21 20 18 23 23 O 1.34270 * 109.16383 * 359.97438 * 22 21 20 24 24 C 1.33678 * 110.91551 * 359.76472 * 23 22 21 25 25 Br 1.89103 * 125.82440 * 180.28491 * 24 23 22 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.09007 * 110.30943 * 300.90657 * 10 9 7 28 28 H 1.09001 * 110.31495 * 63.08692 * 10 9 7 29 29 H 1.09000 * 112.36875 * 191.50974 * 13 11 10 30 30 H 1.09006 * 112.36822 * 64.07324 * 13 11 10 31 31 H 1.09000 * 110.31442 * 47.67734 * 16 14 9 32 32 H 1.09005 * 110.31049 * 169.75784 * 16 14 9 33 33 H 1.07992 * 127.01778 * 359.93949 * 21 20 18 34 34 H 1.07998 * 125.41493 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5669 0.0063 11 6 -0.3638 -4.1104 0.0496 12 1 -1.3333 -4.4582 0.4061 13 6 0.8877 -4.5274 0.9027 14 6 1.9100 -3.7618 -0.0112 15 1 2.9652 -3.8358 0.2518 16 6 1.5027 -4.3426 -1.4007 17 7 0.0463 -4.5806 -1.3069 18 6 -0.7498 -5.1146 -2.2542 19 8 -1.9392 -5.2542 -2.0412 20 6 -0.1799 -5.5289 -3.5473 21 6 1.2252 -5.4340 -3.9710 22 6 1.2693 -5.9294 -5.2167 23 8 0.0354 -6.3120 -5.5828 24 6 -0.8444 -6.0880 -4.6017 25 35 -2.6943 -6.4754 -4.6642 26 1 -0.4850 0.8400 0.0040 27 1 -0.5736 -2.0959 0.8897 28 1 -0.5820 -2.1487 -0.8992 29 1 1.0527 -5.6048 0.8978 30 1 0.8531 -4.1237 1.9146 31 1 1.7185 -3.6224 -2.1899 32 1 2.0293 -5.2783 -1.5888 33 1 2.0526 -5.0443 -3.3966 34 1 2.1563 -6.0088 -5.8276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032718148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = 63.850768 kcal Electronic energy + Delta-G solvation = -21875.561733 eV Core-core repulsion = 18438.317352 eV Total energy + Delta-G solvation = -3437.244381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.64313 -39.99615 -37.71973 -33.80203 -33.05622 -32.11517 -31.32826 -29.15713 -28.88353 -28.48796 -25.30561 -24.28749 -22.66702 -21.83169 -20.00081 -19.83679 -18.92004 -17.72205 -16.66069 -16.47652 -16.09796 -15.70687 -15.11643 -14.56699 -14.22996 -13.84843 -13.50696 -13.14887 -13.05125 -12.69200 -12.04672 -11.92143 -11.68998 -11.33223 -11.31087 -11.03329 -10.89748 -10.74926 -10.62928 -10.62080 -10.25172 -10.07563 -9.88988 -9.66089 -9.47394 -8.76049 -8.72865 -7.99331 -6.94921 -5.79019 -3.13757 0.76522 1.11412 1.98440 3.17080 3.35037 3.36135 3.40311 3.43810 3.60421 4.39614 4.59291 4.69196 5.02972 5.14675 5.18555 5.33036 5.39449 5.52665 5.56043 5.61541 5.75067 5.86571 6.09151 6.13379 6.26581 6.38686 6.45346 6.56440 6.64060 6.71908 7.40208 7.47737 7.70471 8.03595 8.08374 8.55288 9.07804 9.68829 10.37638 11.33175 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.003619 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.267471 B = 7735.320551 C = 7822.927263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.101 3.899 12 H 0.116 0.884 13 C -0.152 4.152 14 C 0.139 3.861 15 H 0.107 0.893 16 C 0.080 3.920 17 N -0.595 5.595 18 C 0.592 3.408 19 O -0.536 6.536 20 C -0.170 4.170 21 C -0.189 4.189 22 C -0.023 4.023 23 O -0.164 6.164 24 C 0.033 3.967 25 Br 0.079 6.921 26 H 0.254 0.746 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.174 0.826 34 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -15.366 -8.905 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.191 4.191 14 C 0.030 3.970 15 H 0.125 0.875 16 C -0.046 4.046 17 N -0.327 5.327 18 C 0.380 3.620 19 O -0.415 6.415 20 C -0.178 4.178 21 C -0.209 4.209 22 C -0.091 4.091 23 O -0.061 6.061 24 C -0.098 4.098 25 Br 0.163 6.837 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.191 0.809 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.387 -15.436 -9.166 17.956 hybrid contribution 1.016 1.161 -0.102 1.547 sum 0.630 -14.274 -9.268 17.031 Atomic orbital electron populations 1.69927 1.04965 1.25255 1.56334 1.24823 0.95670 0.97733 1.01980 0.86052 0.78669 0.83755 0.77279 1.20451 1.21785 1.21709 1.19084 0.90412 0.82040 1.44495 0.90080 1.45253 1.01348 0.99278 1.86257 1.21920 0.84691 0.87041 1.01438 1.24372 0.97916 0.97719 0.80104 0.86634 1.24167 0.96728 0.98942 0.99291 1.23210 0.96592 0.86370 0.90814 0.87517 1.23560 0.80157 0.98700 1.02159 1.48938 1.09325 1.59381 1.15102 1.16652 0.85379 0.78069 0.81899 1.90818 1.14225 1.56574 1.79888 1.21386 0.93733 1.06405 0.96251 1.23480 0.96272 1.04675 0.96472 1.24100 0.85595 1.02198 0.97224 1.83826 1.16996 1.65994 1.39242 1.24063 0.90844 1.05685 0.89211 1.96916 0.94866 1.93483 1.98406 0.93585 0.92549 0.93327 0.91601 0.89664 0.90770 0.92552 0.80853 0.76848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.56 55.49 0.59 -26.01 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.06 10.38 -15.06 -0.16 -6.22 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.04 3.02 -156.37 -0.47 -14.52 16 10 C 0.17 4.14 4.77 -1.69 -0.01 4.13 16 11 C 0.10 1.94 5.24 -62.55 -0.33 1.61 16 12 H 0.12 2.15 8.06 -51.93 -0.42 1.73 16 13 C -0.15 -2.50 6.80 -22.32 -0.15 -2.66 16 14 C 0.14 2.49 5.53 -62.57 -0.35 2.14 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 16 C 0.08 1.31 4.40 -1.68 -0.01 1.31 16 17 N -0.59 -11.08 2.96 -158.09 -0.47 -11.55 16 18 C 0.59 11.37 7.89 -12.60 -0.10 11.27 16 19 O -0.54 -11.39 15.70 5.25 0.08 -11.31 16 20 C -0.17 -2.80 6.26 -103.24 -0.65 -3.45 16 21 C -0.19 -2.45 9.56 -37.45 -0.36 -2.80 16 22 C -0.02 -0.25 12.03 29.29 0.35 0.11 16 23 O -0.16 -2.15 10.53 7.44 0.08 -2.07 16 24 C 0.03 0.50 7.86 30.14 0.24 0.74 16 25 Br 0.08 1.12 32.42 -68.01 -2.20 -1.08 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.06 1.47 7.48 -51.92 -0.39 1.08 16 28 H 0.05 1.34 7.66 -51.93 -0.40 0.95 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 1.34 7.23 -51.93 -0.38 0.96 16 32 H 0.06 0.75 6.92 -51.93 -0.36 0.39 16 33 H 0.17 2.00 4.96 -52.49 -0.26 1.74 16 34 H 0.22 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -31.80 303.17 -7.90 -39.70 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.44 Total: -0.11 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.61 Total: 5.94 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.35 Total: -52.08 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.16 Total: -13.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 35 Polarization: 1.12 SS G_CDS: -2.20 Total: -1.08 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.80 -7.90 -39.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032718148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.546 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds