Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47869 * 126.94967 * 359.69323 * 9 7 2 11 11 C 1.55993 * 105.11721 * 181.87325 * 10 9 7 12 12 H 1.08998 * 116.81219 * 159.41182 * 11 10 9 13 13 C 1.57090 * 99.47471 * 33.16079 * 11 10 9 14 14 C 1.49296 * 126.94212 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.14849 * 15.85051 * 14 9 7 16 16 C 1.56016 * 104.09351 * 246.70019 * 14 9 7 17 17 N 1.47867 * 105.10528 * 288.76921 * 16 14 9 18 18 C 1.34771 * 126.94299 * 182.02708 * 17 16 14 19 19 O 1.21633 * 120.00244 * 179.97438 * 18 17 16 20 20 C 1.47260 * 120.00261 * 359.97090 * 18 17 16 21 21 C 1.47067 * 127.19809 * 0.02562 * 20 18 17 22 22 C 1.34138 * 105.96713 * 179.97438 * 21 20 18 23 23 O 1.34270 * 109.16383 * 359.97438 * 22 21 20 24 24 C 1.33678 * 110.91551 * 359.76472 * 23 22 21 25 25 Br 1.89103 * 125.82440 * 180.28491 * 24 23 22 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.09007 * 110.30943 * 300.90657 * 10 9 7 28 28 H 1.09001 * 110.31495 * 63.08692 * 10 9 7 29 29 H 1.09000 * 112.36875 * 191.50974 * 13 11 10 30 30 H 1.09006 * 112.36822 * 64.07324 * 13 11 10 31 31 H 1.09000 * 110.31442 * 47.67734 * 16 14 9 32 32 H 1.09005 * 110.31049 * 169.75784 * 16 14 9 33 33 H 1.07992 * 127.01778 * 359.93949 * 21 20 18 34 34 H 1.07998 * 125.41493 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5669 0.0063 11 6 -0.3638 -4.1104 0.0496 12 1 -1.3333 -4.4582 0.4061 13 6 0.8877 -4.5274 0.9027 14 6 1.9100 -3.7618 -0.0112 15 1 2.9652 -3.8358 0.2518 16 6 1.5027 -4.3426 -1.4007 17 7 0.0463 -4.5806 -1.3069 18 6 -0.7498 -5.1146 -2.2542 19 8 -1.9392 -5.2542 -2.0412 20 6 -0.1799 -5.5289 -3.5473 21 6 1.2252 -5.4340 -3.9710 22 6 1.2693 -5.9294 -5.2167 23 8 0.0354 -6.3120 -5.5828 24 6 -0.8444 -6.0880 -4.6017 25 35 -2.6943 -6.4754 -4.6642 26 1 -0.4850 0.8400 0.0040 27 1 -0.5736 -2.0959 0.8897 28 1 -0.5820 -2.1487 -0.8992 29 1 1.0527 -5.6048 0.8978 30 1 0.8531 -4.1237 1.9146 31 1 1.7185 -3.6224 -2.1899 32 1 2.0293 -5.2783 -1.5888 33 1 2.0526 -5.0443 -3.3966 34 1 2.1563 -6.0088 -5.8276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032718148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = 43.294178 kcal Electronic energy + Delta-G solvation = -21876.453133 eV Core-core repulsion = 18438.317352 eV Total energy + Delta-G solvation = -3438.135782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 340.021 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.67252 -41.50812 -39.24399 -35.51702 -34.34733 -33.29442 -32.87646 -30.73365 -30.31313 -29.82700 -27.00512 -25.84495 -24.18043 -22.91024 -21.40752 -21.33696 -20.25444 -19.22695 -18.22266 -17.55922 -17.51898 -17.23682 -16.54236 -16.14302 -15.74516 -15.36906 -14.84454 -14.71679 -14.26815 -13.84810 -13.63061 -13.48812 -13.24495 -13.09313 -12.80218 -12.74637 -12.41011 -12.25362 -12.14465 -11.97425 -11.82483 -11.76974 -11.52168 -10.96762 -10.94272 -10.71174 -9.83939 -9.46939 -8.89411 -7.83321 -5.18938 -0.31039 -0.05585 1.02888 1.48204 1.48359 1.58711 1.85915 2.21936 2.31304 2.49636 3.33848 3.35830 3.52541 3.64116 3.79996 3.89897 4.03924 4.14094 4.22164 4.32993 4.55735 4.65844 4.74171 4.84972 4.93391 5.03694 5.15155 5.19789 5.25423 5.46679 5.53720 5.66978 5.70884 6.11060 6.60296 7.04057 7.09294 7.72507 8.42880 9.28334 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.003619 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.267471 B = 7735.320551 C = 7822.927263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.072 4.072 3 Si 0.975 3.025 4 H -0.256 1.256 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.226 4.226 8 H 0.099 0.901 9 N -0.616 5.616 10 C 0.188 3.812 11 C 0.103 3.897 12 H 0.116 0.884 13 C -0.129 4.129 14 C 0.135 3.865 15 H 0.140 0.860 16 C 0.087 3.913 17 N -0.599 5.599 18 C 0.583 3.417 19 O -0.569 6.569 20 C -0.198 4.198 21 C -0.206 4.206 22 C 0.007 3.993 23 O -0.162 6.162 24 C 0.021 3.979 25 Br 0.076 6.924 26 H 0.243 0.757 27 H 0.019 0.981 28 H -0.005 1.005 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.189 0.811 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -17.340 -9.798 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.230 1.230 6 H -0.225 1.225 7 C -0.355 4.355 8 H 0.117 0.883 9 N -0.341 5.341 10 C 0.062 3.938 11 C 0.000 4.000 12 H 0.134 0.866 13 C -0.168 4.168 14 C 0.029 3.971 15 H 0.158 0.842 16 C -0.036 4.036 17 N -0.331 5.331 18 C 0.373 3.627 19 O -0.450 6.450 20 C -0.205 4.205 21 C -0.225 4.225 22 C -0.060 4.060 23 O -0.058 6.058 24 C -0.110 4.110 25 Br 0.160 6.840 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.013 0.987 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.206 0.794 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 2.991 -17.460 -10.065 20.374 hybrid contribution 0.025 1.719 0.122 1.723 sum 3.016 -15.741 -9.944 18.861 Atomic orbital electron populations 1.70173 1.06706 1.25020 1.58982 1.25657 0.96332 1.01202 1.03281 0.85042 0.78702 0.79700 0.76109 1.17940 1.22965 1.22543 1.19599 0.91346 0.82997 1.41549 0.88336 1.45508 1.01359 1.01162 1.86032 1.21489 0.85125 0.90042 0.97144 1.24199 0.99674 0.94261 0.81886 0.86634 1.24069 0.93702 1.00864 0.98191 1.23657 0.98391 0.83146 0.91946 0.84247 1.23514 0.79148 1.00447 1.00533 1.49004 1.10329 1.59088 1.14682 1.17143 0.85125 0.77636 0.82811 1.90784 1.15634 1.57974 1.80634 1.21354 0.95990 1.07888 0.95290 1.23633 0.94823 1.06240 0.97793 1.25125 0.85613 0.98589 0.96663 1.83867 1.17743 1.65689 1.38531 1.24081 0.91266 1.06101 0.89599 1.96897 0.95231 1.93416 1.98428 0.94806 0.96336 0.98668 0.87904 0.89907 0.92310 0.87856 0.79437 0.71530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.50 10.56 21.65 0.23 -58.27 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 44.76 29.55 68.60 2.03 46.79 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 7 C -0.23 -11.70 10.38 84.03 0.87 -10.83 16 8 H 0.10 4.65 7.83 -2.91 -0.02 4.63 16 9 N -0.62 -28.86 3.02 -648.64 -1.96 -30.81 16 10 C 0.19 9.35 4.77 87.15 0.42 9.77 16 11 C 0.10 3.96 5.24 46.92 0.25 4.21 16 12 H 0.12 4.41 8.06 -2.39 -0.02 4.39 16 13 C -0.13 -3.92 6.80 33.45 0.23 -3.70 16 14 C 0.13 4.42 5.53 46.92 0.26 4.68 16 15 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 16 C 0.09 2.64 4.40 87.16 0.38 3.02 16 17 N -0.60 -21.81 2.96 -772.31 -2.28 -24.10 16 18 C 0.58 22.33 7.89 86.62 0.68 23.02 16 19 O -0.57 -24.78 15.70 -4.14 -0.06 -24.84 16 20 C -0.20 -6.24 6.26 -18.97 -0.12 -6.36 16 21 C -0.21 -4.62 9.56 23.65 0.23 -4.39 16 22 C 0.01 0.12 12.03 66.88 0.80 0.92 16 23 O -0.16 -3.78 10.53 3.71 0.04 -3.74 16 24 C 0.02 0.61 7.86 67.44 0.53 1.14 16 25 Br 0.08 2.16 32.42 -20.37 -0.66 1.50 16 26 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.02 1.04 7.48 -2.38 -0.02 1.02 16 28 H 0.00 -0.29 7.66 -2.39 -0.02 -0.31 16 29 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.06 1.99 7.23 -2.39 -0.02 1.98 16 32 H 0.10 2.23 6.92 -2.38 -0.02 2.21 16 33 H 0.19 3.54 4.96 -2.91 -0.01 3.53 16 34 H 0.27 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -74.39 303.17 3.46 -70.92 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.14 Total: 4.63 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 4.99 Total: 17.93 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.01 Total: -113.18 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.03 Total: -28.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 35 Polarization: 2.16 SS G_CDS: -0.66 Total: 1.50 kcal Total: -74.39 3.46 -70.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032718148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.217 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds