Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48501 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46888 * 299.99578 * 3 2 1 6 6 H 1.48497 * 109.47319 * 59.99730 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99844 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.47866 * 126.94970 * 359.97438 * 9 7 2 11 11 C 1.56016 * 105.10678 * 182.02339 * 10 9 7 12 12 H 1.08991 * 116.25137 * 159.68411 * 11 10 9 13 13 C 1.57087 * 99.60844 * 32.80230 * 11 10 9 14 14 C 1.49290 * 126.93935 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.15718 * 15.82153 * 14 9 7 16 16 C 1.56018 * 104.09220 * 246.67615 * 14 9 7 17 17 N 1.47866 * 105.10912 * 288.76835 * 16 14 9 18 18 C 1.34769 * 126.94902 * 182.00392 * 17 16 14 19 19 O 1.21562 * 120.00331 * 174.12986 * 18 17 16 20 20 C 1.47791 * 119.99925 * 354.12678 * 18 17 16 21 21 C 1.39631 * 120.12643 * 185.63199 * 20 18 17 22 22 C 1.37887 * 119.89051 * 179.72427 * 21 20 18 23 23 C 1.38509 * 120.14710 * 0.52791 * 22 21 20 24 24 Cl 1.73595 * 119.87145 * 179.74811 * 23 22 21 25 25 C 1.38601 * 120.25064 * 359.76467 * 23 22 21 26 26 Cl 1.73595 * 119.94286 * 179.97438 * 25 23 22 27 27 C 1.38025 * 120.10798 * 359.95996 * 25 23 22 28 28 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.31483 * 63.11042 * 10 9 7 30 30 H 1.09005 * 110.31277 * 300.93036 * 10 9 7 31 31 H 1.08994 * 112.36463 * 64.27706 * 13 11 10 32 32 H 1.09002 * 112.36813 * 191.71560 * 13 11 10 33 33 H 1.09011 * 110.31632 * 169.86187 * 16 14 9 34 34 H 1.08997 * 110.31538 * 47.68175 * 16 14 9 35 35 H 1.08001 * 120.05232 * 359.97345 * 21 20 18 36 36 H 1.08002 * 119.92663 * 180.27487 * 22 21 20 37 37 H 1.08001 * 120.07633 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5669 0.0005 11 6 -0.3638 -4.1103 0.0537 12 1 -1.3411 -4.4454 0.4009 13 6 0.8840 -4.5249 0.9132 14 6 1.9102 -3.7617 0.0005 15 1 2.9645 -3.8352 0.2673 16 6 1.5077 -4.3459 -1.3890 17 7 0.0511 -4.5838 -1.2998 18 6 -0.7418 -5.1196 -2.2487 19 8 -1.9085 -5.3571 -2.0031 20 6 -0.1931 -5.4184 -3.5881 21 6 -1.0368 -5.8629 -4.6080 22 6 -0.5206 -6.1348 -5.8573 23 6 0.8342 -5.9785 -6.0993 24 17 1.4776 -6.3291 -7.6730 25 6 1.6782 -5.5435 -5.0896 26 17 3.3750 -5.3509 -5.4014 27 6 1.1717 -5.2628 -3.8367 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5738 -2.1537 -0.9111 30 1 -0.5814 -2.0911 0.8774 31 1 0.8451 -4.1184 1.9238 32 1 1.0491 -5.6023 0.9119 33 1 2.0337 -5.2830 -1.5724 34 1 1.7263 -3.6276 -2.1792 35 1 -2.0927 -5.9896 -4.4197 36 1 -1.1734 -6.4744 -6.6478 37 1 1.8297 -4.9235 -3.0504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032748422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = 59.815356 kcal Electronic energy + Delta-G solvation = -24960.324435 eV Core-core repulsion = 21178.041916 eV Total energy + Delta-G solvation = -3782.282519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70193 -39.27590 -37.81042 -36.75388 -36.53905 -33.91546 -32.26093 -31.00896 -30.78389 -29.05042 -28.67047 -25.56997 -24.59225 -23.22524 -22.90811 -20.89783 -19.98611 -19.14284 -17.76896 -17.03528 -16.64034 -16.28637 -15.62351 -15.24287 -15.05501 -14.64975 -14.14867 -14.06848 -13.99213 -13.44635 -13.29014 -12.96874 -12.27555 -12.09730 -12.02433 -11.82739 -11.79643 -11.50980 -11.41824 -11.25770 -11.11531 -11.09449 -10.94575 -10.71827 -10.65839 -10.25724 -10.11281 -9.77976 -9.69244 -9.23054 -8.95124 -8.77556 -8.17570 -7.00905 -5.83756 -3.18801 0.41666 0.85667 1.59395 1.96372 2.70022 3.13812 3.33614 3.39004 3.41985 3.62551 4.33227 4.35874 4.47554 4.81573 4.88769 4.97668 5.00443 5.06610 5.23666 5.40250 5.47003 5.50201 5.61251 5.65760 5.70998 5.76015 5.92407 6.01124 6.14284 6.26390 6.30180 6.36534 6.48305 6.55575 7.34166 7.38473 7.64715 7.86421 8.02121 8.34430 9.02978 9.63993 10.31460 11.28415 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003715 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.265953 B = 7535.189506 C = 8559.344700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.099 3.901 12 H 0.118 0.882 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.110 0.890 16 C 0.067 3.933 17 N -0.596 5.596 18 C 0.571 3.429 19 O -0.546 6.546 20 C -0.105 4.105 21 C -0.048 4.048 22 C -0.110 4.110 23 C -0.015 4.015 24 Cl -0.050 7.050 25 C -0.039 4.039 26 Cl -0.046 7.046 27 C -0.099 4.099 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 -14.220 -9.248 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.047 3.953 11 C -0.003 4.003 12 H 0.135 0.865 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.128 0.872 16 C -0.058 4.058 17 N -0.328 5.328 18 C 0.360 3.640 19 O -0.426 6.426 20 C -0.108 4.108 21 C -0.067 4.067 22 C -0.129 4.129 23 C -0.043 4.043 24 Cl -0.021 7.021 25 C -0.067 4.067 26 Cl -0.017 7.017 27 C -0.117 4.117 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.439 -14.075 -9.344 17.069 hybrid contribution 0.618 0.987 -0.458 1.251 sum 3.057 -13.088 -9.802 16.635 Atomic orbital electron populations 1.69913 1.04976 1.25332 1.56248 1.24820 0.95675 0.97763 1.01796 0.86050 0.78739 0.83665 0.77296 1.20393 1.21735 1.21683 1.19094 0.90472 0.81955 1.44662 0.89978 1.45261 1.01305 0.99278 1.86173 1.21967 0.84791 0.86946 1.01555 1.24446 0.98104 0.97739 0.80041 0.86459 1.24165 0.96405 0.99059 0.99339 1.23243 0.96834 0.86394 0.90362 0.87199 1.23761 0.80282 0.98919 1.02800 1.49089 1.09250 1.58970 1.15516 1.17609 0.85322 0.77908 0.83173 1.90754 1.16466 1.54420 1.80939 1.20103 0.93204 1.02238 0.95272 1.21354 1.01075 0.93670 0.90598 1.20995 0.92405 1.01430 0.98072 1.21046 0.93681 1.02481 0.87063 1.98390 1.86564 1.93045 1.24112 1.20689 0.86482 1.05058 0.94429 1.98397 1.11614 1.95853 1.95787 1.22772 0.96250 0.96223 0.96489 0.93554 0.93359 0.92302 0.89460 0.91452 0.91790 0.89928 0.83126 0.83461 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.56 55.49 0.59 -25.41 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -5.98 10.38 -15.06 -0.16 -6.14 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -13.58 3.02 -156.32 -0.47 -14.05 16 10 C 0.17 3.94 4.76 -1.68 -0.01 3.93 16 11 C 0.10 1.80 5.25 -62.56 -0.33 1.47 16 12 H 0.12 2.07 8.03 -51.93 -0.42 1.65 16 13 C -0.15 -2.35 6.81 -22.28 -0.15 -2.51 16 14 C 0.14 2.42 5.53 -62.53 -0.35 2.07 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 16 C 0.07 1.06 4.23 -1.68 -0.01 1.05 16 17 N -0.60 -10.39 2.95 -158.85 -0.47 -10.86 16 18 C 0.57 10.07 7.85 -12.36 -0.10 9.98 16 19 O -0.55 -10.95 16.70 5.31 0.09 -10.86 16 20 C -0.10 -1.54 5.87 -104.97 -0.62 -2.15 16 21 C -0.05 -0.60 9.59 -39.19 -0.38 -0.97 16 22 C -0.11 -1.17 9.81 -39.61 -0.39 -1.56 16 23 C -0.01 -0.17 6.33 -39.35 -0.25 -0.42 16 24 Cl -0.05 -0.53 27.94 -51.86 -1.45 -1.98 16 25 C -0.04 -0.49 6.32 -39.53 -0.25 -0.74 16 26 Cl -0.05 -0.54 27.94 -51.86 -1.45 -1.99 16 27 C -0.10 -1.34 8.55 -39.16 -0.33 -1.67 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 30 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.81 6.88 -51.92 -0.36 0.45 16 34 H 0.08 1.43 6.87 -51.93 -0.36 1.07 16 35 H 0.15 1.77 7.66 -52.49 -0.40 1.37 16 36 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.18 2.38 2.81 -53.75 -0.15 2.23 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -29.79 332.76 -10.28 -40.07 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.71 Total: 1.73 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -3.40 Total: 2.14 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.35 Total: -50.32 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -2.90 Total: -3.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.79 -10.28 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032748422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.884 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds