Wall clock time and date at job start Sat Apr 11 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48501 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46888 * 299.99578 * 3 2 1 6 6 H 1.48497 * 109.47319 * 59.99730 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99844 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.47866 * 126.94970 * 359.97438 * 9 7 2 11 11 C 1.56016 * 105.10678 * 182.02339 * 10 9 7 12 12 H 1.08991 * 116.25137 * 159.68411 * 11 10 9 13 13 C 1.57087 * 99.60844 * 32.80230 * 11 10 9 14 14 C 1.49290 * 126.93935 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.15718 * 15.82153 * 14 9 7 16 16 C 1.56018 * 104.09220 * 246.67615 * 14 9 7 17 17 N 1.47866 * 105.10912 * 288.76835 * 16 14 9 18 18 C 1.34769 * 126.94902 * 182.00392 * 17 16 14 19 19 O 1.21562 * 120.00331 * 174.12986 * 18 17 16 20 20 C 1.47791 * 119.99925 * 354.12678 * 18 17 16 21 21 C 1.39631 * 120.12643 * 185.63199 * 20 18 17 22 22 C 1.37887 * 119.89051 * 179.72427 * 21 20 18 23 23 C 1.38509 * 120.14710 * 0.52791 * 22 21 20 24 24 Cl 1.73595 * 119.87145 * 179.74811 * 23 22 21 25 25 C 1.38601 * 120.25064 * 359.76467 * 23 22 21 26 26 Cl 1.73595 * 119.94286 * 179.97438 * 25 23 22 27 27 C 1.38025 * 120.10798 * 359.95996 * 25 23 22 28 28 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.31483 * 63.11042 * 10 9 7 30 30 H 1.09005 * 110.31277 * 300.93036 * 10 9 7 31 31 H 1.08994 * 112.36463 * 64.27706 * 13 11 10 32 32 H 1.09002 * 112.36813 * 191.71560 * 13 11 10 33 33 H 1.09011 * 110.31632 * 169.86187 * 16 14 9 34 34 H 1.08997 * 110.31538 * 47.68175 * 16 14 9 35 35 H 1.08001 * 120.05232 * 359.97345 * 21 20 18 36 36 H 1.08002 * 119.92663 * 180.27487 * 22 21 20 37 37 H 1.08001 * 120.07633 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5669 0.0005 11 6 -0.3638 -4.1103 0.0537 12 1 -1.3411 -4.4454 0.4009 13 6 0.8840 -4.5249 0.9132 14 6 1.9102 -3.7617 0.0005 15 1 2.9645 -3.8352 0.2673 16 6 1.5077 -4.3459 -1.3890 17 7 0.0511 -4.5838 -1.2998 18 6 -0.7418 -5.1196 -2.2487 19 8 -1.9085 -5.3571 -2.0031 20 6 -0.1931 -5.4184 -3.5881 21 6 -1.0368 -5.8629 -4.6080 22 6 -0.5206 -6.1348 -5.8573 23 6 0.8342 -5.9785 -6.0993 24 17 1.4776 -6.3291 -7.6730 25 6 1.6782 -5.5435 -5.0896 26 17 3.3750 -5.3509 -5.4014 27 6 1.1717 -5.2628 -3.8367 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5738 -2.1537 -0.9111 30 1 -0.5814 -2.0911 0.8774 31 1 0.8451 -4.1184 1.9238 32 1 1.0491 -5.6023 0.9119 33 1 2.0337 -5.2830 -1.5724 34 1 1.7263 -3.6276 -2.1792 35 1 -2.0927 -5.9896 -4.4197 36 1 -1.1734 -6.4744 -6.6478 37 1 1.8297 -4.9235 -3.0504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032748422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:16 Heat of formation + Delta-G solvation = 43.743504 kcal Electronic energy + Delta-G solvation = -24961.021362 eV Core-core repulsion = 21178.041916 eV Total energy + Delta-G solvation = -3782.979447 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.02403 -40.45092 -39.14395 -37.66018 -37.51849 -35.60085 -33.77659 -32.23990 -31.91338 -30.48821 -30.30491 -27.13247 -26.10749 -24.47456 -24.05490 -22.22910 -21.46541 -20.60777 -19.19731 -18.24018 -18.12278 -17.51360 -17.00992 -16.47086 -16.43460 -16.04654 -15.69331 -15.20186 -15.11732 -14.90474 -14.73104 -14.07811 -13.71866 -13.50642 -13.29973 -13.11192 -12.98622 -12.96609 -12.78161 -12.74629 -12.48484 -12.36002 -12.17827 -12.14125 -12.01685 -11.94692 -11.67569 -11.53377 -11.16973 -10.71778 -10.18516 -9.96870 -9.59839 -8.90293 -7.84370 -5.19625 -0.61706 -0.09827 0.67232 1.02058 1.47644 1.48469 1.52335 1.58110 1.82750 2.47582 2.49104 3.22612 3.32700 3.39535 3.48548 3.72868 3.80714 3.89803 3.96211 4.00436 4.05334 4.19638 4.40562 4.50492 4.54565 4.63199 4.73773 4.82892 4.84967 5.00565 5.06436 5.12509 5.22113 5.31867 5.45494 5.52172 5.66957 6.10163 6.50162 6.97250 7.03856 7.71507 8.40969 9.26997 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003715 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.265953 B = 7535.189506 C = 8559.344700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.302 1.302 6 H -0.297 1.297 7 C -0.227 4.227 8 H 0.097 0.903 9 N -0.615 5.615 10 C 0.186 3.814 11 C 0.102 3.898 12 H 0.120 0.880 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.140 0.860 16 C 0.075 3.925 17 N -0.601 5.601 18 C 0.567 3.433 19 O -0.579 6.579 20 C -0.125 4.125 21 C -0.048 4.048 22 C -0.097 4.097 23 C -0.014 4.014 24 Cl -0.036 7.036 25 C -0.046 4.046 26 Cl -0.040 7.040 27 C -0.099 4.099 28 H 0.243 0.757 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.155 0.845 36 H 0.180 0.820 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -16.386 -10.359 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.229 1.229 6 H -0.225 1.225 7 C -0.356 4.356 8 H 0.115 0.885 9 N -0.340 5.340 10 C 0.060 3.940 11 C 0.000 4.000 12 H 0.137 0.863 13 C -0.167 4.167 14 C 0.029 3.971 15 H 0.158 0.842 16 C -0.049 4.049 17 N -0.332 5.332 18 C 0.357 3.643 19 O -0.461 6.461 20 C -0.128 4.128 21 C -0.067 4.067 22 C -0.115 4.115 23 C -0.042 4.042 24 Cl -0.007 7.007 25 C -0.074 4.074 26 Cl -0.011 7.011 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.016 0.984 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.197 0.803 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.559 -16.290 -10.461 19.889 hybrid contribution 0.009 1.588 -0.210 1.602 sum 4.568 -14.702 -10.670 18.732 Atomic orbital electron populations 1.70145 1.06537 1.25026 1.58835 1.25598 0.96325 1.00989 1.03168 0.85089 0.78673 0.79928 0.76149 1.18208 1.22932 1.22472 1.19569 0.91305 0.83007 1.41730 0.88523 1.45497 1.01452 1.01036 1.85996 1.21554 0.85030 0.90030 0.97424 1.24270 0.99777 0.94222 0.81771 0.86267 1.24074 0.93448 1.00965 0.98229 1.23682 0.98576 0.83305 0.91554 0.84225 1.23702 0.79552 1.00505 1.01116 1.49142 1.10072 1.58795 1.15189 1.18099 0.84921 0.77198 0.84054 1.90723 1.17812 1.55938 1.81635 1.19943 0.94128 1.04540 0.94223 1.21482 1.01157 0.93218 0.90834 1.21280 0.92403 0.99879 0.97946 1.21220 0.93999 1.01566 0.87458 1.98401 1.86449 1.92826 1.23021 1.20735 0.86985 1.05254 0.94396 1.98399 1.11101 1.95842 1.95710 1.22653 0.95667 0.96354 0.97019 0.94754 0.98390 0.96026 0.89692 0.87735 0.87431 0.91601 0.82722 0.80284 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.02 10.56 21.65 0.23 -56.79 16 2 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 3 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.23 -11.62 10.38 84.03 0.87 -10.74 16 8 H 0.10 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.62 -28.14 3.02 -648.49 -1.96 -30.10 16 10 C 0.19 8.88 4.76 87.16 0.42 9.29 16 11 C 0.10 3.74 5.25 46.93 0.25 3.99 16 12 H 0.12 4.29 8.03 -2.39 -0.02 4.27 16 13 C -0.13 -3.71 6.81 33.48 0.23 -3.49 16 14 C 0.14 4.33 5.53 46.94 0.26 4.59 16 15 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 16 C 0.07 2.20 4.23 87.16 0.37 2.57 16 17 N -0.60 -20.58 2.95 -774.77 -2.28 -22.86 16 18 C 0.57 19.89 7.85 86.77 0.68 20.57 16 19 O -0.58 -23.51 16.70 -3.91 -0.07 -23.58 16 20 C -0.12 -3.54 5.87 -20.09 -0.12 -3.65 16 21 C -0.05 -1.12 9.59 22.52 0.22 -0.90 16 22 C -0.10 -1.79 9.81 22.25 0.22 -1.58 16 23 C -0.01 -0.30 6.33 22.42 0.14 -0.16 16 24 Cl -0.04 -0.66 27.94 -2.72 -0.08 -0.74 16 25 C -0.05 -1.06 6.32 22.31 0.14 -0.92 16 26 Cl -0.04 -0.85 27.94 -2.72 -0.08 -0.93 16 27 C -0.10 -2.49 8.55 22.55 0.19 -2.30 16 28 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.00 -0.12 7.68 -2.39 -0.02 -0.14 16 30 H 0.02 1.17 7.46 -2.38 -0.02 1.15 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.11 2.30 6.88 -2.38 -0.02 2.28 16 34 H 0.07 2.20 6.87 -2.39 -0.02 2.19 16 35 H 0.16 3.47 7.66 -2.91 -0.02 3.45 16 36 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.18 4.40 2.81 -4.10 -0.01 4.38 16 Total: -1.00 -68.07 332.76 3.25 -64.82 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.12 Total: 9.69 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 4.33 Total: 14.01 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.01 Total: -109.75 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.58 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.15 Total: -1.67 kcal Total: -68.07 3.25 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032748422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.560 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds