Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00034 * 2 1 4 4 H 1.48491 * 109.47284 * 274.99543 * 3 2 1 5 5 H 1.48503 * 109.46944 * 34.99331 * 3 2 1 6 6 H 1.48503 * 109.47013 * 154.99321 * 3 2 1 7 7 C 1.38810 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00061 * 174.07762 * 7 2 1 9 9 N 1.36935 * 120.00046 * 354.07443 * 7 2 1 10 10 C 1.47868 * 126.94556 * 4.97926 * 9 7 2 11 11 C 1.56018 * 105.10598 * 182.02585 * 10 9 7 12 12 H 1.09001 * 116.24897 * 159.68140 * 11 10 9 13 13 C 1.57080 * 99.60788 * 32.79990 * 11 10 9 14 14 C 1.49245 * 126.85113 * 184.94450 * 9 7 2 15 15 H 1.09000 * 116.20752 * 15.79193 * 14 9 7 16 16 C 1.56014 * 104.11708 * 246.58153 * 14 9 7 17 17 N 1.47872 * 105.19359 * 288.91441 * 16 14 9 18 18 C 1.34773 * 126.94578 * 181.94997 * 17 16 14 19 19 O 1.21568 * 119.99817 * 174.67153 * 18 17 16 20 20 C 1.47767 * 120.00090 * 354.67267 * 18 17 16 21 21 C 1.39631 * 120.15170 * 317.53295 * 20 18 17 22 22 C 1.37902 * 119.89439 * 179.97438 * 21 20 18 23 23 C 1.38403 * 120.19377 * 0.02562 * 22 21 20 24 24 C 1.38375 * 120.30454 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 119.94470 * 180.02562 * 24 23 22 26 26 C 1.38269 * 120.10457 * 359.74594 * 24 23 22 27 27 Cl 1.73603 * 120.09856 * 180.27969 * 26 24 23 28 28 H 0.96997 * 119.99710 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.31972 * 63.11080 * 10 9 7 30 30 H 1.09002 * 110.31126 * 300.92897 * 10 9 7 31 31 H 1.09001 * 112.36658 * 64.27645 * 13 11 10 32 32 H 1.08999 * 112.37198 * 191.71238 * 13 11 10 33 33 H 1.09001 * 110.31643 * 169.95688 * 16 14 9 34 34 H 1.08997 * 110.31672 * 47.86651 * 16 14 9 35 35 H 1.07999 * 120.04965 * 0.02562 * 21 20 18 36 36 H 1.07994 * 119.90122 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.84697 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0860 -1.2046 -0.0970 9 7 1.3311 -2.3849 0.1214 10 6 -0.1358 -2.5676 0.1595 11 6 -0.3495 -4.0999 0.3615 12 1 -1.3204 -4.4037 0.7529 13 6 0.9122 -4.4273 1.2380 14 6 1.9240 -3.7492 0.2417 15 1 2.9826 -3.7932 0.4977 16 6 1.5031 -4.4650 -1.0791 17 7 0.0488 -4.6980 -0.9471 18 6 -0.7547 -5.3238 -1.8298 19 8 -1.9193 -5.5320 -1.5501 20 6 -0.2201 -5.7571 -3.1375 21 6 0.6268 -4.9162 -3.8623 22 6 1.1231 -5.3260 -5.0819 23 6 0.7838 -6.5681 -5.5896 24 6 -0.0548 -7.4079 -4.8781 25 17 -0.4737 -8.9641 -5.5235 26 6 -0.5549 -7.0119 -3.6514 27 17 -1.6012 -8.0687 -2.7556 28 1 -0.4849 0.8400 0.0004 29 1 -0.5821 -2.2439 -0.7808 30 1 -0.5647 -2.0125 0.9938 31 1 0.8857 -3.9272 2.2062 32 1 1.0822 -5.4995 1.3362 33 1 2.0306 -5.4134 -1.1803 34 1 1.7074 -3.8255 -1.9378 35 1 0.8933 -3.9467 -3.4681 36 1 1.7778 -4.6756 -5.6428 37 1 1.1754 -6.8832 -6.5455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032749361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 47.255593 kcal Electronic energy + Delta-G solvation = -25066.814026 eV Core-core repulsion = 21283.986875 eV Total energy + Delta-G solvation = -3782.827151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50650 -39.28427 -37.64691 -36.66607 -36.51979 -33.73285 -32.08870 -30.99315 -30.77611 -29.01483 -28.59202 -25.35297 -24.58742 -23.08494 -22.93674 -20.85992 -19.93929 -18.91859 -17.83038 -16.90157 -16.54824 -16.26820 -15.73163 -15.45561 -14.76230 -14.53691 -14.33408 -14.09696 -13.97413 -13.43146 -13.15638 -12.53254 -12.23606 -12.11605 -11.99738 -11.86047 -11.66016 -11.55221 -11.38493 -11.30261 -11.08332 -10.91646 -10.89220 -10.80895 -10.66077 -10.29983 -10.13721 -9.71140 -9.61338 -9.15736 -8.92430 -8.74800 -8.08381 -7.00045 -5.84214 -3.18338 0.58042 0.75284 1.64905 2.05662 2.80642 3.19358 3.32443 3.38407 3.40851 3.44982 4.35294 4.36174 4.62015 4.72654 4.90117 5.00000 5.06602 5.10315 5.27017 5.32675 5.48089 5.56705 5.62137 5.71339 5.81636 5.85732 5.97936 6.12064 6.22023 6.27637 6.34924 6.43813 6.53240 6.61538 7.36113 7.40091 7.64950 7.93913 8.03262 8.41634 9.03227 9.64451 10.33292 11.27931 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.003364 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.935947 B = 8322.302506 C = 9068.062882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.100 3.900 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.108 0.892 16 C 0.078 3.922 17 N -0.598 5.598 18 C 0.570 3.430 19 O -0.528 6.528 20 C -0.098 4.098 21 C -0.070 4.070 22 C -0.108 4.108 23 C -0.085 4.085 24 C -0.042 4.042 25 Cl -0.050 7.050 26 C 0.008 3.992 27 Cl -0.027 7.027 28 H 0.254 0.746 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -14.793 -8.591 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.002 4.002 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.331 5.331 18 C 0.357 3.643 19 O -0.406 6.406 20 C -0.102 4.102 21 C -0.088 4.088 22 C -0.126 4.126 23 C -0.104 4.104 24 C -0.069 4.069 25 Cl -0.021 7.021 26 C -0.021 4.021 27 Cl 0.003 6.997 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.555 -14.878 -8.477 17.313 hybrid contribution 0.300 0.741 -0.226 0.831 sum 2.855 -14.137 -8.703 16.845 Atomic orbital electron populations 1.69920 1.04986 1.25410 1.55994 1.24836 0.95647 0.97722 1.01825 0.86135 0.78717 0.83582 0.77486 1.21682 1.21628 1.20549 1.19035 0.90905 0.82133 1.44151 0.90118 1.45243 1.01270 1.00171 1.85448 1.21960 0.84792 0.87238 1.01225 1.24405 0.98043 0.96134 0.81600 0.86605 1.24193 0.96455 0.99463 0.98869 1.23229 0.96637 0.86144 0.90740 0.87386 1.23485 0.79841 0.99015 1.02354 1.49101 1.09546 1.54632 1.19815 1.17497 0.85550 0.78394 0.82872 1.90807 1.16363 1.56060 1.77340 1.19894 0.99837 0.93336 0.97167 1.21723 0.93076 1.00000 0.94031 1.21206 1.00066 0.95665 0.95692 1.21186 0.95970 0.93312 0.99932 1.20635 1.02105 0.90006 0.94176 1.98384 1.92461 1.25693 1.85608 1.20758 0.96356 0.92421 0.92520 1.98416 1.63809 1.63701 1.73821 0.93521 0.93644 0.92203 0.89613 0.91573 0.92689 0.90806 0.83092 0.83724 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.75 10.59 55.49 0.59 -25.16 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 20.90 29.56 -169.99 -5.02 15.88 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.23 -5.93 10.36 -15.06 -0.16 -6.08 16 8 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.60 -13.56 3.02 -156.21 -0.47 -14.03 16 10 C 0.17 3.95 4.78 -1.68 -0.01 3.94 16 11 C 0.10 1.87 5.25 -62.55 -0.33 1.54 16 12 H 0.12 2.12 8.03 -51.93 -0.42 1.70 16 13 C -0.15 -2.44 6.81 -22.15 -0.15 -2.59 16 14 C 0.14 2.47 5.54 -62.42 -0.35 2.12 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 16 C 0.08 1.25 5.27 -1.68 -0.01 1.24 16 17 N -0.60 -10.64 2.95 -157.91 -0.47 -11.10 16 18 C 0.57 10.43 7.10 -12.37 -0.09 10.35 16 19 O -0.53 -11.09 15.81 5.31 0.08 -11.01 16 20 C -0.10 -1.50 5.46 -104.94 -0.57 -2.08 16 21 C -0.07 -0.90 8.53 -39.18 -0.33 -1.23 16 22 C -0.11 -1.07 10.03 -39.64 -0.40 -1.46 16 23 C -0.09 -0.82 9.82 -39.47 -0.39 -1.21 16 24 C -0.04 -0.50 6.32 -39.52 -0.25 -0.75 16 25 Cl -0.05 -0.55 27.95 -51.86 -1.45 -2.00 16 26 C 0.01 0.12 6.34 -39.03 -0.25 -0.13 16 27 Cl -0.03 -0.41 25.93 -51.86 -1.34 -1.75 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.19 7.79 -51.93 -0.40 0.79 16 30 H 0.06 1.52 7.35 -51.93 -0.38 1.14 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.22 5.87 -51.93 -0.30 0.91 16 35 H 0.15 2.05 5.99 -52.49 -0.31 1.74 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -30.09 334.09 -10.33 -40.42 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.91 Total: 0.25 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.37 Total: 3.47 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.35 Total: -50.29 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.79 Total: -3.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.09 -10.33 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032749361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.671 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds