Wall clock time and date at job start Sat Apr 11 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00034 * 2 1 4 4 H 1.48491 * 109.47284 * 274.99543 * 3 2 1 5 5 H 1.48503 * 109.46944 * 34.99331 * 3 2 1 6 6 H 1.48503 * 109.47013 * 154.99321 * 3 2 1 7 7 C 1.38810 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00061 * 174.07762 * 7 2 1 9 9 N 1.36935 * 120.00046 * 354.07443 * 7 2 1 10 10 C 1.47868 * 126.94556 * 4.97926 * 9 7 2 11 11 C 1.56018 * 105.10598 * 182.02585 * 10 9 7 12 12 H 1.09001 * 116.24897 * 159.68140 * 11 10 9 13 13 C 1.57080 * 99.60788 * 32.79990 * 11 10 9 14 14 C 1.49245 * 126.85113 * 184.94450 * 9 7 2 15 15 H 1.09000 * 116.20752 * 15.79193 * 14 9 7 16 16 C 1.56014 * 104.11708 * 246.58153 * 14 9 7 17 17 N 1.47872 * 105.19359 * 288.91441 * 16 14 9 18 18 C 1.34773 * 126.94578 * 181.94997 * 17 16 14 19 19 O 1.21568 * 119.99817 * 174.67153 * 18 17 16 20 20 C 1.47767 * 120.00090 * 354.67267 * 18 17 16 21 21 C 1.39631 * 120.15170 * 317.53295 * 20 18 17 22 22 C 1.37902 * 119.89439 * 179.97438 * 21 20 18 23 23 C 1.38403 * 120.19377 * 0.02562 * 22 21 20 24 24 C 1.38375 * 120.30454 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 119.94470 * 180.02562 * 24 23 22 26 26 C 1.38269 * 120.10457 * 359.74594 * 24 23 22 27 27 Cl 1.73603 * 120.09856 * 180.27969 * 26 24 23 28 28 H 0.96997 * 119.99710 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.31972 * 63.11080 * 10 9 7 30 30 H 1.09002 * 110.31126 * 300.92897 * 10 9 7 31 31 H 1.09001 * 112.36658 * 64.27645 * 13 11 10 32 32 H 1.08999 * 112.37198 * 191.71238 * 13 11 10 33 33 H 1.09001 * 110.31643 * 169.95688 * 16 14 9 34 34 H 1.08997 * 110.31672 * 47.86651 * 16 14 9 35 35 H 1.07999 * 120.04965 * 0.02562 * 21 20 18 36 36 H 1.07994 * 119.90122 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.84697 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0860 -1.2046 -0.0970 9 7 1.3311 -2.3849 0.1214 10 6 -0.1358 -2.5676 0.1595 11 6 -0.3495 -4.0999 0.3615 12 1 -1.3204 -4.4037 0.7529 13 6 0.9122 -4.4273 1.2380 14 6 1.9240 -3.7492 0.2417 15 1 2.9826 -3.7932 0.4977 16 6 1.5031 -4.4650 -1.0791 17 7 0.0488 -4.6980 -0.9471 18 6 -0.7547 -5.3238 -1.8298 19 8 -1.9193 -5.5320 -1.5501 20 6 -0.2201 -5.7571 -3.1375 21 6 0.6268 -4.9162 -3.8623 22 6 1.1231 -5.3260 -5.0819 23 6 0.7838 -6.5681 -5.5896 24 6 -0.0548 -7.4079 -4.8781 25 17 -0.4737 -8.9641 -5.5235 26 6 -0.5549 -7.0119 -3.6514 27 17 -1.6012 -8.0687 -2.7556 28 1 -0.4849 0.8400 0.0004 29 1 -0.5821 -2.2439 -0.7808 30 1 -0.5647 -2.0125 0.9938 31 1 0.8857 -3.9272 2.2062 32 1 1.0822 -5.4995 1.3362 33 1 2.0306 -5.4134 -1.1803 34 1 1.7074 -3.8255 -1.9378 35 1 0.8933 -3.9467 -3.4681 36 1 1.7778 -4.6756 -5.6428 37 1 1.1754 -6.8832 -6.5455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032749361.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:18 Heat of formation + Delta-G solvation = 30.751397 kcal Electronic energy + Delta-G solvation = -25067.529702 eV Core-core repulsion = 21283.986875 eV Total energy + Delta-G solvation = -3783.542827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85189 -40.45873 -39.01379 -37.59961 -37.56439 -35.47289 -33.58591 -32.22131 -31.80111 -30.53148 -30.22605 -26.99388 -25.97572 -24.50886 -23.88686 -22.24843 -21.43933 -20.37815 -19.26122 -18.23767 -17.90683 -17.46266 -17.00087 -16.90100 -16.06302 -15.95321 -15.63444 -15.31805 -15.16506 -14.92136 -14.58832 -13.86661 -13.69551 -13.41595 -13.27282 -13.04994 -12.96957 -12.86534 -12.83158 -12.65897 -12.53854 -12.31979 -12.25155 -12.16909 -12.01827 -11.93434 -11.81445 -11.51273 -11.03838 -10.68495 -10.14207 -9.87530 -9.55430 -8.89623 -7.83036 -5.17866 -0.41028 -0.18189 0.69517 1.07196 1.49595 1.51302 1.59455 1.60349 1.86896 2.37676 2.50664 3.22056 3.35271 3.43183 3.70156 3.72513 3.83734 3.88146 4.00956 4.04371 4.15554 4.20495 4.30127 4.56744 4.63697 4.76429 4.85129 4.90165 4.98610 5.01609 5.12250 5.13686 5.24203 5.44017 5.47191 5.53733 5.67573 6.11450 6.54609 7.01190 7.04980 7.73101 8.43545 9.28398 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.003364 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.935947 B = 8322.302506 C = 9068.062882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.304 1.304 6 H -0.262 1.262 7 C -0.228 4.228 8 H 0.097 0.903 9 N -0.614 5.614 10 C 0.188 3.812 11 C 0.102 3.898 12 H 0.113 0.887 13 C -0.130 4.130 14 C 0.138 3.862 15 H 0.138 0.862 16 C 0.086 3.914 17 N -0.601 5.601 18 C 0.565 3.435 19 O -0.567 6.567 20 C -0.121 4.121 21 C -0.075 4.075 22 C -0.090 4.090 23 C -0.066 4.066 24 C -0.045 4.045 25 Cl -0.041 7.041 26 C -0.007 4.007 27 Cl -0.045 7.045 28 H 0.243 0.757 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.183 0.817 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -16.412 -10.298 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.231 1.231 6 H -0.186 1.186 7 C -0.357 4.357 8 H 0.115 0.885 9 N -0.339 5.339 10 C 0.062 3.938 11 C -0.001 4.001 12 H 0.131 0.869 13 C -0.169 4.169 14 C 0.032 3.968 15 H 0.156 0.844 16 C -0.038 4.038 17 N -0.333 5.333 18 C 0.354 3.646 19 O -0.447 6.447 20 C -0.125 4.125 21 C -0.094 4.094 22 C -0.108 4.108 23 C -0.085 4.085 24 C -0.073 4.073 25 Cl -0.012 7.012 26 C -0.035 4.035 27 Cl -0.015 7.015 28 H 0.053 0.947 29 H 0.017 0.983 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.200 0.800 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.737 -16.543 -10.188 20.258 hybrid contribution -0.634 1.179 0.213 1.356 sum 5.103 -15.364 -9.975 19.015 Atomic orbital electron populations 1.70157 1.06610 1.25115 1.58561 1.25625 0.96281 1.01019 1.03080 0.85133 0.78052 0.79598 0.76967 1.21838 1.23127 1.18625 1.19519 0.91727 0.83026 1.41417 0.88508 1.45470 1.01301 1.01834 1.85265 1.21529 0.85129 0.89858 0.97265 1.24214 0.99467 0.93096 0.83307 0.86891 1.24099 0.93827 1.01204 0.97819 1.23629 0.98209 0.83210 0.91796 0.84438 1.23420 0.78848 1.00448 1.01059 1.49150 1.10429 1.54327 1.19369 1.18040 0.85093 0.77699 0.83792 1.90770 1.17964 1.57633 1.78323 1.19671 1.01985 0.94597 0.96236 1.21704 0.93175 0.99204 0.95270 1.21587 0.99063 0.95974 0.94174 1.21654 0.93892 0.92306 1.00598 1.20827 1.02182 0.90806 0.93499 1.98391 1.92466 1.25136 1.85225 1.20866 0.96963 0.92174 0.93519 1.98403 1.64550 1.64100 1.74475 0.94748 0.98346 0.96033 0.89915 0.88369 0.89114 0.91335 0.84254 0.80019 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.40 10.59 21.65 0.23 -56.17 16 2 C -0.07 -3.63 5.49 84.86 0.47 -3.16 16 3 Si 0.97 43.56 29.56 68.60 2.03 45.58 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.23 -11.48 10.36 84.03 0.87 -10.61 16 8 H 0.10 4.47 7.84 -2.91 -0.02 4.44 16 9 N -0.61 -27.94 3.02 -648.12 -1.96 -29.90 16 10 C 0.19 9.05 4.78 87.16 0.42 9.47 16 11 C 0.10 3.88 5.25 46.93 0.25 4.13 16 12 H 0.11 4.33 8.03 -2.39 -0.02 4.31 16 13 C -0.13 -4.01 6.81 33.56 0.23 -3.78 16 14 C 0.14 4.51 5.54 47.04 0.26 4.77 16 15 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 16 C 0.09 2.57 5.27 87.16 0.46 3.03 16 17 N -0.60 -21.28 2.95 -771.76 -2.27 -23.56 16 18 C 0.56 20.95 7.10 86.76 0.62 21.57 16 19 O -0.57 -24.70 15.81 -3.93 -0.06 -24.76 16 20 C -0.12 -3.61 5.46 -20.07 -0.11 -3.72 16 21 C -0.07 -1.79 8.53 22.53 0.19 -1.60 16 22 C -0.09 -1.41 10.03 22.23 0.22 -1.19 16 23 C -0.07 -0.99 9.82 22.34 0.22 -0.77 16 24 C -0.05 -0.96 6.32 22.31 0.14 -0.82 16 25 Cl -0.04 -0.80 27.95 -2.72 -0.08 -0.88 16 26 C -0.01 -0.18 6.34 22.63 0.14 -0.04 16 27 Cl -0.04 -1.34 25.93 -2.72 -0.07 -1.41 16 28 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.00 -0.09 7.79 -2.39 -0.02 -0.11 16 30 H 0.02 1.18 7.35 -2.39 -0.02 1.16 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.16 5.87 -2.39 -0.01 2.14 16 35 H 0.14 3.66 5.99 -2.91 -0.02 3.65 16 36 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -70.08 334.09 3.31 -66.77 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.12 Total: 7.04 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 4.37 Total: 17.28 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.00 Total: -109.62 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.15 Total: -2.29 kcal Total: -70.08 3.31 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032749361.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.520 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds