Wall clock time and date at job start Sat Apr 11 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00111 * 2 1 4 4 H 1.48502 * 109.47041 * 270.00472 * 3 2 1 5 5 H 1.48502 * 109.47211 * 30.00129 * 3 2 1 6 6 H 1.48496 * 109.47272 * 150.00107 * 3 2 1 7 7 C 1.38950 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00269 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99696 * 179.97438 * 7 2 1 10 10 C 1.34786 * 120.00106 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99199 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00006 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46734 * 179.97438 * 12 10 9 14 14 S 1.65601 * 119.99904 * 163.67605 * 13 12 10 15 15 O 1.42104 * 106.39828 * 310.04047 * 14 13 12 16 16 O 1.42098 * 106.40197 * 177.12375 * 14 13 12 17 17 C 1.76199 * 107.21924 * 63.58079 * 14 13 12 18 18 C 1.38537 * 120.02163 * 244.70911 * 17 14 13 19 19 C 1.38353 * 120.21142 * 179.97438 * 18 17 14 20 20 C 1.37978 * 120.32434 * 359.97438 * 19 18 17 21 21 C 1.39586 * 119.79497 * 0.02562 * 20 19 18 22 22 C 1.37493 * 120.02363 * 64.68708 * 17 14 13 23 23 C 1.50794 * 133.38033 * 0.02562 * 22 17 14 24 24 O 1.45393 * 106.41743 * 179.97438 * 23 22 17 25 25 C 1.34343 * 109.01629 * 0.02562 * 24 23 22 26 26 O 1.21470 * 124.89463 * 180.02562 * 25 24 23 27 27 H 0.97006 * 119.99967 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00544 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47446 * 60.00063 * 12 10 9 30 30 H 1.08997 * 109.47141 * 299.99864 * 12 10 9 31 31 H 0.96997 * 120.00133 * 343.67645 * 13 12 10 32 32 H 1.07993 * 119.89478 * 0.25678 * 18 17 14 33 33 H 1.08004 * 119.83431 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.10410 * 179.97438 * 20 19 18 35 35 H 1.09003 * 110.06914 * 299.23855 * 23 22 17 36 36 H 1.08997 * 110.06487 * 60.70991 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4472 -3.4209 -0.0011 12 6 5.5608 -2.3705 -0.0011 13 7 6.0490 -3.7518 -0.0005 14 16 7.6227 -4.0738 -0.4034 15 8 7.8709 -3.3938 -1.6262 16 8 7.7991 -5.4747 -0.2435 17 6 8.6403 -3.3023 0.8105 18 6 9.4899 -2.2698 0.4481 19 6 10.2903 -1.6608 1.3982 20 6 10.2490 -2.0758 2.7135 21 6 9.3955 -3.1155 3.0862 22 6 8.5915 -3.7243 2.1182 23 6 7.8015 -4.7911 2.8334 24 8 8.2090 -4.7387 4.2281 25 6 9.1299 -3.7723 4.3791 26 8 9.6665 -3.4817 5.4293 27 1 -0.4850 0.8401 0.0004 28 1 3.8649 -0.3633 -0.0007 29 1 5.9241 -1.8567 0.8889 30 1 5.9241 -1.8567 -0.8910 31 1 5.4506 -4.4776 0.2360 32 1 9.5242 -1.9361 -0.5784 33 1 10.9501 -0.8561 1.1090 34 1 10.8756 -1.5982 3.4521 35 1 6.7342 -4.5872 2.7473 36 1 8.0299 -5.7706 2.4132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117136840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:37 Heat of formation + Delta-G solvation = -168.240087 kcal Electronic energy + Delta-G solvation = -26999.979713 eV Core-core repulsion = 22769.142510 eV Total energy + Delta-G solvation = -4230.837203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84276 -40.39490 -39.65769 -38.70919 -38.40103 -37.09262 -36.38128 -35.46842 -33.77646 -33.26236 -32.71329 -28.97368 -28.52540 -25.98401 -25.78428 -23.58649 -22.81660 -21.46599 -20.64317 -20.47052 -19.23440 -18.79034 -18.57736 -18.07380 -17.67147 -17.38331 -17.27953 -16.80594 -16.64106 -16.21775 -16.07021 -15.81800 -15.17895 -15.02734 -14.94341 -14.61633 -14.38335 -14.24397 -14.22372 -13.93930 -13.58067 -13.34295 -13.26888 -13.19432 -13.15271 -12.94457 -12.40229 -12.23086 -12.19176 -11.96779 -11.56271 -11.52373 -10.81286 -10.76225 -10.49558 -10.27052 -10.26406 -8.41114 -6.03333 -0.89612 -0.73818 -0.45397 1.09146 1.32702 1.38342 1.47453 1.74283 1.78545 1.87666 2.22550 2.24865 2.35341 2.57320 2.72913 2.84254 3.15325 3.23527 3.58592 3.80178 3.85237 3.99025 4.00639 4.16551 4.20313 4.33376 4.38159 4.42923 4.59575 4.68384 4.85794 4.99087 5.31031 5.46147 5.53304 5.83922 5.97460 6.09116 6.54950 6.84981 7.35148 7.87473 8.75710 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.003498 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.853214 B = 8003.536072 C = 8551.714720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.223 1.223 7 C -0.331 4.331 8 H 0.059 0.941 9 N -0.581 5.581 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.108 3.892 13 N -1.104 6.104 14 S 2.716 3.284 15 O -0.966 6.966 16 O -0.971 6.971 17 C -0.661 4.661 18 C 0.021 3.979 19 C -0.129 4.129 20 C 0.022 3.978 21 C -0.232 4.232 22 C -0.003 4.003 23 C 0.056 3.944 24 O -0.321 6.321 25 C 0.521 3.479 26 O -0.487 6.487 27 H 0.279 0.721 28 H 0.393 0.607 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.428 0.572 32 H 0.182 0.818 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.461 1.041 1.552 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.211 4.211 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.146 1.146 7 C -0.460 4.460 8 H 0.077 0.923 9 N -0.222 5.222 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.021 4.021 13 N -0.868 5.868 14 S 2.806 3.194 15 O -0.956 6.956 16 O -0.961 6.961 17 C -0.748 4.748 18 C 0.002 3.998 19 C -0.148 4.148 20 C 0.004 3.996 21 C -0.234 4.234 22 C -0.005 4.005 23 C -0.017 4.017 24 O -0.236 6.236 25 C 0.365 3.635 26 O -0.376 6.376 27 H 0.089 0.911 28 H 0.230 0.770 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.266 0.734 32 H 0.199 0.801 33 H 0.207 0.793 34 H 0.182 0.818 35 H 0.166 0.834 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 25.388 0.079 1.443 25.429 hybrid contribution -0.653 0.715 0.843 1.284 sum 24.735 0.794 2.287 24.853 Atomic orbital electron populations 1.69803 1.08279 1.29360 1.49685 1.26126 0.96407 1.02809 0.95808 0.85446 0.79849 0.76695 0.80098 1.18054 1.20450 1.14587 1.19010 0.81332 0.95061 1.50596 0.92270 1.41948 1.05930 1.07625 1.66747 1.20662 0.90497 0.83653 0.81971 1.90553 1.70805 1.32613 1.55946 1.21137 0.90922 0.83434 1.06656 1.55160 1.28703 1.14924 1.87969 1.01193 0.71769 0.72866 0.73603 1.93575 1.84755 1.75982 1.41288 1.93596 1.85239 1.30344 1.86949 1.29957 1.20135 1.14957 1.09767 1.21791 0.87770 0.87733 1.02550 1.21814 1.00311 1.01618 0.91009 1.21604 0.90986 0.89164 0.97878 1.20893 1.05185 1.03720 0.93628 1.20351 0.93616 0.93682 0.92879 1.23228 1.01639 1.00850 0.75987 1.87263 1.54070 1.52144 1.30124 1.20740 0.76677 0.77684 0.88395 1.90867 1.49675 1.63907 1.33116 0.91108 0.77034 0.85634 0.85392 0.73352 0.80107 0.79280 0.81789 0.83437 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.75 13.96 21.66 0.30 -53.44 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.96 35.59 27.74 68.60 1.90 37.49 16 4 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.22 -6.57 6.52 99.48 0.65 -5.92 16 7 C -0.33 -18.00 10.16 84.04 0.85 -17.14 16 8 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 9 N -0.58 -24.30 5.09 -306.98 -1.56 -25.86 16 10 C 0.45 17.25 7.85 87.66 0.69 17.93 16 11 O -0.61 -29.78 15.32 -3.06 -0.05 -29.82 16 12 C 0.11 2.52 6.69 85.63 0.57 3.10 16 13 N -1.10 -24.87 5.92 -190.80 -1.13 -26.00 16 14 S 2.72 54.09 5.52 -56.49 -0.31 53.78 16 15 O -0.97 -22.49 16.48 -128.00 -2.11 -24.59 16 16 O -0.97 -23.72 17.49 -128.00 -2.24 -25.95 16 17 C -0.66 -9.97 5.84 22.17 0.13 -9.84 16 18 C 0.02 0.21 9.56 22.37 0.21 0.42 16 19 C -0.13 -0.88 10.02 22.24 0.22 -0.66 16 20 C 0.02 0.24 10.10 22.53 0.23 0.47 16 21 C -0.23 -4.10 6.27 -20.16 -0.13 -4.23 16 22 C 0.00 -0.06 6.11 -19.63 -0.12 -0.18 16 23 C 0.06 0.95 7.44 71.27 0.53 1.48 16 24 O -0.32 -7.29 11.13 -52.88 -0.59 -7.88 16 25 C 0.52 12.45 8.58 70.24 0.60 13.05 16 26 O -0.49 -14.47 18.04 19.62 0.35 -14.12 16 27 H 0.28 14.77 8.31 -92.70 -0.77 14.00 16 28 H 0.39 13.06 5.76 -92.71 -0.53 12.53 16 29 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.13 2.34 7.76 -2.39 -0.02 2.32 16 31 H 0.43 10.61 7.73 -96.75 -0.75 9.86 16 32 H 0.18 1.10 7.34 -2.91 -0.02 1.08 16 33 H 0.19 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.15 2.17 7.99 -2.39 -0.02 2.15 16 Total: -1.00 -84.24 336.21 -1.32 -85.57 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.16 Total: 26.61 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.26 Total: 4.24 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -2.39 Total: -105.31 kcal Atomic # 8 Polarization: -97.74 SS G_CDS: -4.63 Total: -102.37 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 1.90 Total: 37.49 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.31 Total: 53.78 kcal Total: -84.24 -1.32 -85.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117136840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.675 kcal (2) G-P(sol) polarization free energy of solvation -84.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds