Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43201 * 120.00247 * 116.16587 * 3 2 1 5 5 N 3.51036 * 140.69112 * 116.16197 * 2 1 3 6 6 C 1.41154 * 119.99962 * 296.15949 * 3 2 1 7 7 C 1.38991 * 120.00107 * 6.18406 * 6 3 2 8 8 H 1.07997 * 120.00179 * 226.18783 * 7 6 3 9 9 C 1.40823 * 119.99755 * 46.19125 * 7 6 3 10 10 N 1.30336 * 120.00279 * 8.13234 * 9 7 6 11 11 Si 1.86804 * 119.99721 * 188.14012 * 9 7 6 12 12 H 1.48501 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47207 * 119.99734 * 11 9 7 14 14 H 1.48503 * 109.46762 * 239.99586 * 11 9 7 15 15 N 1.38230 * 120.00045 * 186.17867 * 6 3 2 16 16 C 1.46500 * 120.00064 * 185.28095 * 15 6 3 17 17 F 1.39900 * 109.47387 * 55.10595 * 16 15 6 18 18 F 1.39902 * 109.47011 * 295.10951 * 16 15 6 19 19 O 1.42903 * 109.47377 * 175.10724 * 16 15 6 20 20 C 1.35935 * 116.99817 * 180.02562 * 19 16 15 21 21 C 1.39161 * 120.45192 * 179.97438 * 20 19 16 22 22 C 1.38489 * 118.38870 * 180.02562 * 21 20 19 23 23 C 1.38408 * 119.20916 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.57383 * 179.97438 * 23 22 21 25 25 N 1.31929 * 120.85360 * 0.02562 * 23 22 21 26 26 C 1.31882 * 121.76109 * 359.97438 * 25 23 22 27 27 H 0.97003 * 120.00276 * 184.98623 * 10 9 7 28 28 H 0.96999 * 120.00365 * 5.28346 * 15 6 3 29 29 H 1.08003 * 120.80598 * 0.02562 * 21 20 19 30 30 H 1.08003 * 120.39736 * 179.72657 * 22 21 20 31 31 H 1.08001 * 119.65028 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.5478 -1.1130 5 7 3.8520 0.9805 -1.9960 6 6 3.2740 -0.5380 1.0972 7 6 2.5854 -1.1838 2.1173 8 1 2.8138 -0.9601 3.1489 9 6 1.5899 -2.1299 1.8057 10 7 1.4223 -2.5175 0.5726 11 14 0.5095 -2.8292 3.1597 12 1 0.8989 -2.2315 4.4621 13 1 -0.9121 -2.5098 2.8733 14 1 0.6833 -4.3028 3.2200 15 7 4.6502 -0.4233 1.1572 16 6 5.3938 -1.0811 2.2344 17 9 5.0849 -2.4455 2.2488 18 9 5.0401 -0.5099 3.4616 19 8 6.7962 -0.9126 2.0171 20 6 7.6336 -1.4676 2.9328 21 6 9.0128 -1.3477 2.7912 22 6 9.8261 -1.9302 3.7488 23 6 9.2453 -2.6078 4.8068 24 17 10.2559 -3.3421 6.0122 25 7 7.9336 -2.7035 4.9105 26 6 7.1255 -2.1628 4.0195 27 1 0.6909 -3.1133 0.3466 28 1 5.1236 0.0928 0.4860 29 1 9.4385 -0.8133 1.9547 30 1 10.9009 -1.8609 3.6684 31 1 6.0566 -2.2617 4.1381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = -32.459679 kcal Electronic energy + Delta-G solvation = -26286.380214 eV Core-core repulsion = 21844.759326 eV Total energy + Delta-G solvation = -4441.620888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.12711 -47.17825 -40.92652 -38.57418 -37.42598 -36.81009 -35.01802 -34.77708 -33.48267 -32.92038 -30.84155 -29.73228 -27.06161 -25.52005 -24.15091 -23.16131 -21.55232 -19.63659 -19.21904 -18.25424 -18.08061 -17.62786 -17.27524 -16.54856 -16.09504 -15.51173 -15.36609 -15.25650 -14.59814 -14.05017 -13.83383 -13.72805 -13.64839 -13.46337 -13.40089 -13.09022 -13.05187 -12.57312 -12.51399 -12.10303 -11.90499 -11.75889 -11.71142 -11.60074 -11.48349 -11.23665 -10.96427 -10.86279 -10.59750 -10.32105 -10.31787 -10.02056 -9.50149 -8.93877 -7.31930 -7.06571 -5.38377 0.49056 0.70549 1.45122 1.69318 2.37264 2.91777 2.94465 3.01221 3.18175 3.38843 3.60509 3.67004 3.78426 4.07955 4.09044 4.15484 4.39863 4.42893 4.46127 4.64591 4.93438 4.99243 5.20109 5.28450 5.43026 5.54619 5.77426 6.16807 6.30381 6.45582 6.59024 7.06081 7.27919 7.46919 7.91174 8.02528 8.18112 8.82742 9.30761 9.64507 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003494 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.191987 B = 8012.391281 C = 9403.147171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.356 3.644 3 C -0.255 4.255 4 C 0.300 3.700 5 N -0.526 5.526 6 C 0.432 3.568 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.094 3.906 10 N -0.738 5.738 11 Si 0.916 3.084 12 H -0.252 1.252 13 H -0.262 1.262 14 H -0.266 1.266 15 N -0.733 5.733 16 C 0.662 3.338 17 F -0.162 7.162 18 F -0.178 7.178 19 O -0.308 6.308 20 C 0.076 3.924 21 C -0.077 4.077 22 C -0.119 4.119 23 C 0.145 3.855 24 Cl -0.029 7.029 25 N -0.439 5.439 26 C 0.060 3.940 27 H 0.298 0.702 28 H 0.411 0.589 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.738 -2.711 9.436 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C 0.046 3.954 3 C -0.274 4.274 4 C -0.008 4.008 5 N -0.209 5.209 6 C 0.325 3.675 7 C -0.511 4.511 8 H 0.125 0.875 9 C -0.135 4.135 10 N -0.359 5.359 11 Si 0.738 3.262 12 H -0.176 1.176 13 H -0.186 1.186 14 H -0.191 1.191 15 N -0.377 5.377 16 C 0.503 3.497 17 F -0.144 7.144 18 F -0.161 7.161 19 O -0.224 6.224 20 C 0.029 3.971 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.020 4.020 24 Cl -0.001 7.001 25 N -0.150 5.150 26 C -0.098 4.098 27 H 0.110 0.890 28 H 0.249 0.751 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 14.581 -2.767 8.719 17.213 hybrid contribution 0.162 -0.192 0.147 0.291 sum 14.743 -2.959 8.867 17.457 Atomic orbital electron populations 1.80957 1.12263 1.17075 1.10559 1.24034 0.90807 0.89125 0.91421 1.12367 0.83744 1.33885 0.97414 1.25429 0.92768 0.90758 0.91805 1.81079 1.09920 1.18068 1.11812 1.16934 0.77852 0.82353 0.90359 1.19400 1.17575 1.19288 0.94815 0.87511 1.25885 0.95768 0.94629 0.97244 1.69446 1.24562 1.22391 1.19464 0.86063 0.80068 0.79245 0.80787 1.17552 1.18649 1.19094 1.45598 1.06007 1.57740 1.28357 1.19368 0.77144 0.75804 0.77394 1.93216 1.92652 1.32486 1.96007 1.93176 1.91676 1.85005 1.46196 1.86324 1.15622 1.72603 1.47827 1.19880 0.90907 0.95997 0.90330 1.20941 0.89125 0.99940 1.00322 1.21704 1.01951 0.97469 0.92828 1.21645 0.89729 0.98405 0.92210 1.98407 1.64595 1.81483 1.55571 1.66980 1.03406 1.17468 1.27178 1.23378 1.01085 0.95579 0.89766 0.88961 0.75084 0.82220 0.82526 0.80505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -13.11 18.51 41.83 0.77 -12.33 16 2 C 0.36 8.54 11.57 -22.47 -0.26 8.28 16 3 C -0.26 -5.67 5.34 -104.94 -0.56 -6.23 16 4 C 0.30 6.57 14.12 -22.48 -0.32 6.26 16 5 N -0.53 -11.77 18.54 41.82 0.78 -11.00 16 6 C 0.43 8.95 6.07 -83.59 -0.51 8.44 16 7 C -0.48 -10.09 6.66 -38.33 -0.26 -10.34 16 8 H 0.11 2.14 6.65 -52.49 -0.35 1.79 16 9 C 0.09 2.01 4.46 -17.21 -0.08 1.93 16 10 N -0.74 -16.73 10.74 55.59 0.60 -16.13 16 11 Si 0.92 16.96 29.58 -169.99 -5.03 11.94 16 12 H -0.25 -4.51 7.11 56.52 0.40 -4.11 16 13 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 14 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 15 N -0.73 -13.03 5.57 -61.67 -0.34 -13.38 16 16 C 0.66 10.68 2.02 59.85 0.12 10.80 16 17 F -0.16 -2.79 14.38 2.25 0.03 -2.76 16 18 F -0.18 -2.84 14.01 2.25 0.03 -2.81 16 19 O -0.31 -4.28 10.25 -19.54 -0.20 -4.48 16 20 C 0.08 0.94 6.50 -39.09 -0.25 0.69 16 21 C -0.08 -0.71 10.13 -39.15 -0.40 -1.11 16 22 C -0.12 -1.00 9.87 -39.43 -0.39 -1.39 16 23 C 0.14 1.59 7.27 -17.45 -0.13 1.46 16 24 Cl -0.03 -0.28 29.10 -51.86 -1.51 -1.79 16 25 N -0.44 -5.84 10.33 -10.24 -0.11 -5.94 16 26 C 0.06 0.81 9.45 -17.38 -0.16 0.64 16 27 H 0.30 6.40 8.29 -40.82 -0.34 6.06 16 28 H 0.41 6.84 7.60 -40.82 -0.31 6.53 16 29 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.18 2.45 5.12 -52.49 -0.27 2.18 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -25.80 319.56 -4.25 -30.06 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -0.91 Total: 4.39 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: -3.19 Total: 19.43 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 1.70 Total: -58.78 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.20 Total: -4.48 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.06 Total: -5.57 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.94 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.80 -4.25 -30.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.402 kcal (2) G-P(sol) polarization free energy of solvation -25.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds