Wall clock time and date at job start Sat Apr 11 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43201 * 120.00247 * 116.16587 * 3 2 1 5 5 N 3.51036 * 140.69112 * 116.16197 * 2 1 3 6 6 C 1.41154 * 119.99962 * 296.15949 * 3 2 1 7 7 C 1.38991 * 120.00107 * 6.18406 * 6 3 2 8 8 H 1.07997 * 120.00179 * 226.18783 * 7 6 3 9 9 C 1.40823 * 119.99755 * 46.19125 * 7 6 3 10 10 N 1.30336 * 120.00279 * 8.13234 * 9 7 6 11 11 Si 1.86804 * 119.99721 * 188.14012 * 9 7 6 12 12 H 1.48501 * 109.47155 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47207 * 119.99734 * 11 9 7 14 14 H 1.48503 * 109.46762 * 239.99586 * 11 9 7 15 15 N 1.38230 * 120.00045 * 186.17867 * 6 3 2 16 16 C 1.46500 * 120.00064 * 185.28095 * 15 6 3 17 17 F 1.39900 * 109.47387 * 55.10595 * 16 15 6 18 18 F 1.39902 * 109.47011 * 295.10951 * 16 15 6 19 19 O 1.42903 * 109.47377 * 175.10724 * 16 15 6 20 20 C 1.35935 * 116.99817 * 180.02562 * 19 16 15 21 21 C 1.39161 * 120.45192 * 179.97438 * 20 19 16 22 22 C 1.38489 * 118.38870 * 180.02562 * 21 20 19 23 23 C 1.38408 * 119.20916 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.57383 * 179.97438 * 23 22 21 25 25 N 1.31929 * 120.85360 * 0.02562 * 23 22 21 26 26 C 1.31882 * 121.76109 * 359.97438 * 25 23 22 27 27 H 0.97003 * 120.00276 * 184.98623 * 10 9 7 28 28 H 0.96999 * 120.00365 * 5.28346 * 15 6 3 29 29 H 1.08003 * 120.80598 * 0.02562 * 21 20 19 30 30 H 1.08003 * 120.39736 * 179.72657 * 22 21 20 31 31 H 1.08001 * 119.65028 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.5478 -1.1130 5 7 3.8520 0.9805 -1.9960 6 6 3.2740 -0.5380 1.0972 7 6 2.5854 -1.1838 2.1173 8 1 2.8138 -0.9601 3.1489 9 6 1.5899 -2.1299 1.8057 10 7 1.4223 -2.5175 0.5726 11 14 0.5095 -2.8292 3.1597 12 1 0.8989 -2.2315 4.4621 13 1 -0.9121 -2.5098 2.8733 14 1 0.6833 -4.3028 3.2200 15 7 4.6502 -0.4233 1.1572 16 6 5.3938 -1.0811 2.2344 17 9 5.0849 -2.4455 2.2488 18 9 5.0401 -0.5099 3.4616 19 8 6.7962 -0.9126 2.0171 20 6 7.6336 -1.4676 2.9328 21 6 9.0128 -1.3477 2.7912 22 6 9.8261 -1.9302 3.7488 23 6 9.2453 -2.6078 4.8068 24 17 10.2559 -3.3421 6.0122 25 7 7.9336 -2.7035 4.9105 26 6 7.1255 -2.1628 4.0195 27 1 0.6909 -3.1133 0.3466 28 1 5.1236 0.0928 0.4860 29 1 9.4385 -0.8133 1.9547 30 1 10.9009 -1.8609 3.6684 31 1 6.0566 -2.2617 4.1381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:05 Heat of formation + Delta-G solvation = -48.535294 kcal Electronic energy + Delta-G solvation = -26287.077305 eV Core-core repulsion = 21844.759326 eV Total energy + Delta-G solvation = -4442.317979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.028 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.42372 -48.48632 -41.82741 -39.62046 -39.02267 -37.61643 -36.74678 -36.55442 -35.13094 -33.75838 -32.04651 -31.04579 -28.75764 -26.70569 -25.06570 -24.17435 -23.12188 -20.86482 -20.69268 -19.71597 -19.35985 -18.80032 -18.34234 -17.82826 -17.46995 -16.87130 -16.67531 -16.33636 -15.56466 -15.27377 -15.06027 -14.86810 -14.77151 -14.71360 -14.68722 -14.50154 -14.33228 -14.21938 -13.84285 -13.72524 -13.49762 -13.40739 -13.25649 -12.90068 -12.71929 -12.58709 -12.55395 -12.37328 -12.11125 -11.91210 -11.13259 -11.09468 -10.88355 -9.83819 -8.97184 -8.73908 -7.09693 -0.36446 -0.09563 0.38571 0.71153 0.75203 1.39821 1.47231 1.54680 1.99368 2.08633 2.14321 2.28834 2.32541 2.36082 2.63629 2.75218 3.18484 3.29575 3.41155 3.65558 3.70187 3.79954 3.85215 4.18561 4.42763 4.56899 4.67937 4.77417 4.92858 4.96396 5.28020 5.49245 5.87395 6.33009 6.36936 6.41162 6.56807 7.07674 7.45671 7.99919 Molecular weight = 340.03amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.003494 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.191987 B = 8012.391281 C = 9403.147171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.358 3.642 3 C -0.272 4.272 4 C 0.307 3.693 5 N -0.536 5.536 6 C 0.440 3.560 7 C -0.487 4.487 8 H 0.116 0.884 9 C 0.066 3.934 10 N -0.765 5.765 11 Si 0.962 3.038 12 H -0.241 1.241 13 H -0.276 1.276 14 H -0.257 1.257 15 N -0.729 5.729 16 C 0.665 3.335 17 F -0.170 7.170 18 F -0.178 7.178 19 O -0.303 6.303 20 C 0.052 3.948 21 C -0.062 4.062 22 C -0.101 4.101 23 C 0.134 3.866 24 Cl -0.020 7.020 25 N -0.468 5.468 26 C 0.044 3.956 27 H 0.300 0.700 28 H 0.417 0.583 29 H 0.193 0.807 30 H 0.198 0.802 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.006 -2.793 10.181 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C 0.049 3.951 3 C -0.291 4.291 4 C 0.000 4.000 5 N -0.218 5.218 6 C 0.330 3.670 7 C -0.519 4.519 8 H 0.134 0.866 9 C -0.160 4.160 10 N -0.386 5.386 11 Si 0.782 3.218 12 H -0.163 1.163 13 H -0.201 1.201 14 H -0.181 1.181 15 N -0.372 5.372 16 C 0.506 3.494 17 F -0.152 7.152 18 F -0.160 7.160 19 O -0.218 6.218 20 C 0.006 3.994 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.031 4.031 24 Cl 0.009 6.991 25 N -0.179 5.179 26 C -0.114 4.114 27 H 0.111 0.889 28 H 0.256 0.744 29 H 0.210 0.790 30 H 0.215 0.785 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 16.893 -2.846 9.473 19.576 hybrid contribution -0.369 -0.199 -0.011 0.420 sum 16.524 -3.044 9.462 19.283 Atomic orbital electron populations 1.80933 1.12922 1.18316 1.11362 1.24351 0.91255 0.88570 0.90876 1.12427 0.83187 1.35184 0.98292 1.25339 0.92566 0.90475 0.91590 1.81074 1.10228 1.18620 1.11925 1.16902 0.78953 0.81453 0.89660 1.19636 1.17780 1.19150 0.95316 0.86623 1.26532 0.96305 0.94671 0.98518 1.69490 1.25152 1.23168 1.20821 0.85389 0.77784 0.79286 0.79366 1.16295 1.20112 1.18092 1.45403 1.05309 1.57461 1.29001 1.19209 0.78264 0.75185 0.76763 1.93198 1.92925 1.33092 1.96006 1.93171 1.91870 1.84941 1.46004 1.86309 1.14201 1.72996 1.48311 1.20168 0.91896 0.97097 0.90264 1.21390 0.87515 0.98866 1.01001 1.22142 1.03787 0.95223 0.90990 1.22051 0.89307 0.98568 0.93138 1.98412 1.63933 1.81374 1.55389 1.66904 1.04732 1.18484 1.27815 1.23165 1.00712 0.96817 0.90667 0.88868 0.74392 0.78957 0.78456 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.70 18.51 19.00 0.35 -27.35 16 2 C 0.36 17.28 11.57 88.33 1.02 18.30 16 3 C -0.27 -12.05 5.34 -20.07 -0.11 -12.15 16 4 C 0.31 13.36 14.12 88.34 1.25 14.61 16 5 N -0.54 -23.61 18.54 19.00 0.35 -23.26 16 6 C 0.44 18.05 6.07 39.03 0.24 18.28 16 7 C -0.49 -20.28 6.66 23.08 0.15 -20.13 16 8 H 0.12 4.54 6.65 -2.91 -0.02 4.52 16 9 C 0.07 2.81 4.46 85.55 0.38 3.20 16 10 N -0.76 -34.76 10.74 21.98 0.24 -34.52 16 11 Si 0.96 34.19 29.58 68.60 2.03 36.22 16 12 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 13 H -0.28 -10.41 7.11 99.48 0.71 -9.71 16 14 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 15 N -0.73 -25.41 5.57 -449.48 -2.50 -27.91 16 16 C 0.66 21.01 2.02 127.77 0.26 21.27 16 17 F -0.17 -5.85 14.38 44.97 0.65 -5.20 16 18 F -0.18 -5.58 14.01 44.97 0.63 -4.95 16 19 O -0.30 -8.00 10.25 -92.82 -0.95 -8.95 16 20 C 0.05 1.21 6.50 22.59 0.15 1.36 16 21 C -0.06 -0.94 10.13 22.55 0.23 -0.71 16 22 C -0.10 -1.35 9.87 22.37 0.22 -1.13 16 23 C 0.13 2.66 7.27 84.72 0.62 3.28 16 24 Cl -0.02 -0.34 29.10 -2.72 -0.08 -0.41 16 25 N -0.47 -12.06 10.33 -186.32 -1.93 -13.98 16 26 C 0.04 1.16 9.45 84.78 0.80 1.96 16 27 H 0.30 12.96 8.29 -92.71 -0.77 12.19 16 28 H 0.42 13.52 7.60 -92.71 -0.70 12.81 16 29 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.16 4.58 5.12 -2.91 -0.01 4.57 16 Total: -1.00 -55.09 319.56 4.56 -50.53 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.57 Total: 11.66 kcal Atomic # 6 Polarization: 42.92 SS G_CDS: 5.21 Total: 48.13 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -3.49 Total: -127.02 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.95 Total: -8.95 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 1.28 Total: -10.15 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -55.09 4.56 -50.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.996 kcal (2) G-P(sol) polarization free energy of solvation -55.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds