Wall clock time and date at job start Sat Apr 11 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86807 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47016 * 299.99571 * 3 2 1 6 6 H 1.48494 * 109.47032 * 59.99775 * 3 2 1 7 7 C 1.39866 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00330 * 163.23121 * 7 2 1 9 9 C 1.41202 * 119.99524 * 343.22964 * 7 2 1 10 10 C 1.40794 * 120.56115 * 155.70994 * 9 7 2 11 11 N 1.31473 * 120.38571 * 180.02562 * 10 9 7 12 12 C 1.32742 * 121.74225 * 0.02562 * 11 10 9 13 13 N 1.38404 * 119.43896 * 179.72501 * 12 11 10 14 14 C 1.46503 * 119.99952 * 359.97438 * 13 12 11 15 15 H 1.08997 * 107.99932 * 321.78800 * 14 13 12 16 16 C 1.51703 * 108.12628 * 78.37751 * 14 13 12 17 17 O 1.21230 * 121.24067 * 301.73942 * 16 14 13 18 18 N 1.34999 * 117.52537 * 121.80581 * 16 14 13 19 19 C 1.33791 * 121.96892 * 359.92185 * 18 16 14 20 20 O 1.21504 * 117.61165 * 180.02562 * 19 18 16 21 21 N 1.33794 * 124.78021 * 0.06215 * 19 18 16 22 22 C 1.34991 * 121.96499 * 359.97438 * 21 19 18 23 23 S 1.59902 * 121.23801 * 180.02562 * 22 21 19 24 24 C 1.39795 * 121.12569 * 359.97438 * 12 11 10 25 25 Cl 1.73596 * 120.26331 * 179.97438 * 24 12 11 26 26 C 1.36663 * 119.47344 * 0.02562 * 24 12 11 27 27 H 0.97004 * 120.00064 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.80701 * 0.04224 * 10 9 7 29 29 H 0.96997 * 120.00594 * 179.97438 * 13 12 11 30 30 H 0.96997 * 119.01677 * 179.97438 * 18 16 14 31 31 H 0.96991 * 119.01880 * 179.97438 * 21 19 18 32 32 H 1.08001 * 120.80052 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8842 2.3965 1.2124 7 6 2.0084 -1.2112 0.0005 8 1 3.0539 -1.2312 -0.2693 9 6 1.3474 -2.4079 0.3539 10 6 1.8243 -3.6511 -0.1035 11 7 1.2059 -4.7632 0.2272 12 6 0.1225 -4.7582 0.9942 13 7 -0.4941 -5.9568 1.3082 14 6 0.0492 -7.2167 0.7947 15 1 0.3983 -7.0430 -0.2231 16 6 1.2491 -7.5938 1.6429 17 8 2.2016 -6.8515 1.7500 18 7 1.2174 -8.7873 2.2730 19 6 0.1739 -9.6177 2.1654 20 8 0.2288 -10.6719 2.7669 21 7 -0.9253 -9.3723 1.4432 22 6 -1.0786 -8.2298 0.7407 23 16 -2.4002 -7.9543 -0.1162 24 6 -0.4093 -3.5625 1.4859 25 17 -1.8277 -3.5820 2.4866 26 6 0.1956 -2.3781 1.1716 27 1 -0.4850 0.8401 -0.0004 28 1 2.7034 -3.6915 -0.7295 29 1 -1.2860 -5.9628 1.8683 30 1 1.9734 -9.0504 2.8208 31 1 -1.6331 -10.0352 1.4237 32 1 -0.1968 -1.4418 1.5402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160858047.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:17 Heat of formation + Delta-G solvation = 1.441858 kcal Electronic energy + Delta-G solvation = -24271.286582 eV Core-core repulsion = 20384.976161 eV Total energy + Delta-G solvation = -3886.310421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 340.018 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44023 -39.54303 -38.70443 -37.55168 -35.71442 -35.33159 -34.94989 -33.74823 -30.64564 -30.44677 -28.35280 -26.18120 -24.95469 -24.11308 -22.19161 -21.41460 -20.15510 -19.78018 -18.85590 -17.57459 -17.47596 -17.28742 -16.90503 -16.07524 -15.70253 -15.25919 -15.02789 -14.58146 -14.38965 -14.12959 -13.74693 -13.25232 -13.03482 -12.42333 -12.26592 -12.19751 -11.84164 -11.52483 -11.36881 -11.29336 -11.13771 -10.92064 -10.78032 -10.62504 -10.47271 -9.97099 -9.74079 -9.39077 -9.10718 -8.40581 -8.26144 -8.23399 -7.15167 -6.88270 -4.45523 -0.35058 1.40937 1.50329 1.95555 2.34754 2.53059 2.62689 2.74526 3.00902 3.04836 3.05417 3.08539 3.10450 3.69304 3.82203 4.20162 4.48187 4.86158 5.25514 5.43765 5.64311 5.70233 5.77811 6.13953 6.51414 6.60569 6.75250 6.91723 7.01335 7.02266 7.36834 7.52627 7.55244 7.77617 7.95457 8.23701 8.53684 8.59661 9.34231 10.00525 Molecular weight = 340.02amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.003422 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.589590 B = 8180.264340 C = 8797.200547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.048 3.952 10 C 0.017 3.983 11 N -0.478 5.478 12 C 0.268 3.732 13 N -0.708 5.708 14 C 0.160 3.840 15 H 0.157 0.843 16 C 0.506 3.494 17 O -0.422 6.422 18 N -0.670 5.670 19 C 0.708 3.292 20 O -0.531 6.531 21 N -0.614 5.614 22 C 0.221 3.779 23 S -0.242 6.242 24 C -0.083 4.083 25 Cl -0.112 7.112 26 C -0.094 4.094 27 H 0.284 0.716 28 H 0.136 0.864 29 H 0.406 0.594 30 H 0.429 0.571 31 H 0.441 0.559 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -11.839 2.304 12.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.043 3.957 10 C -0.143 4.143 11 N -0.192 5.192 12 C 0.037 3.963 13 N -0.353 5.353 14 C 0.043 3.957 15 H 0.174 0.826 16 C 0.287 3.713 17 O -0.284 6.284 18 N -0.342 5.342 19 C 0.404 3.596 20 O -0.405 6.405 21 N -0.265 5.265 22 C -0.010 4.010 23 S -0.110 6.110 24 C -0.115 4.115 25 Cl -0.084 7.084 26 C -0.121 4.121 27 H 0.095 0.905 28 H 0.154 0.846 29 H 0.245 0.755 30 H 0.271 0.729 31 H 0.287 0.713 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.406 -12.342 1.763 12.698 hybrid contribution 0.516 1.003 1.437 1.827 sum -1.889 -11.340 3.200 11.933 Atomic orbital electron populations 1.69789 1.07583 1.29692 1.34511 1.25942 0.94810 1.01616 0.92190 0.86188 0.80947 0.80571 0.78690 1.18249 1.19855 1.19644 1.19442 0.97913 0.90555 1.39693 0.89640 1.18353 0.92164 0.93947 0.91250 1.22309 1.01672 0.86869 1.03425 1.66592 1.06619 1.32384 1.13605 1.17059 0.94331 0.82836 1.02041 1.43430 1.33018 0.99477 1.59372 1.20770 0.87426 0.85355 1.02164 0.82642 1.22080 0.89725 0.79795 0.79715 1.90901 1.32934 1.47974 1.56605 1.44683 1.20501 1.19358 1.49691 1.15696 0.80371 0.83873 0.79683 1.91091 1.79826 1.23523 1.46013 1.44082 1.19590 1.19719 1.43117 1.25352 1.01096 0.87093 0.87436 1.90979 1.11681 1.79172 1.29152 1.20799 0.92593 0.94740 1.03341 1.98255 1.41753 1.98667 1.69730 1.21283 0.97399 0.95548 0.97886 0.90480 0.84618 0.75522 0.72859 0.71307 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.92 10.91 55.54 0.61 -18.31 16 2 C 0.07 1.68 5.18 -17.34 -0.09 1.59 16 3 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.45 -10.74 9.07 -37.85 -0.34 -11.08 16 8 H 0.09 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.05 1.18 5.59 -106.65 -0.60 0.58 16 10 C 0.02 0.40 10.97 -16.74 -0.18 0.21 16 11 N -0.48 -10.35 7.95 -11.75 -0.09 -10.44 16 12 C 0.27 5.52 7.08 -155.06 -1.10 4.43 16 13 N -0.71 -11.65 4.88 -55.12 -0.27 -11.92 16 14 C 0.16 2.19 2.70 -69.24 -0.19 2.00 16 15 H 0.16 2.29 7.54 -51.93 -0.39 1.90 16 16 C 0.51 7.00 7.67 -10.39 -0.08 6.92 16 17 O -0.42 -7.47 16.36 5.60 0.09 -7.38 16 18 N -0.67 -7.14 5.14 -15.88 -0.08 -7.22 16 19 C 0.71 7.36 8.48 -88.67 -0.75 6.61 16 20 O -0.53 -6.58 17.83 5.36 0.10 -6.48 16 21 N -0.61 -5.48 5.13 -15.40 -0.08 -5.56 16 22 C 0.22 2.42 6.33 -10.39 -0.07 2.36 16 23 S -0.24 -2.92 29.93 -107.50 -3.22 -6.14 16 24 C -0.08 -1.80 6.32 -39.57 -0.25 -2.05 16 25 Cl -0.11 -2.08 27.56 -51.86 -1.43 -3.50 16 26 C -0.09 -2.25 8.52 -38.99 -0.33 -2.59 16 27 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 28 H 0.14 2.86 8.06 -52.49 -0.42 2.43 16 29 H 0.41 6.34 7.15 -40.82 -0.29 6.05 16 30 H 0.43 3.91 8.80 -40.82 -0.36 3.55 16 31 H 0.44 3.01 8.62 -40.82 -0.35 2.65 16 32 H 0.14 3.51 6.20 -52.49 -0.33 3.18 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -27.36 317.08 -10.30 -37.66 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -1.69 Total: 13.18 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -3.98 Total: 8.99 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.08 Total: -53.46 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.19 Total: -13.86 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -3.22 Total: -6.14 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.43 Total: -3.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.36 -10.30 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160858047.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.103 kcal (2) G-P(sol) polarization free energy of solvation -27.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds